Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03771 and MPMX19_03772 are separated by 167 nucleotides MPMX19_03772 and MPMX19_03773 overlap by 8 nucleotides MPMX19_03773 and MPMX19_03774 overlap by 8 nucleotides MPMX19_03774 and MPMX19_03775 are separated by 2 nucleotides
MPMX19_03771: MPMX19_03771 - hypothetical protein, at 15,639 to 15,959
_03771
MPMX19_03772: MPMX19_03772 - hypothetical protein, at 16,127 to 16,612
_03772
MPMX19_03773: MPMX19_03773 - hypothetical protein, at 16,605 to 18,788
_03773
MPMX19_03774: MPMX19_03774 - hypothetical protein, at 18,781 to 19,557
_03774
MPMX19_03775: MPMX19_03775 - hypothetical protein, at 19,560 to 20,135
_03775
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.623 kb on - strand at 15.649 kb on - strand at 15.762 kb on - strand, within MPMX19_03771 at 15.762 kb on - strand, within MPMX19_03771 at 15.871 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.912 kb on - strand, within MPMX19_03771 at 15.958 kb on - strand at 15.958 kb on - strand at 15.958 kb on - strand at 15.958 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 15.990 kb on - strand at 16.333 kb on + strand, within MPMX19_03772 at 16.333 kb on + strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.334 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 16.458 kb on - strand, within MPMX19_03772 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.120 kb on - strand, within MPMX19_03773 at 17.136 kb on + strand, within MPMX19_03773 at 17.137 kb on - strand, within MPMX19_03773 at 17.254 kb on - strand, within MPMX19_03773 at 17.334 kb on + strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.335 kb on - strand, within MPMX19_03773 at 17.427 kb on + strand, within MPMX19_03773 at 17.427 kb on + strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.428 kb on - strand, within MPMX19_03773 at 17.469 kb on + strand, within MPMX19_03773 at 17.470 kb on - strand, within MPMX19_03773 at 17.663 kb on + strand, within MPMX19_03773 at 17.663 kb on + strand, within MPMX19_03773 at 17.664 kb on - strand, within MPMX19_03773 at 17.664 kb on - strand, within MPMX19_03773 at 17.664 kb on - strand, within MPMX19_03773 at 17.664 kb on - strand, within MPMX19_03773 at 17.664 kb on - strand, within MPMX19_03773 at 17.664 kb on - strand, within MPMX19_03773 at 17.670 kb on + strand, within MPMX19_03773 at 17.670 kb on + strand, within MPMX19_03773 at 17.671 kb on - strand, within MPMX19_03773 at 17.671 kb on - strand, within MPMX19_03773 at 17.671 kb on - strand, within MPMX19_03773 at 17.671 kb on - strand, within MPMX19_03773 at 17.671 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 18.016 kb on - strand, within MPMX19_03773 at 18.016 kb on - strand, within MPMX19_03773 at 18.050 kb on - strand, within MPMX19_03773 at 18.050 kb on - strand, within MPMX19_03773 at 18.229 kb on - strand, within MPMX19_03773 at 18.229 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.367 kb on - strand, within MPMX19_03773 at 18.780 kb on + strand at 18.781 kb on - strand at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.048 kb on + strand, within MPMX19_03774 at 19.048 kb on + strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.572 kb on - strand at 19.578 kb on - strand at 19.578 kb on - strand at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.741 kb on - strand, within MPMX19_03775
