Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04082

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04079 and MPMX19_04080 are separated by 215 nucleotidesMPMX19_04080 and MPMX19_04081 are separated by 12 nucleotidesMPMX19_04081 and MPMX19_04082 are separated by 24 nucleotidesMPMX19_04082 and MPMX19_04083 overlap by 4 nucleotidesMPMX19_04083 and MPMX19_04084 are separated by 10 nucleotides MPMX19_04079: MPMX19_04079 - hypothetical protein, at 385,460 to 385,783 _04079 MPMX19_04080: MPMX19_04080 - hypothetical protein, at 385,999 to 386,433 _04080 MPMX19_04081: MPMX19_04081 - hypothetical protein, at 386,446 to 386,577 _04081 MPMX19_04082: MPMX19_04082 - hypothetical protein, at 386,602 to 387,138 _04082 MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581 _04083 MPMX19_04084: MPMX19_04084 - hypothetical protein, at 387,592 to 388,041 _04084 Position (kb) 386 387 388Strain fitness (log2 ratio) -2 -1 0 1 2at 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 386.512 kb on + strand, within MPMX19_04081at 386.512 kb on + strand, within MPMX19_04081at 386.512 kb on + strand, within MPMX19_04081at 386.513 kb on - strand, within MPMX19_04081at 386.513 kb on - strand, within MPMX19_04081at 386.583 kb on + strandat 386.583 kb on + strandat 386.583 kb on + strandat 386.584 kb on - strandat 386.584 kb on - strandat 386.584 kb on - strandat 386.686 kb on + strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.734 kb on + strand, within MPMX19_04082at 386.735 kb on - strand, within MPMX19_04082at 386.735 kb on - strand, within MPMX19_04082at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.321 kb on + strand, within MPMX19_04083at 387.322 kb on - strand, within MPMX19_04083at 387.322 kb on - strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.411 kb on + strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.412 kb on - strand, within MPMX19_04083at 387.560 kb on + strandat 387.560 kb on + strandat 387.560 kb on + strandat 387.561 kb on - strandat 387.561 kb on - strandat 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.862 kb on + strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 387.863 kb on - strand, within MPMX19_04084at 388.027 kb on + strandat 388.027 kb on + strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.028 kb on - strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.054 kb on + strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.055 kb on - strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.066 kb on + strandat 388.067 kb on - strandat 388.067 kb on - strandat 388.067 kb on - strandat 388.067 kb on - strandat 388.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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385,842 + +1.2
385,842 + -0.6
385,842 + +0.0
385,842 + -1.8
385,842 + +0.4
385,843 - -2.4
385,843 - +1.0
385,843 - -0.6
385,843 - +0.3
385,843 - +0.4
385,843 - +0.4
385,843 - +0.0
386,512 + MPMX19_04081 0.50 -0.0
386,512 + MPMX19_04081 0.50 +0.9
386,512 + MPMX19_04081 0.50 -0.4
386,513 - MPMX19_04081 0.51 -0.1
386,513 - MPMX19_04081 0.51 -0.3
386,583 + +0.2
386,583 + -0.2
386,583 + +0.8
