Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04054

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04053 and MPMX19_04054 overlap by 11 nucleotidesMPMX19_04054 and MPMX19_04055 are separated by 152 nucleotides MPMX19_04053: MPMX19_04053 - Transcriptional regulatory protein OmpR, at 356,544 to 357,293 _04053 MPMX19_04054: MPMX19_04054 - Adaptive-response sensory-kinase SasA, at 357,283 to 358,728 _04054 MPMX19_04055: MPMX19_04055 - 2,5-diketo-D-gluconic acid reductase B, at 358,881 to 359,705 _04055 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 356.396 kb on + strandat 356.416 kb on + strandat 356.416 kb on + strandat 356.416 kb on + strandat 356.416 kb on + strandat 356.427 kb on + strandat 356.427 kb on + strandat 356.428 kb on - strandat 356.428 kb on - strandat 356.453 kb on + strandat 356.454 kb on - strandat 356.454 kb on - strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.475 kb on + strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.476 kb on - strandat 356.844 kb on + strand, within MPMX19_04053at 356.844 kb on + strand, within MPMX19_04053at 356.844 kb on + strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 356.845 kb on - strand, within MPMX19_04053at 357.033 kb on + strand, within MPMX19_04053at 357.033 kb on + strand, within MPMX19_04053at 357.034 kb on - strand, within MPMX19_04053at 357.034 kb on - strand, within MPMX19_04053at 357.034 kb on - strand, within MPMX19_04053at 357.225 kb on + strandat 357.225 kb on + strandat 357.225 kb on + strandat 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.733 kb on + strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 357.734 kb on - strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.105 kb on + strand, within MPMX19_04054at 358.106 kb on - strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.264 kb on + strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.265 kb on - strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.291 kb on + strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.292 kb on - strand, within MPMX19_04054at 358.453 kb on + strand, within MPMX19_04054at 358.453 kb on + strand, within MPMX19_04054at 358.454 kb on - strand, within MPMX19_04054at 358.454 kb on - strand, within MPMX19_04054at 358.831 kb on + strandat 358.831 kb on + strandat 358.832 kb on - strandat 358.860 kb on + strandat 358.860 kb on + strandat 358.860 kb on + strandat 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.037 kb on + strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.038 kb on - strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.155 kb on + strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.156 kb on - strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.158 kb on + strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.219 kb on - strand, within MPMX19_04055at 359.414 kb on + strand, within MPMX19_04055at 359.414 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.473 kb on + strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.474 kb on - strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.566 kb on + strand, within MPMX19_04055at 359.567 kb on - strand, within MPMX19_04055at 359.567 kb on - strand, within MPMX19_04055

