Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03890

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03889 and MPMX19_03890 are separated by 27 nucleotidesMPMX19_03890 and MPMX19_03891 are separated by 3 nucleotidesMPMX19_03891 and MPMX19_03892 are separated by 99 nucleotides MPMX19_03889: MPMX19_03889 - hypothetical protein, at 164,066 to 165,088 _03889 MPMX19_03890: MPMX19_03890 - Riboflavin transport system permease protein RibX, at 165,116 to 165,889 _03890 MPMX19_03891: MPMX19_03891 - Aliphatic sulfonates import ATP-binding protein SsuB, at 165,893 to 166,747 _03891 MPMX19_03892: MPMX19_03892 - HTH-type transcriptional repressor NanR, at 166,847 to 167,698 _03892 Position (kb) 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 164.160 kb on + strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.160 kb on + strandat 164.161 kb on - strandat 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.259 kb on + strand, within MPMX19_03889at 164.260 kb on - strand, within MPMX19_03889at 164.310 kb on + strand, within MPMX19_03889at 164.310 kb on + strand, within MPMX19_03889at 164.311 kb on - strand, within MPMX19_03889at 164.448 kb on + strand, within MPMX19_03889at 164.448 kb on + strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.449 kb on - strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.487 kb on + strand, within MPMX19_03889at 164.488 kb on - strand, within MPMX19_03889at 164.488 kb on - strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.784 kb on + strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.785 kb on - strand, within MPMX19_03889at 164.862 kb on + strand, within MPMX19_03889at 164.862 kb on + strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.863 kb on - strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.946 kb on + strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 164.947 kb on - strand, within MPMX19_03889at 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.189 kb on + strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.190 kb on - strandat 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.612 kb on + strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.613 kb on - strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.624 kb on + strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.625 kb on - strand, within MPMX19_03890at 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.882 kb on + strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 165.883 kb on - strandat 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.368 kb on + strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.369 kb on - strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.529 kb on + strand, within MPMX19_03891at 166.530 kb on - strand, within MPMX19_03891at 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strandat 166.754 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
164,160 + -0.4
164,160 + -0.4
164,160 + +0.0
164,160 + +0.0
164,161 - -0.3
164,259 + MPMX19_03889 0.19 -1.3
164,259 + MPMX19_03889 0.19 +0.7
164,259 + MPMX19_03889 0.19 +1.3
164,259 + MPMX19_03889 0.19 -1.1
164,259 + MPMX19_03889 0.19 -1.3
164,260 - MPMX19_03889 0.19 +0.8
164,310 + MPMX19_03889 0.24 +0.2
164,310 + MPMX19_03889 0.24 -1.8
164,311 - MPMX19_03889 0.24 -1.1
164,448 + MPMX19_03889 0.37 -0.7
164,448 + MPMX19_03889 0.37 -1.5
164,449 - MPMX19_03889 0.37 +0.8
164,449 - MPMX19_03889 0.37 +0.2
164,449 - MPMX19_03889 0.37 -0.5
164,449 - MPMX19_03889 0.37 -0.9
164,449 - MPMX19_03889 0.37 -0.8
164,449 - MPMX19_03889 0.37 +1.0
164,487 + MPMX19_03889 0.41 -0.4
164,487 + MPMX19_03889 0.41 -1.5
164,487 + MPMX19_03889 0.41 +0.3
164,487 + MPMX19_03889 0.41 -1.3
164,487 + MPMX19_03889 0.41 +0.0
164,488 - MPMX19_03889 0.41 -1.5
164,488 - MPMX19_03889 0.41 -0.3
164,784 + MPMX19_03889 0.70 -1.0
164,784 + MPMX19_03889 0.70 +1.0
164,784 + MPMX19_03889 0.70 -1.4
164,784 + MPMX19_03889 0.70 -0.1
164,784 + MPMX19_03889 0.70 -0.3
164,784 + MPMX19_03889 0.70 +1.2
164,785 - MPMX19_03889 0.70 +2.6
164,785 - MPMX19_03889 0.70 -2.0
164,785 - MPMX19_03889 0.70 +1.5
164,785 - MPMX19_03889 0.70 -1.7
164,785 - MPMX19_03889 0.70 +0.3
164,862 + MPMX19_03889 0.78 -0.1
164,862 + MPMX19_03889 0.78 +1.1
164,863 - MPMX19_03889 0.78 -1.2
164,863 - MPMX19_03889 0.78 -2.2
164,863 - MPMX19_03889 0.78 +0.6
164,863 - MPMX19_03889 0.78 -0.7
164,946 + MPMX19_03889 0.86 -0.8
164,946 + MPMX19_03889 0.86 -1.0
164,946 + MPMX19_03889 0.86 +0.6
164,947 - MPMX19_03889 0.86 +1.0
164,947 - MPMX19_03889 0.86 -0.3
164,947 - MPMX19_03889 0.86 +0.0
165,189 + -0.1
165,189 + -1.0
165,189 + +0.2
165,189 + -1.3
165,189 + +0.0
165,189 + -0.8
165,189 + -0.5
165,189 + -0.9
165,189 + +0.5
165,189 + +0.5
165,190 - -1.0
165,190 - -0.1
165,190 - +0.5
165,190 - -0.3
165,190 - -0.8
165,190 - +1.5
165,190 - +0.8
165,612 + MPMX19_03890 0.64 -2.4
165,612 + MPMX19_03890 0.64 -1.1
165,612 + MPMX19_03890 0.64 -0.3
165,613 - MPMX19_03890 0.64 -0.7
165,613 - MPMX19_03890 0.64 -0.8
165,613 - MPMX19_03890 0.64 +1.6
165,613 - MPMX19_03890 0.64 +1.2
165,624 + MPMX19_03890 0.66 +0.5
165,624 + MPMX19_03890 0.66 -1.9
165,624 + MPMX19_03890 0.66 +1.5
165,625 - MPMX19_03890 0.66 -0.7
165,625 - MPMX19_03890 0.66 -2.6
165,625 - MPMX19_03890 0.66 -1.0
165,882 + +0.1
165,882 + -0.1
165,882 + -0.3
165,882 + -0.8
165,883 - -0.2
165,883 - -0.5
165,883 - -0.4
165,883 - -0.2
165,883 - -0.1
165,883 - -1.3
165,883 - +0.3
165,883 - -0.1
165,883 - -0.7
166,368 + MPMX19_03891 0.56 -0.7
166,368 + MPMX19_03891 0.56 +0.8
166,368 + MPMX19_03891 0.56 -0.1
166,369 - MPMX19_03891 0.56 +2.0
166,369 - MPMX19_03891 0.56 -0.3
166,529 + MPMX19_03891 0.74 +0.3
166,529 + MPMX19_03891 0.74 -0.3
166,529 + MPMX19_03891 0.74 -1.3
166,529 + MPMX19_03891 0.74 -0.3
166,529 + MPMX19_03891 0.74 -1.0
166,530 - MPMX19_03891 0.75 +0.9
166,754 + +0.3
166,754 + -0.5
166,754 + -0.5
166,754 + +0.8
166,754 + -0.0

Or see this region's nucleotide sequence