386,584 - +0.7
386,584 - -0.9
386,584 - +0.3
386,686 + MPMX19_04082 0.16 -0.7
386,687 - MPMX19_04082 0.16 -1.3
386,687 - MPMX19_04082 0.16 -0.2
386,687 - MPMX19_04082 0.16 -0.6
386,687 - MPMX19_04082 0.16 -0.3
386,687 - MPMX19_04082 0.16 -0.2
386,687 - MPMX19_04082 0.16 -1.9
386,687 - MPMX19_04082 0.16 +0.0
386,687 - MPMX19_04082 0.16 -0.1
386,687 - MPMX19_04082 0.16 +0.0
386,687 - MPMX19_04082 0.16 +0.4
386,710 + MPMX19_04082 0.20 -0.0
386,710 + MPMX19_04082 0.20 +0.6
386,710 + MPMX19_04082 0.20 -1.4
386,710 + MPMX19_04082 0.20 +0.6
386,710 + MPMX19_04082 0.20 +1.8
386,710 + MPMX19_04082 0.20 +0.4
386,710 + MPMX19_04082 0.20 -0.6
386,711 - MPMX19_04082 0.20 +1.0
386,711 - MPMX19_04082 0.20 -0.5
386,711 - MPMX19_04082 0.20 +0.6
386,711 - MPMX19_04082 0.20 +0.0
386,711 - MPMX19_04082 0.20 +1.0
386,711 - MPMX19_04082 0.20 +1.0
386,711 - MPMX19_04082 0.20 -0.2
386,711 - MPMX19_04082 0.20 +1.0
386,711 - MPMX19_04082 0.20 -1.4
386,711 - MPMX19_04082 0.20 -0.2
386,711 - MPMX19_04082 0.20 +1.6
386,734 + MPMX19_04082 0.25 +1.0
386,735 - MPMX19_04082 0.25 +1.1
386,735 - MPMX19_04082 0.25 -0.8
387,321 + MPMX19_04083 0.42 +0.5
387,321 + MPMX19_04083 0.42 -2.0
387,321 + MPMX19_04083 0.42 +0.3
387,321 + MPMX19_04083 0.42 -0.2
387,321 + MPMX19_04083 0.42 +0.1
387,321 + MPMX19_04083 0.42 +1.3
387,322 - MPMX19_04083 0.42 +0.2
387,322 - MPMX19_04083 0.42 +1.0
387,411 + MPMX19_04083 0.62 -0.8
387,411 + MPMX19_04083 0.62 -0.4
387,411 + MPMX19_04083 0.62 +0.5
387,411 + MPMX19_04083 0.62 -1.4
387,411 + MPMX19_04083 0.62 +0.0
387,411 + MPMX19_04083 0.62 -0.5
387,411 + MPMX19_04083 0.62 +0.5
387,412 - MPMX19_04083 0.62 -0.4
387,412 - MPMX19_04083 0.62 -1.1
387,412 - MPMX19_04083 0.62 -0.3
387,412 - MPMX19_04083 0.62 -0.9
387,412 - MPMX19_04083 0.62 +0.5
387,560 + -1.1
387,560 + -0.2
387,560 + -0.8
387,561 - -0.8
387,561 - +0.2
387,862 + MPMX19_04084 0.60 -0.7
387,862 + MPMX19_04084 0.60 +0.2
387,862 + MPMX19_04084 0.60 +0.2
387,862 + MPMX19_04084 0.60 +0.7
387,862 + MPMX19_04084 0.60 +0.7
387,862 + MPMX19_04084 0.60 -0.8
387,862 + MPMX19_04084 0.60 +0.2
387,862 + MPMX19_04084 0.60 -1.5
387,862 + MPMX19_04084 0.60 -1.7
387,863 - MPMX19_04084 0.60 -0.1
387,863 - MPMX19_04084 0.60 -1.2
387,863 - MPMX19_04084 0.60 +0.8
387,863 - MPMX19_04084 0.60 -0.1
387,863 - MPMX19_04084 0.60 -0.5
387,863 - MPMX19_04084 0.60 -0.1
387,863 - MPMX19_04084 0.60 +1.0
388,027 + +0.5
388,027 + -0.4
388,028 - +0.6
388,028 - -1.1
388,028 - +0.5
388,028 - +0.2
388,028 - -0.8
388,028 - +1.3
388,028 - -0.9
388,028 - -0.0
388,054 + -0.1
388,054 + +0.8
388,054 + +1.0
388,054 + -0.1
388,054 + -0.4
388,054 + +0.5
388,054 + -0.8
388,054 + +0.5
388,055 - +0.8
388,055 - +0.6
388,055 - -0.8
388,055 - -0.5
388,055 - +0.2
388,055 - -0.8
388,055 - -0.8
388,055 - +1.0
388,055 - -0.4
388,055 - -0.3
388,055 - -1.0
388,055 - -1.5
388,055 - -1.1
388,055 - -0.8
388,066 + -1.0
388,066 + +0.4
388,066 + -0.3
388,066 + -0.7
388,066 + +0.5
388,066 + -0.9
388,066 + +1.3
388,066 + +0.8
388,066 + -1.9
388,066 + -0.8
388,067 - +0.5
388,067 - -1.4
388,067 - -0.7
388,067 - -1.1
388,067 - +0.6

Or see this region's nucleotide sequence