Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03683

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03682 and MPMX19_03683 are separated by 36 nucleotidesMPMX19_03683 and MPMX19_03684 are separated by 3 nucleotidesMPMX19_03684 and MPMX19_03685 are separated by 16 nucleotidesMPMX19_03685 and MPMX19_03686 are separated by 73 nucleotides MPMX19_03682: MPMX19_03682 - hypothetical protein, at 1,121,991 to 1,122,356 _03682 MPMX19_03683: MPMX19_03683 - Fe(2+) transporter FeoB, at 1,122,393 to 1,124,327 _03683 MPMX19_03684: MPMX19_03684 - hypothetical protein, at 1,124,331 to 1,124,540 _03684 MPMX19_03685: MPMX19_03685 - hypothetical protein, at 1,124,557 to 1,125,237 _03685 MPMX19_03686: MPMX19_03686 - Quinoprotein alcohol dehydrogenase (cytochrome c), at 1,125,311 to 1,127,227 _03686 Position (kb) 1122 1123 1124 1125Strain fitness (log2 ratio) -2 -1 0 1 2at 1121.457 kb on + strandat 1121.505 kb on - strandat 1121.513 kb on - strandat 1121.711 kb on + strandat 1121.711 kb on + strandat 1121.712 kb on - strandat 1121.712 kb on - strandat 1121.931 kb on + strandat 1121.931 kb on + strandat 1121.931 kb on + strandat 1121.932 kb on - strandat 1121.932 kb on - strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.409 kb on + strandat 1122.410 kb on - strandat 1122.410 kb on - strandat 1122.410 kb on - strandat 1122.525 kb on + strandat 1122.525 kb on + strandat 1122.525 kb on + strandat 1122.526 kb on - strandat 1122.526 kb on - strandat 1122.526 kb on - strandat 1122.612 kb on + strand, within MPMX19_03683at 1122.612 kb on + strand, within MPMX19_03683at 1122.612 kb on + strand, within MPMX19_03683at 1122.612 kb on + strand, within MPMX19_03683at 1122.612 kb on + strand, within MPMX19_03683at 1122.613 kb on - strand, within MPMX19_03683at 1122.613 kb on - strand, within MPMX19_03683at 1122.613 kb on - strand, within MPMX19_03683at 1122.613 kb on - strand, within MPMX19_03683at 1122.613 kb on - strand, within MPMX19_03683at 1122.794 kb on + strand, within MPMX19_03683at 1122.794 kb on + strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1122.795 kb on - strand, within MPMX19_03683at 1123.032 kb on + strand, within MPMX19_03683at 1123.032 kb on + strand, within MPMX19_03683at 1123.032 kb on + strand, within MPMX19_03683at 1123.033 kb on - strand, within MPMX19_03683at 1123.033 kb on - strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.386 kb on + strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.387 kb on - strand, within MPMX19_03683at 1123.587 kb on + strand, within MPMX19_03683at 1123.587 kb on + strand, within MPMX19_03683at 1123.587 kb on + strand, within MPMX19_03683at 1123.587 kb on + strand, within MPMX19_03683at 1123.588 kb on - strand, within MPMX19_03683at 1123.588 kb on - strand, within MPMX19_03683at 1123.588 kb on - strand, within MPMX19_03683at 1123.588 kb on - strand, within MPMX19_03683at 1123.588 kb on - strand, within MPMX19_03683at 1123.589 kb on + strand, within MPMX19_03683at 