Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04045

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04044 and MPMX19_04045 are separated by 16 nucleotidesMPMX19_04045 and MPMX19_04046 are separated by 449 nucleotides MPMX19_04044: MPMX19_04044 - Arsenical-resistance protein Acr3, at 346,229 to 347,302 _04044 MPMX19_04045: MPMX19_04045 - Arsenate reductase, at 347,319 to 348,230 _04045 MPMX19_04046: MPMX19_04046 - hypothetical protein, at 348,680 to 349,567 _04046 Position (kb) 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.464 kb on + strand, within MPMX19_04044at 346.464 kb on + strand, within MPMX19_04044at 346.486 kb on - strand, within MPMX19_04044at 346.486 kb on - strand, within MPMX19_04044at 346.486 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.705 kb on - strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.833 kb on + strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.834 kb on - strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 346.920 kb on + strand, within MPMX19_04044at 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.241 kb on + strandat 347.242 kb on - strandat 347.242 kb on - strandat 347.283 kb on + strandat 347.283 kb on + strandat 347.284 kb on - strandat 347.284 kb on - strandat 347.320 kb on + strandat 347.320 kb on + strandat 347.579 kb on + strand, within MPMX19_04045at 347.580 kb on - strand, within MPMX19_04045at 347.580 kb on - strand, within MPMX19_04045at 347.580 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.672 kb on - strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.803 kb on + strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 347.804 kb on - strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.001 kb on + strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.002 kb on - strand, within MPMX19_04045at 348.224 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.389 kb on + strandat 348.390 kb on - strandat 348.390 kb on - strandat 348.454 kb on + strandat 348.454 kb on + strandat 348.454 kb on + strandat 348.455 kb on - strandat 348.506 kb on + strandat 348.506 kb on + strandat 349.017 kb on + strand, within MPMX19_04046at 349.018 kb on - strand, within MPMX19_04046at 349.018 kb on - strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.059 kb on + strand, within MPMX19_04046at 349.074 kb on + strand, within MPMX19_04046at 349.074 kb on + strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046at 349.075 kb on - strand, within MPMX19_04046

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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346,464 + MPMX19_04044 0.22 -0.8
346,464 + MPMX19_04044 0.22 +1.6
346,486 - MPMX19_04044 0.24 -0.5
346,486 - MPMX19_04044 0.24 -1.8
346,486 - MPMX19_04044 0.24 +0.2
346,705 - MPMX19_04044 0.44 -0.4
346,705 - MPMX19_04044 0.44 +0.2
346,705 - MPMX19_04044 0.44 -0.9
346,705 - MPMX19_04044 0.44 -0.4
346,705 - MPMX19_04044 0.44 +0.0
346,705 - MPMX19_04044 0.44 +1.3
346,705 - MPMX19_04044 0.44 +0.0
346,705 - MPMX19_04044 0.44 -1.3
346,833 + MPMX19_04044 0.56 -0.6
346,833 + MPMX19_04044 0.56 -1.3
346,833 + MPMX19_04044 0.56 -0.3
346,833 + MPMX19_04044 0.56 +0.6
346,833 + MPMX19_04044 0.56 -1.4
346,833 + MPMX19_04044 0.56 +0.4
346,834 - MPMX19_04044 0.56 -0.8
346,834 - MPMX19_04044 0.56 +1.6
346,834 - MPMX19_04044 0.56 +0.4
346,834 - MPMX19_04044 0.56 -0.7
346,834 - MPMX19_04044 0.56 -0.5
346,834 - MPMX19_04044 0.56 +0.8
346,834 - MPMX19_04044 0.56 -0.2
346,920 + MPMX19_04044 0.64 +0.4
346,920 + MPMX19_04044 0.64 +0.1
346,920 + MPMX19_04044 0.64 -1.0
346,920 + MPMX19_04044 0.64 -0.2
346,920 + MPMX19_04044 0.64 -0.7
346,920 + MPMX19_04044 0.64 +1.8
346,920 + MPMX19_04044 0.64 -2.8
346,920 + MPMX19_04044 0.64 -1.2
347,241 + +0.9
347,241 + +0.7
347,241 + +0.0
347,241 + +0.0
347,241 + +0.2
347,241 + -1.1
347,242 - +0.9
347,242 - -1.3
347,283 + -0.8
347,283 + +0.4
347,284 - -1.8
347,284 - -1.4
347,320 + -0.1
347,320 + +0.3
347,579 + MPMX19_04045 0.29 -0.9
347,580 - MPMX19_04045 0.29 +1.3
347,580 - MPMX19_04045 0.29 -0.4
347,580 - MPMX19_04045 0.29 -0.8
347,672 - MPMX19_04045 0.39 -0.3
347,672 - MPMX19_04045 0.39 -1.9
347,672 - MPMX19_04045 0.39 -0.5
347,672 - MPMX19_04045 0.39 +0.7
347,672 - MPMX19_04045 0.39 -1.2
347,672 - MPMX19_04045 0.39 +1.3
347,803 + MPMX19_04045 0.53 -0.9
347,803 + MPMX19_04045 0.53 -0.7
347,803 + MPMX19_04045 0.53 -1.6
347,803 + MPMX19_04045 0.53 +0.2
347,803 + MPMX19_04045 0.53 -0.8
347,803 + MPMX19_04045 0.53 -2.2
347,803 + MPMX19_04045 0.53 +0.7
347,803 + MPMX19_04045 0.53 -1.0
347,804 - MPMX19_04045 0.53 -0.9
347,804 - MPMX19_04045 0.53 -1.2
347,804 - MPMX19_04045 0.53 +0.0
347,804 - MPMX19_04045 0.53 -0.6
347,804 - MPMX19_04045 0.53 +0.3
347,804 - MPMX19_04045 0.53 -1.7
347,804 - MPMX19_04045 0.53 -1.1
347,804 - MPMX19_04045 0.53 -1.8
348,001 + MPMX19_04045 0.75 -0.4
348,001 + MPMX19_04045 0.75 -1.6
348,001 + MPMX19_04045 0.75 -0.6
348,001 + MPMX19_04045 0.75 +0.3
348,002 - MPMX19_04045 0.75 -1.1
348,002 - MPMX19_04045 0.75 +1.1
348,002 - MPMX19_04045 0.75 -0.6
348,002 - MPMX19_04045 0.75 -1.2
348,002 - MPMX19_04045 0.75 -0.6
348,002 - MPMX19_04045 0.75 -0.4
348,224 + -0.8
348,389 + -0.3
348,389 + -0.5
348,389 + +0.5
348,389 + -1.7
348,389 + +0.0
348,390 - +0.0
348,390 - -0.7
348,454 + +0.4
348,454 + -2.1
348,454 + +1.0
348,455 - +0.1
348,506 + -0.7
348,506 + -0.3
349,017 + MPMX19_04046 0.38 +0.6
349,018 - MPMX19_04046 0.38 -0.2
349,018 - MPMX19_04046 0.38 +0.8
349,059 + MPMX19_04046 0.43 +0.3
349,059 + MPMX19_04046 0.43 +1.3
349,059 + MPMX19_04046 0.43 -0.8
349,059 + MPMX19_04046 0.43 -1.2
349,074 + MPMX19_04046 0.44 -0.4
349,074 + MPMX19_04046 0.44 -2.2
349,075 - MPMX19_04046 0.44 -1.3
349,075 - MPMX19_04046 0.44 -1.6
349,075 - MPMX19_04046 0.44 -0.0
349,075 - MPMX19_04046 0.44 -0.3

Or see this region's nucleotide sequence