Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04161

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04160 and MPMX19_04161 are separated by 58 nucleotidesMPMX19_04161 and MPMX19_04162 are separated by 124 nucleotides MPMX19_04160: MPMX19_04160 - hypothetical protein, at 477,004 to 478,191 _04160 MPMX19_04161: MPMX19_04161 - hypothetical protein, at 478,250 to 479,044 _04161 MPMX19_04162: MPMX19_04162 - Transcription-repair-coupling factor, at 479,169 to 482,582 _04162 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1 2 3at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.607 kb on + strand, within MPMX19_04160at 477.607 kb on + strand, within MPMX19_04160at 477.608 kb on - strand, within MPMX19_04160at 477.628 kb on + strand, within MPMX19_04160at 477.629 kb on - strand, within MPMX19_04160at 477.793 kb on + strand, within MPMX19_04160at 477.793 kb on + strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.839 kb on - strand, within MPMX19_04160at 477.839 kb on - strand, within MPMX19_04160at 477.859 kb on + strand, within MPMX19_04160at 477.859 kb on + strand, within MPMX19_04160at 477.860 kb on - strand, within MPMX19_04160at 477.949 kb on + strand, within MPMX19_04160at 477.949 kb on + strand, within MPMX19_04160at 477.949 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.959 kb on - strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.007 kb on - strand, within MPMX19_04160at 478.007 kb on - strand, within MPMX19_04160at 478.007 kb on - strand, within MPMX19_04160at 478.015 kb on + strand, within MPMX19_04160at 478.015 kb on + strand, within MPMX19_04160at 478.045 kb on + strand, within MPMX19_04160at 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.087 kb on + strandat 478.087 kb on + strandat 478.087 kb on + strandat 478.096 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.189 kb on + strandat 478.189 kb on + strandat 478.190 kb on - strandat 478.190 kb on - strandat 478.190 kb on - strandat 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 479.061 kb on - strandat 479.061 kb on - strandat 479.072 kb on + strandat 479.072 kb on + strandat 479.072 kb on + strandat 479.073 kb on - strandat 479.073 kb on - strandat 479.073 kb on - strandat 479.101 kb on + strandat 479.101 kb on + strandat 479.102 kb on - strandat 479.102 kb on - strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.246 kb on - strandat 479.246 kb on - strandat 479.607 kb on + strand, within MPMX19_04162at 479.607 kb on + strand, within MPMX19_04162at 479.607 kb on + strand, within MPMX19_04162at 479.607 kb on + strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.608 kb on - strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.649 kb on + strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.650 kb on - strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.784 kb on + strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.785 kb on - strand, within MPMX19_04162at 479.958 kb on + strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162at 479.959 kb on - strand, within MPMX19_04162