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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356,396 + -2.1
356,416 + -0.6
356,416 + +0.0
356,416 + -1.3
356,416 + +0.0
356,427 + +0.1
356,427 + -0.8
356,428 - -1.2
356,428 - +0.6
356,453 + +1.7
356,454 - -0.3
356,454 - -0.2
356,475 + -0.2
356,475 + +0.0
356,475 + -0.1
356,475 + -1.8
356,475 + -1.5
356,475 + -0.2
356,475 + +0.8
356,475 + +0.0
356,476 - -1.1
356,476 - -0.6
356,476 - -1.4
356,476 - -0.7
356,476 - -1.1
356,476 - -0.7
356,844 + MPMX19_04053 0.40 +0.2
356,844 + MPMX19_04053 0.40 +0.4
356,844 + MPMX19_04053 0.40 -0.5
356,845 - MPMX19_04053 0.40 +0.0
356,845 - MPMX19_04053 0.40 +0.6
356,845 - MPMX19_04053 0.40 +1.5
356,845 - MPMX19_04053 0.40 -1.4
357,033 + MPMX19_04053 0.65 -0.8
357,033 + MPMX19_04053 0.65 +0.4
357,034 - MPMX19_04053 0.65 -0.3
357,034 - MPMX19_04053 0.65 +0.0
357,034 - MPMX19_04053 0.65 -1.2
357,225 + -0.9
357,225 + +1.4
357,225 + -0.4
357,733 + MPMX19_04054 0.31 -0.3
357,733 + MPMX19_04054 0.31 +0.3
357,733 + MPMX19_04054 0.31 +0.6
357,733 + MPMX19_04054 0.31 -0.6
357,733 + MPMX19_04054 0.31 +0.0
357,733 + MPMX19_04054 0.31 -1.0
357,733 + MPMX19_04054 0.31 +0.8
357,733 + MPMX19_04054 0.31 +0.5
357,733 + MPMX19_04054 0.31 +0.1
357,733 + MPMX19_04054 0.31 -0.4
357,733 + MPMX19_04054 0.31 +0.3
357,733 + MPMX19_04054 0.31 -1.2
357,733 + MPMX19_04054 0.31 +1.0
357,733 + MPMX19_04054 0.31 -0.2
357,734 - MPMX19_04054 0.31 +1.3
357,734 - MPMX19_04054 0.31 -0.2
357,734 - MPMX19_04054 0.31 -2.6
357,734 - MPMX19_04054 0.31 +0.1
357,734 - MPMX19_04054 0.31 -1.6
357,734 - MPMX19_04054 0.31 -0.7
357,734 - MPMX19_04054 0.31 +0.7
357,734 - MPMX19_04054 0.31 -1.0
357,734 - MPMX19_04054 0.31 -1.2
358,105 + MPMX19_04054 0.57 +0.0
358,105 + MPMX19_04054 0.57 +0.8
358,105 + MPMX19_04054 0.57 -0.8
358,105 + MPMX19_04054 0.57 +0.9
358,105 + MPMX19_04054 0.57 +1.0
358,106 - MPMX19_04054 0.57 +1.6
358,264 + MPMX19_04054 0.68 -0.5
358,264 + MPMX19_04054 0.68 +0.2
358,264 + MPMX19_04054 0.68 +0.8
358,264 + MPMX19_04054 0.68 -0.2
358,265 - MPMX19_04054 0.68 -0.2
358,265 - MPMX19_04054 0.68 -1.6
358,265 - MPMX19_04054 0.68 +1.1
358,265 - MPMX19_04054 0.68 +0.6
358,265 - MPMX19_04054 0.68 -0.7
358,291 + MPMX19_04054 0.70 -0.6
358,291 + MPMX19_04054 0.70 +1.0
358,291 + MPMX19_04054 0.70 -0.7
358,291 + MPMX19_04054 0.70 +2.0
358,292 - MPMX19_04054 0.70 +0.0
358,292 - MPMX19_04054 0.70 +0.3
358,292 - MPMX19_04054 0.70 +0.4
358,292 - MPMX19_04054 0.70 -0.8
358,292 - MPMX19_04054 0.70 -0.4
358,292 - MPMX19_04054 0.70 -1.2
358,453 + MPMX19_04054 0.81 +0.8
358,453 + MPMX19_04054 0.81 -0.5
358,454 - MPMX19_04054 0.81 -1.2
358,454 - MPMX19_04054 0.81 +0.2
358,831 + +0.9
358,831 + +0.1
358,832 - +0.5
358,860 + +2.0
358,860 + +0.2
358,860 + -1.4
359,037 + MPMX19_04055 0.19 -1.3
359,037 + MPMX19_04055 0.19 +0.7
359,037 + MPMX19_04055 0.19 +0.4
359,037 + MPMX19_04055 0.19 +0.2
359,038 - MPMX19_04055 0.19 +1.0
359,038 - MPMX19_04055 0.19 -1.0
359,038 - MPMX19_04055 0.19 +1.0
359,155 + MPMX19_04055 0.33 +0.4
359,155 + MPMX19_04055 0.33 -0.8
359,155 + MPMX19_04055 0.33 -0.2
359,155 + MPMX19_04055 0.33 -0.4
359,155 + MPMX19_04055 0.33 +0.4
359,155 + MPMX19_04055 0.33 +0.4
359,155 + MPMX19_04055 0.33 +0.1
359,155 + MPMX19_04055 0.33 -2.3
359,155 + MPMX19_04055 0.33 -1.7
359,155 + MPMX19_04055 0.33 -0.4
359,155 + MPMX19_04055 0.33 -0.4
359,155 + MPMX19_04055 0.33 -1.0
359,156 - MPMX19_04055 0.33 -0.6
359,156 - MPMX19_04055 0.33 -0.5
359,156 - MPMX19_04055 0.33 +0.0
359,156 - MPMX19_04055 0.33 +0.4
359,156 - MPMX19_04055 0.33 +0.6
359,156 - MPMX19_04055 0.33 -1.7
359,156 - MPMX19_04055 0.33 -0.4
359,156 - MPMX19_04055 0.33 -0.6
359,156 - MPMX19_04055 0.33 -1.4
359,156 - MPMX19_04055 0.33 -0.7
359,156 - MPMX19_04055 0.33 +0.5
359,156 - MPMX19_04055 0.33 -1.6
359,156 - MPMX19_04055 0.33 +0.4
359,156 - MPMX19_04055 0.33 -0.5
359,156 - MPMX19_04055 0.33 -0.6
359,156 - MPMX19_04055 0.33 -0.2
359,158 + MPMX19_04055 0.34 -2.2
359,158 + MPMX19_04055 0.34 +1.0
359,158 + MPMX19_04055 0.34 -1.0
359,158 + MPMX19_04055 0.34 +0.0
359,219 - MPMX19_04055 0.41 -0.6
359,219 - MPMX19_04055 0.41 -0.6
359,219 - MPMX19_04055 0.41 -1.2
359,414 + MPMX19_04055 0.65 +1.8
359,414 + MPMX19_04055 0.65 -0.4
359,473 + MPMX19_04055 0.72 -0.6
359,473 + MPMX19_04055 0.72 -2.6
359,473 + MPMX19_04055 0.72 +0.3
359,473 + MPMX19_04055 0.72 -0.5
359,473 + MPMX19_04055 0.72 -2.2
359,473 + MPMX19_04055 0.72 -0.5
359,473 + MPMX19_04055 0.72 +0.4
359,473 + MPMX19_04055 0.72 -0.5
359,473 + MPMX19_04055 0.72 -0.2
359,473 + MPMX19_04055 0.72 +0.1
359,474 - MPMX19_04055 0.72 -0.8
359,474 - MPMX19_04055 0.72 -2.1
359,474 - MPMX19_04055 0.72 +0.6
359,474 - MPMX19_04055 0.72 -0.7
359,474 - MPMX19_04055 0.72 -0.4
359,474 - MPMX19_04055 0.72 +2.5
359,474 - MPMX19_04055 0.72 +0.5
359,474 - MPMX19_04055 0.72 -1.0
359,474 - MPMX19_04055 0.72 -0.6
359,474 - MPMX19_04055 0.72 -1.0
359,566 + MPMX19_04055 0.83 -0.8
359,566 + MPMX19_04055 0.83 +1.6
359,566 + MPMX19_04055 0.83 -1.2
359,567 - MPMX19_04055 0.83 -0.6
359,567 - MPMX19_04055 0.83 -0.7

Or see this region's nucleotide sequence