Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03766 and MPMX19_03767 are separated by 258 nucleotides MPMX19_03767 and MPMX19_03768 are separated by 45 nucleotides
MPMX19_03766: MPMX19_03766 - Sensor histidine kinase RcsC, at 5,816 to 7,834
_03766
MPMX19_03767: MPMX19_03767 - Sensor histidine kinase RcsC, at 8,093 to 11,275
_03767
MPMX19_03768: MPMX19_03768 - hypothetical protein, at 11,321 to 12,223
_03768
Position (kb)
8
9
10
11
12 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 7.886 kb on - strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.918 kb on + strand at 7.919 kb on - strand at 7.919 kb on - strand at 7.951 kb on - strand at 7.951 kb on - strand at 7.951 kb on - strand at 7.953 kb on + strand at 7.953 kb on + strand at 7.953 kb on + strand at 7.954 kb on - strand at 7.957 kb on - strand at 7.971 kb on + strand at 7.971 kb on + strand at 8.003 kb on + strand at 8.004 kb on - strand at 8.004 kb on - strand at 8.072 kb on + strand at 8.159 kb on + strand at 8.160 kb on - strand at 8.262 kb on - strand at 8.419 kb on + strand, within MPMX19_03767 at 8.420 kb on - strand, within MPMX19_03767 at 9.344 kb on + strand, within MPMX19_03767 at 9.345 kb on - strand, within MPMX19_03767 at 9.345 kb on - strand, within MPMX19_03767 at 9.431 kb on + strand, within MPMX19_03767 at 9.431 kb on + strand, within MPMX19_03767 at 9.431 kb on + strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.432 kb on - strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.923 kb on + strand, within MPMX19_03767 at 9.924 kb on - strand, within MPMX19_03767 at 9.924 kb on - strand, within MPMX19_03767 at 9.924 kb on - strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.049 kb on + strand, within MPMX19_03767 at 10.050 kb on - strand, within MPMX19_03767 at 10.050 kb on - strand, within MPMX19_03767 at 10.050 kb on - strand, within MPMX19_03767 at 10.050 kb on - strand, within MPMX19_03767 at 10.050 kb on - strand, within MPMX19_03767 at 10.050 kb on - strand, within MPMX19_03767 at 10.592 kb on + strand, within MPMX19_03767 at 10.593 kb on - strand, within MPMX19_03767 at 10.593 kb on - strand, within MPMX19_03767 at 10.613 kb on + strand, within MPMX19_03767 at 10.613 kb on + strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 10.614 kb on - strand, within MPMX19_03767 at 11.166 kb on - strand at 11.166 kb on - strand at 11.288 kb on - strand at 11.322 kb on + strand at 11.361 kb on - strand at 11.492 kb on - strand, within MPMX19_03768 at 11.601 kb on - strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.786 kb on + strand, within MPMX19_03768 at 11.810 kb on - strand, within MPMX19_03768 at 11.870 kb on + strand, within MPMX19_03768 at 12.118 kb on + strand, within MPMX19_03768 at 12.176 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 7,886 - -0.3 7,918 + -0.1 7,918 + +0.5 7,918 + -0.8 7,918 + +0.5 7,919 - -0.1 7,919 - +0.6 7,951 - -0.3 7,951 - +0.2 7,951 - -1.2 7,953 + -1.9 7,953 + -2.0 7,953 + -0.4 7,954 - -2.1 7,957 - -0.7 7,971 + -0.8 7,971 + +1.3 8,003 + +1.7 8,004 - -1.4 8,004 - +1.0 8,072 + -0.4 8,159 + +0.3 8,160 - -1.9 8,262 - +0.0 8,419 + MPMX19_03767 0.10 -1.3 8,420 - MPMX19_03767 0.10 +0.0 9,344 + MPMX19_03767 0.39 +1.7 9,345 - MPMX19_03767 0.39 -0.4 9,345 - MPMX19_03767 0.39 +1.0 9,431 + MPMX19_03767 0.42 -0.1 9,431 + MPMX19_03767 0.42 -0.8 9,431 + MPMX19_03767 0.42 -0.6 9,432 - MPMX19_03767 0.42 -0.5 9,432 - MPMX19_03767 0.42 +0.5 9,432 - MPMX19_03767 0.42 -0.1 9,432 - MPMX19_03767 0.42 +0.8 9,432 - MPMX19_03767 0.42 -0.3 9,432 - MPMX19_03767 0.42 -1.5 9,432 - MPMX19_03767 0.42 +0.1 9,432 - MPMX19_03767 0.42 -0.4 9,923 + MPMX19_03767 0.57 -0.1 9,923 + MPMX19_03767 0.57 -0.3 9,923 + MPMX19_03767 0.57 -0.9 9,923 + MPMX19_03767 0.57 -0.9 9,923 + MPMX19_03767 0.57 +0.3 9,923 + MPMX19_03767 0.57 +0.6 9,923 + MPMX19_03767 0.57 -2.4 9,923 + MPMX19_03767 0.57 +0.5 9,923 + MPMX19_03767 0.57 -1.1 9,923 + MPMX19_03767 0.57 -0.5 9,924 - MPMX19_03767 0.58 -0.2 9,924 - MPMX19_03767 0.58 -0.5 9,924 - MPMX19_03767 0.58 +0.6 10,049 + MPMX19_03767 0.61 +0.9 10,049 + MPMX19_03767 0.61 -0.6 10,049 + MPMX19_03767 0.61 -1.1 10,049 + MPMX19_03767 0.61 -1.3 10,049 + MPMX19_03767 0.61 -0.4 10,049 + MPMX19_03767 0.61 -0.8 10,049 + MPMX19_03767 0.61 -3.1 10,049 + MPMX19_03767 0.61 -1.4 10,049 + MPMX19_03767 0.61 -1.1 10,050 - MPMX19_03767 0.61 +0.3 10,050 - MPMX19_03767 0.61 -0.7 10,050 - MPMX19_03767 0.61 -0.2 10,050 - MPMX19_03767 0.61 +1.0 10,050 - MPMX19_03767 0.61 +0.0 10,050 - MPMX19_03767 0.61 -1.1 10,592 + MPMX19_03767 0.79 +0.2 10,593 - MPMX19_03767 0.79 -0.8 10,593 - MPMX19_03767 0.79 +0.8 10,613 + MPMX19_03767 0.79 -0.3 10,613 + MPMX19_03767 0.79 -1.3 10,614 - MPMX19_03767 0.79 -0.6 10,614 - MPMX19_03767 0.79 +0.3 10,614 - MPMX19_03767 0.79 -1.0 11,166 - +2.0 11,166 - +1.3 11,288 - -0.5 11,322 + -0.9 11,361 - -0.2 11,492 - MPMX19_03768 0.19 -1.0 11,601 - MPMX19_03768 0.31 -0.8 11,700 + MPMX19_03768 0.42 +0.2 11,700 + MPMX19_03768 0.42 -1.3 11,786 + MPMX19_03768 0.51 +0.2 11,810 - MPMX19_03768 0.54 -0.5 11,870 + MPMX19_03768 0.61 +0.1 12,118 + MPMX19_03768 0.88 -1.6 12,176 + -2.0
Or see this region's nucleotide sequence