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
477,256 + MPMX19_04160 0.21 -0.1
477,256 + MPMX19_04160 0.21 -0.2
477,256 + MPMX19_04160 0.21 -1.2
477,256 + MPMX19_04160 0.21 +0.0
477,256 + MPMX19_04160 0.21 +1.0
477,256 + MPMX19_04160 0.21 +0.3
477,256 + MPMX19_04160 0.21 -2.1
477,256 + MPMX19_04160 0.21 -1.4
477,256 + MPMX19_04160 0.21 -0.5
477,256 + MPMX19_04160 0.21 -0.6
477,256 + MPMX19_04160 0.21 -1.3
477,256 + MPMX19_04160 0.21 -1.4
477,257 - MPMX19_04160 0.21 +1.5
477,257 - MPMX19_04160 0.21 +0.3
477,257 - MPMX19_04160 0.21 +0.2
477,257 - MPMX19_04160 0.21 +0.8
477,257 - MPMX19_04160 0.21 -1.6
477,445 + MPMX19_04160 0.37 -0.8
477,445 + MPMX19_04160 0.37 -1.7
477,445 + MPMX19_04160 0.37 -0.7
477,445 + MPMX19_04160 0.37 -0.8
477,445 + MPMX19_04160 0.37 -1.0
477,445 + MPMX19_04160 0.37 -0.4
477,445 + MPMX19_04160 0.37 +0.1
477,445 + MPMX19_04160 0.37 -1.7
477,445 + MPMX19_04160 0.37 -0.8
477,445 + MPMX19_04160 0.37 -1.1
477,445 + MPMX19_04160 0.37 +0.4
477,445 + MPMX19_04160 0.37 -0.6
477,446 - MPMX19_04160 0.37 -0.1
477,446 - MPMX19_04160 0.37 -1.3
477,446 - MPMX19_04160 0.37 +0.4
477,607 + MPMX19_04160 0.51 -1.1
477,607 + MPMX19_04160 0.51 -1.7
477,608 - MPMX19_04160 0.51 +0.0
477,628 + MPMX19_04160 0.53 +0.6
477,629 - MPMX19_04160 0.53 +0.0
477,793 + MPMX19_04160 0.66 -0.6
477,793 + MPMX19_04160 0.66 -0.3
477,794 - MPMX19_04160 0.66 -0.1
477,794 - MPMX19_04160 0.66 -0.2
477,794 - MPMX19_04160 0.66 +1.2
477,820 + MPMX19_04160 0.69 -1.0
477,820 + MPMX19_04160 0.69 +0.4
477,820 + MPMX19_04160 0.69 +0.4
477,820 + MPMX19_04160 0.69 -0.4
477,820 + MPMX19_04160 0.69 -0.6
477,839 - MPMX19_04160 0.70 -1.4
477,839 - MPMX19_04160 0.70 +1.7
477,859 + MPMX19_04160 0.72 +0.6
477,859 + MPMX19_04160 0.72 +0.6
477,860 - MPMX19_04160 0.72 +3.6
477,949 + MPMX19_04160 0.80 -0.3
477,949 + MPMX19_04160 0.80 -1.3
477,949 + MPMX19_04160 0.80 +0.4
477,958 + MPMX19_04160 0.80 +1.1
477,958 + MPMX19_04160 0.80 -0.9
477,958 + MPMX19_04160 0.80 -1.4
477,958 + MPMX19_04160 0.80 +1.0
477,958 + MPMX19_04160 0.80 -1.0
477,958 + MPMX19_04160 0.80 +0.8
477,958 + MPMX19_04160 0.80 +1.0
477,958 + MPMX19_04160 0.80 -0.1
477,958 + MPMX19_04160 0.80 -0.1
477,958 + MPMX19_04160 0.80 +1.7
477,959 - MPMX19_04160 0.80 -0.3
478,006 + MPMX19_04160 0.84 +0.4
478,006 + MPMX19_04160 0.84 -1.0
478,006 + MPMX19_04160 0.84 +1.0
478,006 + MPMX19_04160 0.84 -0.2
478,007 - MPMX19_04160 0.84 -1.8
478,007 - MPMX19_04160 0.84 +0.2
478,007 - MPMX19_04160 0.84 -1.1
478,015 + MPMX19_04160 0.85 +0.6
478,015 + MPMX19_04160 0.85 -0.5
478,045 + MPMX19_04160 0.88 -0.6
478,084 + -0.9
478,084 + -1.3