1123.589 kb on + strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.590 kb on - strand, within MPMX19_03683at 1123.674 kb on + strand, within MPMX19_03683at 1123.674 kb on + strand, within MPMX19_03683at 1123.674 kb on + strand, within MPMX19_03683at 1123.675 kb on - strand, within MPMX19_03683at 1123.675 kb on - strand, within MPMX19_03683at 1123.675 kb on - strand, within MPMX19_03683at 1123.675 kb on - strand, within MPMX19_03683at 1123.675 kb on - strand, within MPMX19_03683at 1123.773 kb on + strand, within MPMX19_03683at 1123.935 kb on + strand, within MPMX19_03683at 1123.935 kb on + strand, within MPMX19_03683at 1123.935 kb on + strand, within MPMX19_03683at 1123.935 kb on + strand, within MPMX19_03683at 1123.935 kb on + strand, within MPMX19_03683at 1123.935 kb on + strand, within MPMX19_03683at 1123.936 kb on - strand, within MPMX19_03683at 1123.936 kb on - strand, within MPMX19_03683at 1123.936 kb on - strand, within MPMX19_03683at 1124.070 kb on + strand, within MPMX19_03683at 1124.070 kb on + strand, within MPMX19_03683at 1124.070 kb on + strand, within MPMX19_03683at 1124.070 kb on + strand, within MPMX19_03683at 1124.070 kb on + strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.071 kb on - strand, within MPMX19_03683at 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.256 kb on + strandat 1124.257 kb on - strandat 1124.257 kb on - strandat 1124.257 kb on - strandat 1124.257 kb on - strandat 1124.274 kb on + strandat 1124.275 kb on - strandat 1124.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,121,457 + -0.9
1,121,505 - +0.9
1,121,513 - -0.1
1,121,711 + -1.8
1,121,711 + -0.6
1,121,712 - -0.6
1,121,712 - +0.1
1,121,931 + +0.4
1,121,931 + -1.2
1,121,931 + -0.5
1,121,932 - -1.0
1,121,932 - +0.6
1,122,409 + +0.2
1,122,409 + +0.6
1,122,409 + -2.2
1,122,409 + -0.8
1,122,409 + -0.6
1,122,409 + +0.1
1,122,409 + -1.4
1,122,409 + +0.8
1,122,409 + -0.1
1,122,410 - +0.8
1,122,410 - +0.9
1,122,410 - -1.8
1,122,525 + -0.5
1,122,525 + -0.3
1,122,525 + +1.9
1,122,526 - -1.3
1,122,526 - +0.9
1,122,526 - -0.5
1,122,612 + MPMX19_03683 0.11 +1.1
1,122,612 + MPMX19_03683 0.11 +0.5
1,122,612 + MPMX19_03683 0.11 -0.6
1,122,612 + MPMX19_03683 0.11 -0.5
1,122,612 + MPMX19_03683 0.11 +1.1
1,122,613 - MPMX19_03683 0.11 +0.5
1,122,613 - MPMX19_03683 0.11 +0.1
1,122,613 - MPMX19_03683 0.11 +0.8
1,122,613 - MPMX19_03683 0.11 -0.8
1,122,613 - MPMX19_03683 0.11 +1.5
1,122,794 + MPMX19_03683 0.21 +0.6
1,122,794 + MPMX19_03683 0.21 +0.3
1,122,795 - MPMX19_03683 0.21 -0.5
1,122,795 - MPMX19_03683 0.21 -0.1
1,122,795 - MPMX19_03683 0.21 -1.3
1,122,795 - MPMX19_03683 0.21 +0.1
1,122,795 - MPMX19_03683 0.21 -1.4
1,122,795 - MPMX19_03683 0.21 +0.1
1,122,795 - MPMX19_03683 0.21 -0.1
1,122,795 - MPMX19_03683 0.21 +1.2
1,122,795 - MPMX19_03683 0.21 -0.9
1,122,795 - MPMX19_03683 0.21 +0.7
1,122,795 - MPMX19_03683 0.21 +0.4
1,123,032 + MPMX19_03683 0.33 -1.2
1,123,032 + MPMX19_03683 0.33 +0.4
1,123,032 + MPMX19_03683 0.33 +1.2
