Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03557 and MPMX19_03558 are separated by 27 nucleotides MPMX19_03558 and MPMX19_03559 are separated by 63 nucleotides
MPMX19_03557: MPMX19_03557 - HTH-type transcriptional regulator CynR, at 977,098 to 977,988
_03557
MPMX19_03558: MPMX19_03558 - hypothetical protein, at 978,016 to 978,396
_03558
MPMX19_03559: MPMX19_03559 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 978,460 to 980,553
_03559
Position (kb) 978
979 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 977.032 kb on + strand at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.987 kb on - strand at 978.152 kb on + strand, within MPMX19_03558 at 978.153 kb on - strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.424 kb on + strand at 978.425 kb on - strand at 978.512 kb on + strand at 978.839 kb on + strand, within MPMX19_03559 at 978.839 kb on + strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.998 kb on + strand, within MPMX19_03559 at 979.106 kb on + strand, within MPMX19_03559 at 979.106 kb on + strand, within MPMX19_03559 at 979.107 kb on - strand, within MPMX19_03559 at 979.107 kb on - strand, within MPMX19_03559 at 979.139 kb on + strand, within MPMX19_03559 at 979.139 kb on + strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.140 kb on - strand, within MPMX19_03559 at 979.259 kb on + strand, within MPMX19_03559 at 979.259 kb on + strand, within MPMX19_03559 at 979.259 kb on + strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559 at 979.260 kb on - strand, within MPMX19_03559
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 977,032 + -1.9 977,413 + MPMX19_03557 0.35 -0.8 977,413 + MPMX19_03557 0.35 +0.7 977,413 + MPMX19_03557 0.35 +0.5 977,413 + MPMX19_03557 0.35 -0.3 977,413 + MPMX19_03557 0.35 -0.7 977,413 + MPMX19_03557 0.35 -1.5 977,413 + MPMX19_03557 0.35 +3.5 977,413 + MPMX19_03557 0.35 -0.4 977,414 - MPMX19_03557 0.35 -2.0 977,414 - MPMX19_03557 0.35 -0.2 977,414 - MPMX19_03557 0.35 +0.3 977,414 - MPMX19_03557 0.35 +1.9 977,414 - MPMX19_03557 0.35 -0.5 977,758 + MPMX19_03557 0.74 -1.5 977,758 + MPMX19_03557 0.74 -0.9 977,987 - -1.2 978,152 + MPMX19_03558 0.36 +0.4 978,153 - MPMX19_03558 0.36 +1.2 978,224 + MPMX19_03558 0.55 +0.1 978,224 + MPMX19_03558 0.55 -1.3 978,224 + MPMX19_03558 0.55 -0.9 978,224 + MPMX19_03558 0.55 -0.1 978,225 - MPMX19_03558 0.55 +0.5 978,225 - MPMX19_03558 0.55 -0.7 978,225 - MPMX19_03558 0.55 +0.8 978,359 + +0.3 978,359 + -1.4 978,359 + -0.2 978,359 + -1.2 978,360 - -0.8 978,360 - +0.9 978,360 - -0.8 978,424 + +0.5 978,425 - -0.4 978,512 + -1.2 978,839 + MPMX19_03559 0.18 -0.4 978,839 + MPMX19_03559 0.18 -1.7 978,840 - MPMX19_03559 0.18 -1.2 978,840 - MPMX19_03559 0.18 +0.2 978,840 - MPMX19_03559 0.18 -0.1 978,998 + MPMX19_03559 0.26 -0.2 979,106 + MPMX19_03559 0.31 -1.2 979,106 + MPMX19_03559 0.31 -0.1 979,107 - MPMX19_03559 0.31 -0.1 979,107 - MPMX19_03559 0.31 +0.0 979,139 + MPMX19_03559 0.32 -0.9 979,139 + MPMX19_03559 0.32 -0.6 979,140 - MPMX19_03559 0.32 -0.4 979,140 - MPMX19_03559 0.32 -0.1 979,140 - MPMX19_03559 0.32 -0.2 979,140 - MPMX19_03559 0.32 +0.5 979,259 + MPMX19_03559 0.38 -0.1 979,259 + MPMX19_03559 0.38 +0.9 979,259 + MPMX19_03559 0.38 -0.8 979,260 - MPMX19_03559 0.38 -0.8 979,260 - MPMX19_03559 0.38 -0.7 979,260 - MPMX19_03559 0.38 +0.3 979,260 - MPMX19_03559 0.38 -0.4
Or see this region's nucleotide sequence