Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03921

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03920 and MPMX19_03921 overlap by 4 nucleotidesMPMX19_03921 and MPMX19_03922 are separated by 72 nucleotidesMPMX19_03922 and MPMX19_03923 overlap by 4 nucleotidesMPMX19_03923 and MPMX19_03924 are separated by 178 nucleotides MPMX19_03920: MPMX19_03920 - Efflux pump membrane transporter BepE, at 197,994 to 201,218 _03920 MPMX19_03921: MPMX19_03921 - hypothetical protein, at 201,215 to 202,282 _03921 MPMX19_03922: MPMX19_03922 - Transcriptional activator HlyU, at 202,355 to 202,702 _03922 MPMX19_03923: MPMX19_03923 - hypothetical protein, at 202,699 to 202,902 _03923 MPMX19_03924: MPMX19_03924 - hypothetical protein, at 203,081 to 203,332 _03924 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.431 kb on + strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.432 kb on - strand, within MPMX19_03920at 200.729 kb on - strand, within MPMX19_03920at 200.729 kb on - strand, within MPMX19_03920at 200.729 kb on - strand, within MPMX19_03920at 200.729 kb on - strand, within MPMX19_03920at 200.868 kb on + strand, within MPMX19_03920at 200.868 kb on + strand, within MPMX19_03920at 200.869 kb on - strand, within MPMX19_03920at 200.869 kb on - strand, within MPMX19_03920at 200.869 kb on - strand, within MPMX19_03920at 200.869 kb on - strand, within MPMX19_03920at 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on + strandat 200.962 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 200.963 kb on - strandat 201.429 kb on + strand, within MPMX19_03921at 201.429 kb on + strand, within MPMX19_03921at 201.429 kb on + strand, within MPMX19_03921at 201.429 kb on + strand, within MPMX19_03921at 201.430 kb on - strand, within MPMX19_03921at 201.430 kb on - strand, within MPMX19_03921at 201.430 kb on - strand, within MPMX19_03921at 201.430 kb on - strand, within MPMX19_03921at 201.430 kb on - strand, within MPMX19_03921at 201.430 kb on - strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.681 kb on + strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 201.682 kb on - strand, within MPMX19_03921at 202.580 kb on + strand, within MPMX19_03922at 202.580 kb on + strand, within MPMX19_03922at 202.580 kb on + strand, within MPMX19_03922at 202.580 kb on + strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.581 kb on - strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.634 kb on + strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.635 kb on - strand, within MPMX19_03922at 202.951 kb on + strandat 202.951 kb on + strandat 202.951 kb on + strandat 202.951 kb on + strandat 202.951 kb on + strandat 202.952 kb on - strandat 202.952 kb on - strandat 203.050 kb on + strandat 203.050 kb on + strandat 203.050 kb on + strandat 203.050 kb on + strandat 203.051 kb on - strandat 203.051 kb on - strandat 203.051 kb on - strandat 203.259 kb on + strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924at 203.260 kb on - strand, within MPMX19_03924