1,123,033 - MPMX19_03683 0.33 +0.1
1,123,033 - MPMX19_03683 0.33 +0.8
1,123,386 + MPMX19_03683 0.51 +0.5
1,123,386 + MPMX19_03683 0.51 -0.4
1,123,386 + MPMX19_03683 0.51 -0.1
1,123,386 + MPMX19_03683 0.51 -0.6
1,123,386 + MPMX19_03683 0.51 -1.0
1,123,386 + MPMX19_03683 0.51 -1.4
1,123,386 + MPMX19_03683 0.51 +0.1
1,123,386 + MPMX19_03683 0.51 +0.5
1,123,386 + MPMX19_03683 0.51 -0.1
1,123,386 + MPMX19_03683 0.51 +1.9
1,123,387 - MPMX19_03683 0.51 +0.4
1,123,387 - MPMX19_03683 0.51 +0.2
1,123,387 - MPMX19_03683 0.51 -0.2
1,123,387 - MPMX19_03683 0.51 -0.1
1,123,387 - MPMX19_03683 0.51 -0.0
1,123,387 - MPMX19_03683 0.51 +0.1
1,123,387 - MPMX19_03683 0.51 +0.9
1,123,387 - MPMX19_03683 0.51 +0.9
1,123,387 - MPMX19_03683 0.51 +0.5
1,123,387 - MPMX19_03683 0.51 -0.4
1,123,387 - MPMX19_03683 0.51 +1.2
1,123,587 + MPMX19_03683 0.62 +0.5
1,123,587 + MPMX19_03683 0.62 -0.9
1,123,587 + MPMX19_03683 0.62 +0.5
1,123,587 + MPMX19_03683 0.62 -2.1
1,123,588 - MPMX19_03683 0.62 +0.9
1,123,588 - MPMX19_03683 0.62 -0.6
1,123,588 - MPMX19_03683 0.62 -0.2
1,123,588 - MPMX19_03683 0.62 -1.0
1,123,588 - MPMX19_03683 0.62 -0.6
1,123,589 + MPMX19_03683 0.62 -1.5
1,123,589 + MPMX19_03683 0.62 -1.2
1,123,590 - MPMX19_03683 0.62 +0.4
1,123,590 - MPMX19_03683 0.62 +0.4
1,123,590 - MPMX19_03683 0.62 +0.4
1,123,590 - MPMX19_03683 0.62 +0.6
1,123,590 - MPMX19_03683 0.62 -0.7
1,123,590 - MPMX19_03683 0.62 -0.6
1,123,590 - MPMX19_03683 0.62 +0.9
1,123,590 - MPMX19_03683 0.62 +0.2
1,123,590 - MPMX19_03683 0.62 +0.4
1,123,590 - MPMX19_03683 0.62 -0.1
1,123,674 + MPMX19_03683 0.66 -0.4
1,123,674 + MPMX19_03683 0.66 -1.0
1,123,674 + MPMX19_03683 0.66 -2.1
1,123,675 - MPMX19_03683 0.66 +0.5
1,123,675 - MPMX19_03683 0.66 -0.3
1,123,675 - MPMX19_03683 0.66 +0.1
1,123,675 - MPMX19_03683 0.66 -0.9
1,123,675 - MPMX19_03683 0.66 -0.2
1,123,773 + MPMX19_03683 0.71 -0.9
1,123,935 + MPMX19_03683 0.80 +0.6
1,123,935 + MPMX19_03683 0.80 +2.2
1,123,935 + MPMX19_03683 0.80 -0.6
1,123,935 + MPMX19_03683 0.80 +0.4
1,123,935 + MPMX19_03683 0.80 -0.1
1,123,935 + MPMX19_03683 0.80 -0.5
1,123,936 - MPMX19_03683 0.80 +0.8
1,123,936 - MPMX19_03683 0.80 +1.4
1,123,936 - MPMX19_03683 0.80 +0.1
1,124,070 + MPMX19_03683 0.87 +0.1
1,124,070 + MPMX19_03683 0.87 -0.2
1,124,070 + MPMX19_03683 0.87 -0.2
1,124,070 + MPMX19_03683 0.87 -0.5
1,124,070 + MPMX19_03683 0.87 +0.7
1,124,071 - MPMX19_03683 0.87 -0.8
1,124,071 - MPMX19_03683 0.87 +1.2
1,124,071 - MPMX19_03683 0.87 +0.4
1,124,071 - MPMX19_03683 0.87 +0.6
1,124,071 - MPMX19_03683 0.87 -0.4
1,124,071 - MPMX19_03683 0.87 +1.2
1,124,071 - MPMX19_03683 0.87 -0.1
1,124,071 - MPMX19_03683 0.87 +0.3
1,124,071 - MPMX19_03683 0.87 -0.1
1,124,256 + -0.9
1,124,256 + +1.5
1,124,256 + -1.2
1,124,256 + -1.1
1,124,256 + -0.6
1,124,256 + -1.5
1,124,256 + +0.0
1,124,256 + -0.9
1,124,257 - -0.1
1,124,257 - +0.7
1,124,257 - -0.6
1,124,257 - -0.6
1,124,274 + +1.5
1,124,275 - -1.1
1,124,275 - -0.0

Or see this region's nucleotide sequence