478,084 + -1.1
478,084 + +1.0
478,084 + -1.0
478,084 + -0.8
478,084 + -1.1
478,084 + +0.4
478,084 + +1.3
478,084 + +1.0
478,084 + -0.8
478,084 + -0.1
478,084 + +0.2
478,084 + -0.8
478,084 + +0.6
478,085 - -1.0
478,085 - -0.3
478,085 - -1.1
478,085 - -0.7
478,085 - +1.0
478,085 - +0.3
478,087 + +0.1
478,087 + -0.4
478,087 + +0.1
478,096 + -0.9
478,129 + -0.1
478,129 + +0.3
478,129 + -0.8
478,129 + -1.8
478,129 + +0.2
478,129 + +0.2
478,129 + -1.4
478,129 + +0.4
478,129 + -0.7
478,129 + +0.3
478,129 + +0.9
478,129 + +1.0
478,129 + -2.1
478,129 + -0.6
478,129 + +0.1
478,129 + -0.5
478,129 + +0.1
478,129 + +0.4
478,129 + +0.0
478,129 + +0.3
478,130 - -0.9
478,130 - -0.6
478,130 - +0.6
478,130 - +0.0
478,130 - -1.7
478,130 - -1.3
478,130 - -0.6
478,130 - +1.6
478,189 + +0.3
478,189 + -1.0
478,190 - -0.2
478,190 - +1.0
478,190 - +0.0
478,342 + MPMX19_04161 0.12 +0.8
478,342 + MPMX19_04161 0.12 -0.6
478,342 + MPMX19_04161 0.12 -0.5
478,342 + MPMX19_04161 0.12 +1.1
478,342 + MPMX19_04161 0.12 +0.3
478,343 - MPMX19_04161 0.12 +0.0
478,343 - MPMX19_04161 0.12 +1.4
478,343 - MPMX19_04161 0.12 +1.3
479,061 - -1.7
479,061 - +0.2
479,072 + -0.8
479,072 + +0.2
479,072 + -0.1
479,073 - +2.4
479,073 - -0.6
479,073 - -1.1
479,101 + -2.1
479,101 + +0.7
479,102 - -1.1
479,102 - +0.2
479,150 + -2.5
479,150 + -2.3
479,150 + -0.4
479,150 + +0.0
479,246 - +0.0
479,246 - +1.2
479,607 + MPMX19_04162 0.13 +0.3
479,607 + MPMX19_04162 0.13 +0.4
479,607 + MPMX19_04162 0.13 +0.1
479,607 + MPMX19_04162 0.13 -0.7
479,608 - MPMX19_04162 0.13 +1.3
479,608 - MPMX19_04162 0.13 -0.4
479,608 - MPMX19_04162 0.13 +0.5
479,608 - MPMX19_04162 0.13 -1.2
479,608 - MPMX19_04162 0.13 +1.3
479,649 + MPMX19_04162 0.14 +0.7
479,649 + MPMX19_04162 0.14 +0.1
479,649 + MPMX19_04162 0.14 -0.6
479,649 + MPMX19_04162 0.14 +0.9
479,649 + MPMX19_04162 0.14 -1.0
479,649 + MPMX19_04162 0.14 -1.0
479,650 - MPMX19_04162 0.14 -0.2
479,650 - MPMX19_04162 0.14 -0.1
479,650 - MPMX19_04162 0.14 +1.3
479,650 - MPMX19_04162 0.14 +1.0
479,650 - MPMX19_04162 0.14 +0.6
479,650 - MPMX19_04162 0.14 +0.0
479,784 + MPMX19_04162 0.18 +0.6
479,784 + MPMX19_04162 0.18 +1.2
479,784 + MPMX19_04162 0.18 -0.5
479,784 + MPMX19_04162 0.18 +0.2
479,784 + MPMX19_04162 0.18 -0.1
479,784 + MPMX19_04162 0.18 +0.1
479,784 + MPMX19_04162 0.18 +0.3
479,784 + MPMX19_04162 0.18 -0.4
479,785 - MPMX19_04162 0.18 +0.0
479,785 - MPMX19_04162 0.18 +0.9
479,785 - MPMX19_04162 0.18 -0.7
479,785 - MPMX19_04162 0.18 -0.2
479,785 - MPMX19_04162 0.18 -0.3
479,958 + MPMX19_04162 0.23 -2.1
479,959 - MPMX19_04162 0.23 -1.4
479,959 - MPMX19_04162 0.23 -0.2
479,959 - MPMX19_04162 0.23 +0.6
479,959 - MPMX19_04162 0.23 -0.2
479,959 - MPMX19_04162 0.23 +1.3
479,959 - MPMX19_04162 0.23 +1.0
479,959 - MPMX19_04162 0.23 +2.4
479,959 - MPMX19_04162 0.23 -0.4

Or see this region's nucleotide sequence