Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03568 and MPMX19_03569 are separated by 63 nucleotides MPMX19_03569 and MPMX19_03570 are separated by 182 nucleotides MPMX19_03570 and MPMX19_03571 are separated by 34 nucleotides MPMX19_03571 and MPMX19_03572 are separated by 22 nucleotides
MPMX19_03568: MPMX19_03568 - 2-methyl-1,2-propanediol dehydrogenase, at 988,979 to 990,550
_03568
MPMX19_03569: MPMX19_03569 - hypothetical protein, at 990,614 to 991,249
_03569
MPMX19_03570: MPMX19_03570 - Phenoxybenzoate dioxygenase subunit beta, at 991,432 to 992,412
_03570
MPMX19_03571: MPMX19_03571 - hypothetical protein, at 992,447 to 992,872
_03571
MPMX19_03572: MPMX19_03572 - Long-chain-fatty-acid--CoA ligase, at 992,895 to 994,412
_03572
Position (kb)
991
992
993 Strain fitness (log2 ratio)
-2
-1
0
1 at 990.515 kb on + strand at 990.515 kb on + strand at 990.515 kb on + strand at 990.515 kb on + strand at 990.515 kb on + strand at 990.516 kb on - strand at 990.516 kb on - strand at 990.643 kb on + strand at 990.732 kb on + strand, within MPMX19_03569 at 990.732 kb on + strand, within MPMX19_03569 at 990.732 kb on + strand, within MPMX19_03569 at 990.732 kb on + strand, within MPMX19_03569 at 990.733 kb on - strand, within MPMX19_03569 at 990.750 kb on + strand, within MPMX19_03569 at 990.750 kb on + strand, within MPMX19_03569 at 990.751 kb on - strand, within MPMX19_03569 at 990.795 kb on + strand, within MPMX19_03569 at 990.795 kb on + strand, within MPMX19_03569 at 990.795 kb on + strand, within MPMX19_03569 at 990.795 kb on + strand, within MPMX19_03569 at 990.795 kb on + strand, within MPMX19_03569 at 990.796 kb on - strand, within MPMX19_03569 at 990.796 kb on - strand, within MPMX19_03569 at 990.796 kb on - strand, within MPMX19_03569 at 991.440 kb on + strand at 991.440 kb on + strand at 991.440 kb on + strand at 991.441 kb on - strand at 991.624 kb on + strand, within MPMX19_03570 at 991.624 kb on + strand, within MPMX19_03570 at 991.624 kb on + strand, within MPMX19_03570 at 991.789 kb on + strand, within MPMX19_03570 at 991.789 kb on + strand, within MPMX19_03570 at 991.789 kb on + strand, within MPMX19_03570 at 991.789 kb on + strand, within MPMX19_03570 at 991.789 kb on + strand, within MPMX19_03570 at 991.790 kb on - strand, within MPMX19_03570 at 991.790 kb on - strand, within MPMX19_03570 at 991.790 kb on - strand, within MPMX19_03570 at 991.879 kb on + strand, within MPMX19_03570 at 991.879 kb on + strand, within MPMX19_03570 at 991.880 kb on - strand, within MPMX19_03570 at 991.880 kb on - strand, within MPMX19_03570 at 991.880 kb on - strand, within MPMX19_03570 at 991.880 kb on - strand, within MPMX19_03570 at 992.026 kb on + strand, within MPMX19_03570 at 992.026 kb on + strand, within MPMX19_03570 at 992.026 kb on + strand, within MPMX19_03570 at 992.026 kb on + strand, within MPMX19_03570 at 992.026 kb on + strand, within MPMX19_03570 at 992.026 kb on + strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.027 kb on - strand, within MPMX19_03570 at 992.224 kb on + strand, within MPMX19_03570 at 992.225 kb on - strand, within MPMX19_03570 at 992.651 kb on + strand, within MPMX19_03571 at 992.651 kb on + strand, within MPMX19_03571 at 992.651 kb on + strand, within MPMX19_03571 at 992.651 kb on + strand, within MPMX19_03571 at 992.651 kb on + strand, within MPMX19_03571 at 992.651 kb on + strand, within MPMX19_03571 at 992.651 kb on + strand, within MPMX19_03571 at 992.652 kb on - strand, within MPMX19_03571 at 992.685 kb on - strand, within MPMX19_03571 at 992.873 kb on + strand at 992.873 kb on + strand at 992.873 kb on + strand at 992.873 kb on + strand at 992.874 kb on - strand at 992.874 kb on - strand at 992.874 kb on - strand at 992.874 kb on - strand at 992.874 kb on - strand at 992.874 kb on - strand at 992.874 kb on - strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.944 kb on + strand at 992.945 kb on - strand at 992.945 kb on - strand at 992.945 kb on - strand at 992.945 kb on - strand at 992.945 kb on - strand at 992.945 kb on - strand at 992.977 kb on + strand at 992.977 kb on + strand at 992.977 kb on + strand at 992.978 kb on - strand at 993.172 kb on + strand, within MPMX19_03572 at 993.172 kb on + strand, within MPMX19_03572 at 993.172 kb on + strand, within MPMX19_03572 at 993.172 kb on + strand, within MPMX19_03572 at 993.173 kb on - strand, within MPMX19_03572 at 993.173 kb on - strand, within MPMX19_03572 at 993.173 kb on - strand, within MPMX19_03572 at 993.229 kb on + strand, within MPMX19_03572 at 993.229 kb on + strand, within MPMX19_03572 at 993.229 kb on + strand, within MPMX19_03572 at 993.229 kb on + strand, within MPMX19_03572
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 990,515 + -1.5 990,515 + -0.1 990,515 + -0.7 990,515 + +0.6 990,515 + -1.3 990,516 - +0.3 990,516 - -0.5 990,643 + -0.9 990,732 + MPMX19_03569 0.19 -2.1 990,732 + MPMX19_03569 0.19 +0.7 990,732 + MPMX19_03569 0.19 -1.1 990,732 + MPMX19_03569 0.19 -0.4 990,733 - MPMX19_03569 0.19 +0.5 990,750 + MPMX19_03569 0.21 -0.9 990,750 + MPMX19_03569 0.21 -1.1 990,751 - MPMX19_03569 0.22 +1.6 990,795 + MPMX19_03569 0.28 +1.2 990,795 + MPMX19_03569 0.28 -1.7 990,795 + MPMX19_03569 0.28 -0.6 990,795 + MPMX19_03569 0.28 -0.7 990,795 + MPMX19_03569 0.28 +0.1 990,796 - MPMX19_03569 0.29 +1.7 990,796 - MPMX19_03569 0.29 -1.3 990,796 - MPMX19_03569 0.29 -0.2 991,440 + -1.2 991,440 + -0.7 991,440 + +0.6 991,441 - +0.9 991,624 + MPMX19_03570 0.20 -0.4 991,624 + MPMX19_03570 0.20 +0.1 991,624 + MPMX19_03570 0.20 -1.1 991,789 + MPMX19_03570 0.36 -0.7 991,789 + MPMX19_03570 0.36 -0.2 991,789 + MPMX19_03570 0.36 -0.5 991,789 + MPMX19_03570 0.36 +1.2 991,789 + MPMX19_03570 0.36 +0.5 991,790 - MPMX19_03570 0.36 -0.4 991,790 - MPMX19_03570 0.36 -1.9 991,790 - MPMX19_03570 0.36 -0.9 991,879 + MPMX19_03570 0.46 -1.4 991,879 + MPMX19_03570 0.46 -2.3 991,880 - MPMX19_03570 0.46 -0.6 991,880 - MPMX19_03570 0.46 -1.6 991,880 - MPMX19_03570 0.46 -1.0 991,880 - MPMX19_03570 0.46 -1.1 992,026 + MPMX19_03570 0.61 +1.1 992,026 + MPMX19_03570 0.61 -0.7 992,026 + MPMX19_03570 0.61 -0.2 992,026 + MPMX19_03570 0.61 -0.1 992,026 + MPMX19_03570 0.61 -0.2 992,026 + MPMX19_03570 0.61 +0.4 992,027 - MPMX19_03570 0.61 +0.3 992,027 - MPMX19_03570 0.61 -1.3 992,027 - MPMX19_03570 0.61 -0.8 992,027 - MPMX19_03570 0.61 -0.9 992,027 - MPMX19_03570 0.61 -2.6 992,027 - MPMX19_03570 0.61 +0.1 992,027 - MPMX19_03570 0.61 -2.0 992,224 + MPMX19_03570 0.81 -1.1 992,225 - MPMX19_03570 0.81 +0.1 992,651 + MPMX19_03571 0.48 +0.9 992,651 + MPMX19_03571 0.48 -0.7 992,651 + MPMX19_03571 0.48 +0.1 992,651 + MPMX19_03571 0.48 -2.7 992,651 + MPMX19_03571 0.48 -2.6 992,651 + MPMX19_03571 0.48 +0.6 992,651 + MPMX19_03571 0.48 +0.1 992,652 - MPMX19_03571 0.48 -1.3 992,685 - MPMX19_03571 0.56 -1.1 992,873 + -0.5 992,873 + +0.3 992,873 + -0.9 992,873 + +0.3 992,874 - +0.0 992,874 - -1.3 992,874 - -1.7 992,874 - +0.2 992,874 - +0.3 992,874 - +0.9 992,874 - -0.9 992,944 + -0.4 992,944 + -0.6 992,944 + -0.2 992,944 + -0.7 992,944 + +0.5 992,944 + +0.9 992,944 + -0.1 992,944 + +0.6 992,944 + -1.5 992,944 + -1.3 992,944 + +0.3 992,944 + +0.8 992,945 - -0.8 992,945 - -0.5 992,945 - -0.2 992,945 - +1.3 992,945 - +1.3 992,945 - -0.5 992,977 + -0.3 992,977 + -0.4 992,977 + -1.5 992,978 - -0.7 993,172 + MPMX19_03572 0.18 +0.6 993,172 + MPMX19_03572 0.18 -0.1 993,172 + MPMX19_03572 0.18 +0.1 993,172 + MPMX19_03572 0.18 -0.7 993,173 - MPMX19_03572 0.18 +0.3 993,173 - MPMX19_03572 0.18 -0.3 993,173 - MPMX19_03572 0.18 -0.7 993,229 + MPMX19_03572 0.22 -2.2 993,229 + MPMX19_03572 0.22 -1.3 993,229 + MPMX19_03572 0.22 -0.7 993,229 + MPMX19_03572 0.22 -0.7
Or see this region's nucleotide sequence