Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03619 and MPMX19_03620 are separated by 378 nucleotides MPMX19_03620 and MPMX19_03621 overlap by 23 nucleotides
MPMX19_03619: MPMX19_03619 - hypothetical protein, at 1,050,961 to 1,052,385
_03619
MPMX19_03620: MPMX19_03620 - hypothetical protein, at 1,052,764 to 1,054,866
_03620
MPMX19_03621: MPMX19_03621 - N-acetylglucosamine repressor, at 1,054,844 to 1,056,073
_03621
Position (kb)
1052
1053
1054
1055 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1052.072 kb on - strand, within MPMX19_03619 at 1052.083 kb on + strand, within MPMX19_03619 at 1052.084 kb on - strand, within MPMX19_03619 at 1052.084 kb on - strand, within MPMX19_03619 at 1052.084 kb on - strand, within MPMX19_03619 at 1052.084 kb on - strand, within MPMX19_03619 at 1052.096 kb on - strand, within MPMX19_03619 at 1052.413 kb on + strand at 1052.414 kb on - strand at 1052.433 kb on - strand at 1052.437 kb on - strand at 1052.437 kb on - strand at 1052.441 kb on - strand at 1052.445 kb on + strand at 1052.638 kb on + strand at 1053.244 kb on + strand, within MPMX19_03620 at 1053.245 kb on - strand, within MPMX19_03620 at 1053.245 kb on - strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.664 kb on + strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1053.665 kb on - strand, within MPMX19_03620 at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.959 kb on + strand at 1054.960 kb on - strand at 1054.960 kb on - strand at 1054.960 kb on - strand at 1054.960 kb on - strand at 1054.960 kb on - strand at 1055.005 kb on - strand, within MPMX19_03621 at 1055.120 kb on - strand, within MPMX19_03621 at 1055.356 kb on + strand, within MPMX19_03621 at 1055.356 kb on + strand, within MPMX19_03621 at 1055.356 kb on + strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.357 kb on - strand, within MPMX19_03621 at 1055.394 kb on + strand, within MPMX19_03621 at 1055.395 kb on - strand, within MPMX19_03621 at 1055.538 kb on + strand, within MPMX19_03621 at 1055.538 kb on + strand, within MPMX19_03621 at 1055.538 kb on + strand, within MPMX19_03621 at 1055.538 kb on + strand, within MPMX19_03621 at 1055.538 kb on + strand, within MPMX19_03621 at 1055.538 kb on + strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.539 kb on - strand, within MPMX19_03621 at 1055.565 kb on + strand, within MPMX19_03621
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,052,072 - MPMX19_03619 0.78 -0.4 1,052,083 + MPMX19_03619 0.79 +0.5 1,052,084 - MPMX19_03619 0.79 -0.2 1,052,084 - MPMX19_03619 0.79 -0.2 1,052,084 - MPMX19_03619 0.79 +1.1 1,052,084 - MPMX19_03619 0.79 -0.8 1,052,096 - MPMX19_03619 0.80 +0.4 1,052,413 + -0.6 1,052,414 - -1.8 1,052,433 - -1.0 1,052,437 - -0.5 1,052,437 - -0.1 1,052,441 - -0.6 1,052,445 + -1.6 1,052,638 + -0.5 1,053,244 + MPMX19_03620 0.23 +0.1 1,053,245 - MPMX19_03620 0.23 -1.6 1,053,245 - MPMX19_03620 0.23 -1.2 1,053,664 + MPMX19_03620 0.43 +0.2 1,053,664 + MPMX19_03620 0.43 +0.0 1,053,664 + MPMX19_03620 0.43 -0.8 1,053,664 + MPMX19_03620 0.43 +0.6 1,053,664 + MPMX19_03620 0.43 -1.2 1,053,664 + MPMX19_03620 0.43 -0.6 1,053,664 + MPMX19_03620 0.43 -0.1 1,053,665 - MPMX19_03620 0.43 -0.1 1,053,665 - MPMX19_03620 0.43 -0.4 1,053,665 - MPMX19_03620 0.43 -0.1 1,053,665 - MPMX19_03620 0.43 -1.5 1,053,665 - MPMX19_03620 0.43 -0.9 1,053,665 - MPMX19_03620 0.43 -0.1 1,053,665 - MPMX19_03620 0.43 +1.2 1,054,959 + -1.4 1,054,959 + +0.0 1,054,959 + -1.9 1,054,959 + -1.6 1,054,959 + -0.6 1,054,959 + +0.9 1,054,959 + -1.3 1,054,959 + -0.5 1,054,959 + +0.8 1,054,959 + +0.0 1,054,960 - -1.7 1,054,960 - +1.1 1,054,960 - -0.6 1,054,960 - +0.7 1,054,960 - +0.1 1,055,005 - MPMX19_03621 0.13 -0.9 1,055,120 - MPMX19_03621 0.22 +0.2 1,055,356 + MPMX19_03621 0.42 -1.2 1,055,356 + MPMX19_03621 0.42 -1.9 1,055,356 + MPMX19_03621 0.42 +0.1 1,055,357 - MPMX19_03621 0.42 -0.2 1,055,357 - MPMX19_03621 0.42 +0.7 1,055,357 - MPMX19_03621 0.42 -1.1 1,055,357 - MPMX19_03621 0.42 +0.5 1,055,357 - MPMX19_03621 0.42 -0.6 1,055,357 - MPMX19_03621 0.42 +0.1 1,055,357 - MPMX19_03621 0.42 +0.8 1,055,357 - MPMX19_03621 0.42 -1.1 1,055,357 - MPMX19_03621 0.42 +0.4 1,055,357 - MPMX19_03621 0.42 +1.2 1,055,394 + MPMX19_03621 0.45 -1.6 1,055,395 - MPMX19_03621 0.45 +0.2 1,055,538 + MPMX19_03621 0.56 -1.1 1,055,538 + MPMX19_03621 0.56 +0.1 1,055,538 + MPMX19_03621 0.56 -0.1 1,055,538 + MPMX19_03621 0.56 -1.5 1,055,538 + MPMX19_03621 0.56 +1.0 1,055,538 + MPMX19_03621 0.56 +2.5 1,055,539 - MPMX19_03621 0.57 -0.8 1,055,539 - MPMX19_03621 0.57 +1.2 1,055,539 - MPMX19_03621 0.57 +0.5 1,055,539 - MPMX19_03621 0.57 -0.1 1,055,539 - MPMX19_03621 0.57 -1.1 1,055,539 - MPMX19_03621 0.57 +0.9 1,055,539 - MPMX19_03621 0.57 -1.4 1,055,565 + MPMX19_03621 0.59 +0.4
Or see this region's nucleotide sequence