Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04112 and MPMX19_04113 overlap by 1 nucleotides MPMX19_04113 and MPMX19_04114 are separated by 48 nucleotides MPMX19_04114 and MPMX19_04115 are separated by 22 nucleotides
MPMX19_04112: MPMX19_04112 - hypothetical protein, at 418,874 to 420,349
_04112
MPMX19_04113: MPMX19_04113 - hypothetical protein, at 420,349 to 421,029
_04113
MPMX19_04114: MPMX19_04114 - hypothetical protein, at 421,078 to 422,766
_04114
MPMX19_04115: MPMX19_04115 - Sensor histidine kinase RcsC, at 422,789 to 425,038
_04115
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 420.137 kb on + strand, within MPMX19_04112 at 420.168 kb on - strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 421.048 kb on + strand at 421.048 kb on + strand at 421.227 kb on + strand at 421.540 kb on + strand, within MPMX19_04114 at 421.541 kb on - strand, within MPMX19_04114 at 421.541 kb on - strand, within MPMX19_04114 at 421.541 kb on - strand, within MPMX19_04114 at 421.694 kb on - strand, within MPMX19_04114 at 421.694 kb on - strand, within MPMX19_04114 at 421.762 kb on + strand, within MPMX19_04114 at 421.763 kb on - strand, within MPMX19_04114 at 421.763 kb on - strand, within MPMX19_04114 at 421.763 kb on - strand, within MPMX19_04114 at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.756 kb on - strand at 422.756 kb on - strand at 422.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 420,137 + MPMX19_04112 0.86 -1.4 420,168 - MPMX19_04112 0.88 +0.5 420,185 + MPMX19_04112 0.89 -1.5 420,185 + MPMX19_04112 0.89 -1.7 420,185 + MPMX19_04112 0.89 -0.7 421,048 + -1.1 421,048 + -1.2 421,227 + +0.1 421,540 + MPMX19_04114 0.27 -0.6 421,541 - MPMX19_04114 0.27 -0.8 421,541 - MPMX19_04114 0.27 -1.9 421,541 - MPMX19_04114 0.27 -2.6 421,694 - MPMX19_04114 0.36 -1.1 421,694 - MPMX19_04114 0.36 -1.6 421,762 + MPMX19_04114 0.40 -1.1 421,763 - MPMX19_04114 0.41 +0.4 421,763 - MPMX19_04114 0.41 -1.4 421,763 - MPMX19_04114 0.41 -2.7 422,755 + -0.7 422,755 + -0.4 422,755 + -1.4 422,755 + -1.8 422,755 + +0.0 422,755 + +1.4 422,755 + +0.7 422,755 + -0.7 422,756 - -1.4 422,756 - -0.3 422,756 - -1.3
Or see this region's nucleotide sequence