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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200,431 + MPMX19_03920 0.76 -0.1
200,431 + MPMX19_03920 0.76 -1.7
200,431 + MPMX19_03920 0.76 -0.3
200,431 + MPMX19_03920 0.76 +0.4
200,431 + MPMX19_03920 0.76 -1.3
200,431 + MPMX19_03920 0.76 -0.3
200,431 + MPMX19_03920 0.76 +0.0
200,431 + MPMX19_03920 0.76 +0.0
200,431 + MPMX19_03920 0.76 -0.8
200,431 + MPMX19_03920 0.76 +1.0
200,431 + MPMX19_03920 0.76 +0.4
200,432 - MPMX19_03920 0.76 -1.1
200,432 - MPMX19_03920 0.76 -0.6
200,432 - MPMX19_03920 0.76 -1.1
200,432 - MPMX19_03920 0.76 +1.0
200,432 - MPMX19_03920 0.76 +1.7
200,432 - MPMX19_03920 0.76 -1.0
200,432 - MPMX19_03920 0.76 -0.4
200,432 - MPMX19_03920 0.76 -0.1
200,432 - MPMX19_03920 0.76 +0.4
200,432 - MPMX19_03920 0.76 -0.3
200,432 - MPMX19_03920 0.76 -0.9
200,729 - MPMX19_03920 0.85 +1.0
200,729 - MPMX19_03920 0.85 -0.1
200,729 - MPMX19_03920 0.85 -0.0
200,729 - MPMX19_03920 0.85 -1.6
200,868 + MPMX19_03920 0.89 -0.4
200,868 + MPMX19_03920 0.89 +0.0
200,869 - MPMX19_03920 0.89 -2.4
200,869 - MPMX19_03920 0.89 -1.3
200,869 - MPMX19_03920 0.89 +0.7
200,869 - MPMX19_03920 0.89 +0.4
200,962 + +1.4
200,962 + -1.4
200,962 + -1.4
200,962 + -1.0
200,962 + +0.2
200,962 + -2.4
200,962 + -0.9
200,962 + -1.3
200,962 + -0.8
200,962 - +0.4
200,963 - +0.3
200,963 - -1.0
200,963 - +0.2
200,963 - +1.0
200,963 - -0.5
200,963 - -1.7
200,963 - -0.6
200,963 - +0.4
200,963 - -1.8
200,963 - -0.5
201,429 + MPMX19_03921 0.20 +1.3
201,429 + MPMX19_03921 0.20 -0.3
201,429 + MPMX19_03921 0.20 +1.2
201,429 + MPMX19_03921 0.20 +0.3
201,430 - MPMX19_03921 0.20 -0.3
201,430 - MPMX19_03921 0.20 -1.3
201,430 - MPMX19_03921 0.20 -2.0
201,430 - MPMX19_03921 0.20 +1.7
201,430 - MPMX19_03921 0.20 +0.2
201,430 - MPMX19_03921 0.20 +0.3
201,681 + MPMX19_03921 0.44 +0.3
201,681 + MPMX19_03921 0.44 +0.6
201,681 + MPMX19_03921 0.44 -0.3
201,681 + MPMX19_03921 0.44 +1.0
201,681 + MPMX19_03921 0.44 +0.3
201,681 + MPMX19_03921 0.44 -0.4
201,681 + MPMX19_03921 0.44 -0.1
201,681 + MPMX19_03921 0.44 -2.1
201,681 + MPMX19_03921 0.44 +0.2
201,681 + MPMX19_03921 0.44 +0.8
201,681 + MPMX19_03921 0.44 -1.6
201,681 + MPMX19_03921 0.44 +0.2
201,681 + MPMX19_03921 0.44 +0.6
201,681 + MPMX19_03921 0.44 -1.0
201,682 - MPMX19_03921 0.44 +0.0
201,682 - MPMX19_03921 0.44 -1.3
201,682 - MPMX19_03921 0.44 -1.9
201,682 - MPMX19_03921 0.44 -0.6
201,682 - MPMX19_03921 0.44 +1.1
201,682 - MPMX19_03921 0.44 -0.1
201,682 - MPMX19_03921 0.44 -0.6
201,682 - MPMX19_03921 0.44 -0.7
201,682 - MPMX19_03921 0.44 -0.6
201,682 - MPMX19_03921 0.44 -2.1
201,682 - MPMX19_03921 0.44 -2.0
201,682 - MPMX19_03921 0.44 -1.1
201,682 - MPMX19_03921 0.44 -1.3
201,682 - MPMX19_03921 0.44 -0.2
201,682 - MPMX19_03921 0.44 -0.1
201,682 - MPMX19_03921 0.44 +1.6
201,682 - MPMX19_03921 0.44 +0.2
201,682 - MPMX19_03921 0.44 +0.4
201,682 - MPMX19_03921 0.44 -1.0
201,682 - MPMX19_03921 0.44 -0.5
202,580 + MPMX19_03922 0.65 -1.4
202,580 + MPMX19_03922 0.65 -0.3
202,580 + MPMX19_03922 0.65 -0.2
202,580 + MPMX19_03922 0.65 +0.2
202,581 - MPMX19_03922 0.65 -0.2
202,581 - MPMX19_03922 0.65 +0.6
202,581 - MPMX19_03922 0.65 +1.3
202,581 - MPMX19_03922 0.65 -0.3
202,581 - MPMX19_03922 0.65 -0.8
202,581 - MPMX19_03922 0.65 +0.2
202,634 + MPMX19_03922 0.80 -1.3
202,634 + MPMX19_03922 0.80 +0.9
202,634 + MPMX19_03922 0.80 -0.6
202,634 + MPMX19_03922 0.80 -1.0
202,634 + MPMX19_03922 0.80 +0.3
202,634 + MPMX19_03922 0.80 -0.8
202,634 + MPMX19_03922 0.80 +0.8
202,634 + MPMX19_03922 0.80 -2.1
202,634 + MPMX19_03922 0.80 +0.2
202,634 + MPMX19_03922 0.80 -1.0
202,634 + MPMX19_03922 0.80 -1.4
202,634 + MPMX19_03922 0.80 +1.0
202,634 + MPMX19_03922 0.80 -0.2
202,635 - MPMX19_03922 0.80 -0.3
202,635 - MPMX19_03922 0.80 -1.0
202,635 - MPMX19_03922 0.80 +0.1
202,635 - MPMX19_03922 0.80 +0.7
202,635 - MPMX19_03922 0.80 -0.6
202,951 + -1.0
202,951 + -0.8
202,951 + +0.3
202,951 + +1.6
202,951 + -0.4
202,952 - -0.3
202,952 - -0.4
203,050 + -0.8
203,050 + -0.7
203,050 + -1.6
203,050 + +0.0
203,051 - -2.4
203,051 - -1.3
203,051 - -0.1
203,259 + MPMX19_03924 0.71 -1.0
203,260 - MPMX19_03924 0.71 +0.1
203,260 - MPMX19_03924 0.71 -1.1
203,260 - MPMX19_03924 0.71 +0.3
203,260 - MPMX19_03924 0.71 -0.7

Or see this region's nucleotide sequence