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 15,623 - -0.9 15,649 - -0.5 15,762 - MPMX19_03771 0.38 +1.2 15,762 - MPMX19_03771 0.38 -0.3 15,871 - MPMX19_03771 0.72 -1.3 15,912 - MPMX19_03771 0.85 +0.5 15,912 - MPMX19_03771 0.85 +0.1 15,912 - MPMX19_03771 0.85 -1.5 15,912 - MPMX19_03771 0.85 +0.0 15,912 - MPMX19_03771 0.85 -0.1 15,912 - MPMX19_03771 0.85 -1.4 15,912 - MPMX19_03771 0.85 -0.8 15,912 - MPMX19_03771 0.85 -0.6 15,958 - -1.4 15,958 - +1.1 15,958 - -1.0 15,958 - +0.8 15,990 - -0.1 15,990 - -1.4 15,990 - +0.7 15,990 - -1.0 15,990 - +1.6 15,990 - +0.2 16,333 + MPMX19_03772 0.42 -1.4 16,333 + MPMX19_03772 0.42 -1.2 16,334 - MPMX19_03772 0.43 +0.0 16,334 - MPMX19_03772 0.43 -0.8 16,334 - MPMX19_03772 0.43 -0.1 16,334 - MPMX19_03772 0.43 -1.4 16,334 - MPMX19_03772 0.43 -2.5 16,334 - MPMX19_03772 0.43 -1.9 16,334 - MPMX19_03772 0.43 -0.8 16,458 - MPMX19_03772 0.68 +0.2 16,458 - MPMX19_03772 0.68 +0.6 16,458 - MPMX19_03772 0.68 +1.2 17,120 - MPMX19_03773 0.24 -1.8 17,120 - MPMX19_03773 0.24 -1.0 17,120 - MPMX19_03773 0.24 +0.6 17,120 - MPMX19_03773 0.24 -1.4 17,120 - MPMX19_03773 0.24 -0.3 17,136 + MPMX19_03773 0.24 +0.2 17,137 - MPMX19_03773 0.24 -1.9 17,254 - MPMX19_03773 0.30 -2.3 17,334 + MPMX19_03773 0.33 +0.5 17,335 - MPMX19_03773 0.33 -1.2 17,335 - MPMX19_03773 0.33 -0.2 17,335 - MPMX19_03773 0.33 -0.8 17,427 + MPMX19_03773 0.38 -0.4 17,427 + MPMX19_03773 0.38 -0.6 17,428 - MPMX19_03773 0.38 -0.4 17,428 - MPMX19_03773 0.38 +0.9 17,428 - MPMX19_03773 0.38 +0.6 17,428 - MPMX19_03773 0.38 +0.0 17,469 + MPMX19_03773 0.40 +0.0 17,470 - MPMX19_03773 0.40 -0.5 17,663 + MPMX19_03773 0.48 +0.0 17,663 + MPMX19_03773 0.48 -2.5 17,664 - MPMX19_03773 0.48 +0.2 17,664 - MPMX19_03773 0.48 -1.0 17,664 - MPMX19_03773 0.48 -0.0 17,664 - MPMX19_03773 0.48 +0.4 17,664 - MPMX19_03773 0.48 -0.1 17,664 - MPMX19_03773 0.48 -1.0 17,670 + MPMX19_03773 0.49 -0.1 17,670 + MPMX19_03773 0.49 -0.0 17,671 - MPMX19_03773 0.49 -0.8 17,671 - MPMX19_03773 0.49 +2.4 17,671 - MPMX19_03773 0.49 -0.6 17,671 - MPMX19_03773 0.49 -1.0 17,671 - MPMX19_03773 0.49 -0.4 17,875 - MPMX19_03773 0.58 +0.6 17,875 - MPMX19_03773 0.58 -1.2 17,875 - MPMX19_03773 0.58 -0.5 17,875 - MPMX19_03773 0.58 -0.2 17,875 - MPMX19_03773 0.58 +0.0 17,875 - MPMX19_03773 0.58 -0.7 17,875 - MPMX19_03773 0.58 -1.0 17,875 - MPMX19_03773 0.58 -1.9 17,875 - MPMX19_03773 0.58 +0.1 17,875 - MPMX19_03773 0.58 +0.1 17,875 - MPMX19_03773 0.58 -0.8 18,016 - MPMX19_03773 0.65 +0.7 18,016 - MPMX19_03773 0.65 +0.6 18,050 - MPMX19_03773 0.66 -0.9 18,050 - MPMX19_03773 0.66 +1.0 18,229 - MPMX19_03773 0.74 -0.3 18,229 - MPMX19_03773 0.74 -0.8 18,277 - MPMX19_03773 0.77 -0.1 18,277 - MPMX19_03773 0.77 +0.0 18,277 - MPMX19_03773 0.77 -0.2 18,277 - MPMX19_03773 0.77 +1.0 18,367 - MPMX19_03773 0.81 -1.3 18,780 + -0.5 18,781 - -1.4 18,970 + MPMX19_03774 0.24 -0.1 18,970 + MPMX19_03774 0.24 +0.8 18,970 + MPMX19_03774 0.24 -1.8 18,970 + MPMX19_03774 0.24 +0.5 18,970 + MPMX19_03774 0.24 -1.0 18,970 + MPMX19_03774 0.24 -1.0 18,971 - MPMX19_03774 0.24 +0.4 18,971 - MPMX19_03774 0.24 -1.9 18,971 - MPMX19_03774 0.24 -0.4 18,971 - MPMX19_03774 0.24 -1.2 18,971 - MPMX19_03774 0.24 +0.9 18,971 - MPMX19_03774 0.24 +0.1 18,971 - MPMX19_03774 0.24 +0.1 18,971 - MPMX19_03774 0.24 +0.8 18,971 - MPMX19_03774 0.24 -1.0 18,971 - MPMX19_03774 0.24 +0.3 18,971 - MPMX19_03774 0.24 -0.2 19,044 + MPMX19_03774 0.34 -0.8 19,044 + MPMX19_03774 0.34 -1.5 19,044 + MPMX19_03774 0.34 +1.3 19,044 + MPMX19_03774 0.34 +2.0 19,044 + MPMX19_03774 0.34 -1.7 19,044 + MPMX19_03774 0.34 -0.9 19,044 + MPMX19_03774 0.34 -0.5 19,044 + MPMX19_03774 0.34 +1.0 19,044 + MPMX19_03774 0.34 +1.2 19,044 + MPMX19_03774 0.34 +1.0 19,044 + MPMX19_03774 0.34 -2.1 19,044 + MPMX19_03774 0.34 -0.5 19,044 + MPMX19_03774 0.34 +0.4 19,044 + MPMX19_03774 0.34 +0.4 19,044 + MPMX19_03774 0.34 +0.0 19,045 - MPMX19_03774 0.34 -1.7 19,045 - MPMX19_03774 0.34 +0.2 19,045 - MPMX19_03774 0.34 -0.7 19,045 - MPMX19_03774 0.34 -1.3 19,045 - MPMX19_03774 0.34 +0.3 19,045 - MPMX19_03774 0.34 -0.5 19,045 - MPMX19_03774 0.34 -0.5 19,045 - MPMX19_03774 0.34 +1.2 19,045 - MPMX19_03774 0.34 -0.2 19,045 - MPMX19_03774 0.34 -1.0 19,045 - MPMX19_03774 0.34 +0.0 19,045 - MPMX19_03774 0.34 -0.1 19,045 - MPMX19_03774 0.34 -0.3 19,045 - MPMX19_03774 0.34 -0.6 19,045 - MPMX19_03774 0.34 +1.2 19,045 - MPMX19_03774 0.34 +1.0 19,045 - MPMX19_03774 0.34 -0.5 19,048 + MPMX19_03774 0.34 +0.7 19,048 + MPMX19_03774 0.34 +0.6 19,049 - MPMX19_03774 0.34 +1.0 19,049 - MPMX19_03774 0.34 -1.0 19,049 - MPMX19_03774 0.34 +0.1 19,049 - MPMX19_03774 0.34 -0.2 19,049 - MPMX19_03774 0.34 -0.4 19,049 - MPMX19_03774 0.34 -0.8 19,292 - MPMX19_03774 0.66 -1.2 19,292 - MPMX19_03774 0.66 +1.6 19,292 - MPMX19_03774 0.66 -0.8 19,292 - MPMX19_03774 0.66 +0.1 19,292 - MPMX19_03774 0.66 +1.3 19,292 - MPMX19_03774 0.66 -0.3 19,292 - MPMX19_03774 0.66 -1.3 19,572 - +0.6 19,578 - +0.7 19,578 - +1.2 19,679 - MPMX19_03775 0.21 +0.2 19,679 - MPMX19_03775 0.21 -1.9 19,679 - MPMX19_03775 0.21 +1.7 19,679 - MPMX19_03775 0.21 -1.4 19,679 - MPMX19_03775 0.21 +0.0 19,679 - MPMX19_03775 0.21 -0.1 19,679 - MPMX19_03775 0.21 -1.1 19,679 - MPMX19_03775 0.21 +0.4 19,679 - MPMX19_03775 0.21 -1.7 19,679 - MPMX19_03775 0.21 +0.6 19,679 - MPMX19_03775 0.21 -1.4 19,679 - MPMX19_03775 0.21 -0.8 19,679 - MPMX19_03775 0.21 +0.5 19,679 - MPMX19_03775 0.21 -1.0 19,679 - MPMX19_03775 0.21 -0.9 19,679 - MPMX19_03775 0.21 +1.0 19,679 - MPMX19_03775 0.21 -0.4 19,679 - MPMX19_03775 0.21 +0.5 19,741 - MPMX19_03775 0.31 +1.3
Or see this region's nucleotide sequence