Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03555

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03553 and MPMX19_03554 are separated by 43 nucleotidesMPMX19_03554 and MPMX19_03555 are separated by 73 nucleotidesMPMX19_03555 and MPMX19_03556 are separated by 29 nucleotides MPMX19_03553: MPMX19_03553 - hypothetical protein, at 973,287 to 973,646 _03553 MPMX19_03554: MPMX19_03554 - hypothetical protein, at 973,690 to 974,352 _03554 MPMX19_03555: MPMX19_03555 - Aerobic C4-dicarboxylate transport protein, at 974,426 to 975,805 _03555 MPMX19_03556: MPMX19_03556 - Putative isomerase YbhH, at 975,835 to 976,935 _03556 Position (kb) 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.530 kb on + strand, within MPMX19_03553at 973.531 kb on - strand, within MPMX19_03553at 973.531 kb on - strand, within MPMX19_03553at 973.533 kb on + strand, within MPMX19_03553at 973.533 kb on + strand, within MPMX19_03553at 973.533 kb on + strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.534 kb on - strand, within MPMX19_03553at 973.684 kb on + strandat 973.685 kb on - strandat 973.685 kb on - strandat 973.685 kb on - strandat 973.685 kb on - strandat 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.792 kb on + strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.793 kb on - strand, within MPMX19_03554at 973.834 kb on + strand, within MPMX19_03554at 973.834 kb on + strand, within MPMX19_03554at 973.835 kb on - strand, within MPMX19_03554at 973.893 kb on + strand, within MPMX19_03554at 973.894 kb on - strand, within MPMX19_03554at 973.894 kb on - strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.136 kb on + strand, within MPMX19_03554at 974.137 kb on - strand, within MPMX19_03554at 974.137 kb on - strand, within MPMX19_03554at 974.137 kb on - strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.221 kb on + strand, within MPMX19_03554at 974.222 kb on - strand, within MPMX19_03554at 974.222 kb on - strand, within MPMX19_03554at 974.844 kb on + strand, within MPMX19_03555at 974.844 kb on + strand, within MPMX19_03555at 974.844 kb on + strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.845 kb on - strand, within MPMX19_03555at 974.874 kb on + strand, within MPMX19_03555at 974.874 kb on + strand, within MPMX19_03555at 974.874 kb on + strand, within MPMX19_03555at 974.875 kb on - strand, within MPMX19_03555at 975.003 kb on + strand, within MPMX19_03555at 975.004 kb on - strand, within MPMX19_03555at 975.004 kb on - strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.087 kb on + strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.088 kb on - strand, within MPMX19_03555at 975.135 kb on + strand, within MPMX19_03555at 975.135 kb on + strand, within MPMX19_03555at 975.135 kb on + strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.136 kb on - strand, within MPMX19_03555at 975.523 kb on - strand, within MPMX19_03555at 975.523 kb on - strand, within MPMX19_03555at 975.523 kb on - strand, within MPMX19_03555at 975.523 kb on - strand, within MPMX19_03555at 975.523 kb on - strand, within MPMX19_03555at 975.738 kb on + strandat 975.738 kb on + strandat 975.738 kb on + strandat 975.739 kb on - strandat 975.739 kb on - strandat 975.739 kb on - strandat 975.750 kb on + strandat 975.750 kb on + strandat 975.750 kb on + strandat 975.751 kb on - strandat 975.751 kb on - strandat 975.751 kb on - strandat 975.751 kb on - strandat 975.805 kb on + strandat 975.805 kb on + strandat 975.805 kb on + strandat 975.805 kb on + strandat 975.806 kb on - strandat 975.806 kb on - strandat 975.806 kb on - strandat 975.806 kb on - strandat 975.806 kb on - strandat 975.806 kb on - strandat 975.806 kb on - strandat 976.115 kb on + strand, within MPMX19_03556at 976.115 kb on + strand, within MPMX19_03556at 976.283 kb on + strand, within MPMX19_03556at 976.283 kb on + strand, within MPMX19_03556at 976.487 kb on + strand, within MPMX19_03556at 976.487 kb on + strand, within MPMX19_03556at 976.487 kb on + strand, within MPMX19_03556at 976.487 kb on + strand, within MPMX19_03556at 976.488 kb on - strand, within MPMX19_03556at 976.488 kb on - strand, within MPMX19_03556at 976.488 kb on - strand, within MPMX19_03556at 976.488 kb on - strand, within MPMX19_03556at 976.488 kb on - strand, within MPMX19_03556at 976.488 kb on - strand, within MPMX19_03556at 976.691 kb on + strand, within MPMX19_03556at 976.691 kb on + strand, within MPMX19_03556at 976.692 kb on - strand, within MPMX19_03556at 976.692 kb on - strand, within MPMX19_03556at 976.692 kb on - strand, within MPMX19_03556at 976.692 kb on - strand, within MPMX19_03556at 976.692 kb on - strand, within MPMX19_03556

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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973,530 + MPMX19_03553 0.68 +0.0
973,530 + MPMX19_03553 0.68 -1.0
973,530 + MPMX19_03553 0.68 +0.5
973,530 + MPMX19_03553 0.68 -0.1
973,530 + MPMX19_03553 0.68 +0.5
973,530 + MPMX19_03553 0.68 -0.7
973,531 - MPMX19_03553 0.68 +0.1
973,531 - MPMX19_03553 0.68 -0.4
973,533 + MPMX19_03553 0.68 -1.1
973,533 + MPMX19_03553 0.68 +0.3
973,533 + MPMX19_03553 0.68 +0.8
973,534 - MPMX19_03553 0.69 -0.9
973,534 - MPMX19_03553 0.69 -0.7
973,534 - MPMX19_03553 0.69 -0.6
973,534 - MPMX19_03553 0.69 +0.3
973,534 - MPMX19_03553 0.69 +2.7
973,684 + -1.7
973,685 - -0.2
973,685 - -0.4
973,685 - -1.1
973,685 - -0.4
973,792 + MPMX19_03554 0.15 +0.2
973,792 + MPMX19_03554 0.15 +0.9
973,792 + MPMX19_03554 0.15 -0.3
973,792 + MPMX19_03554 0.15 -0.1
973,792 + MPMX19_03554 0.15 -0.9
973,792 + MPMX19_03554 0.15 +0.2
973,792 + MPMX19_03554 0.15 -0.3
973,793 - MPMX19_03554 0.16 +2.5
973,793 - MPMX19_03554 0.16 -0.2
973,793 - MPMX19_03554 0.16 -1.3
973,793 - MPMX19_03554 0.16 -0.9
973,793 - MPMX19_03554 0.16 -0.2
973,793 - MPMX19_03554 0.16 -0.3
973,793 - MPMX19_03554 0.16 +0.1
973,793 - MPMX19_03554 0.16 -1.9
973,793 - MPMX19_03554 0.16 -0.9
973,793 - MPMX19_03554 0.16 -1.4
973,793 - MPMX19_03554 0.16 -1.1
973,793 - MPMX19_03554 0.16 +0.6
973,793 - MPMX19_03554 0.16 -0.5
973,834 + MPMX19_03554 0.22 -0.9
973,834 + MPMX19_03554 0.22 +0.2
973,835 - MPMX19_03554 0.22 +0.8
973,893 + MPMX19_03554 0.31 -1.7
973,894 - MPMX19_03554 0.31 -0.2
973,894 - MPMX19_03554 0.31 +0.4
974,136 + MPMX19_03554 0.67 -0.9
974,136 + MPMX19_03554 0.67 +0.8
974,136 + MPMX19_03554 0.67 +0.8
974,136 + MPMX19_03554 0.67 +0.8
974,136 + MPMX19_03554 0.67 -1.1
974,136 + MPMX19_03554 0.67 -0.6
974,137 - MPMX19_03554 0.67 -0.4
974,137 - MPMX19_03554 0.67 -0.6
974,137 - MPMX19_03554 0.67 -0.1
974,221 + MPMX19_03554 0.80 +1.4
974,221 + MPMX19_03554 0.80 -0.4
974,221 + MPMX19_03554 0.80 +0.1
974,221 + MPMX19_03554 0.80 +0.4
974,221 + MPMX19_03554 0.80 -0.5
974,222 - MPMX19_03554 0.80 +1.9
974,222 - MPMX19_03554 0.80 +0.2
974,844 + MPMX19_03555 0.30 +0.6
974,844 + MPMX19_03555 0.30 +0.4
974,844 + MPMX19_03555 0.30 -0.7
974,845 - MPMX19_03555 0.30 -1.1
974,845 - MPMX19_03555 0.30 -0.2
974,845 - MPMX19_03555 0.30 -0.5
974,845 - MPMX19_03555 0.30 -0.5
974,845 - MPMX19_03555 0.30 -0.1
974,845 - MPMX19_03555 0.30 -0.7
974,845 - MPMX19_03555 0.30 -0.5
974,845 - MPMX19_03555 0.30 -1.0
974,845 - MPMX19_03555 0.30 -1.4
974,845 - MPMX19_03555 0.30 -0.7
974,874 + MPMX19_03555 0.32 -0.9
974,874 + MPMX19_03555 0.32 +0.2
974,874 + MPMX19_03555 0.32 -0.3
974,875 - MPMX19_03555 0.33 +0.7
975,003 + MPMX19_03555 0.42 -0.0
975,004 - MPMX19_03555 0.42 -0.1
975,004 - MPMX19_03555 0.42 -0.1
975,087 + MPMX19_03555 0.48 -1.4
975,087 + MPMX19_03555 0.48 -0.1
975,087 + MPMX19_03555 0.48 -1.9
975,087 + MPMX19_03555 0.48 +0.4
975,087 + MPMX19_03555 0.48 -0.9
975,087 + MPMX19_03555 0.48 -1.1
975,087 + MPMX19_03555 0.48 -1.8
975,087 + MPMX19_03555 0.48 -0.7
975,087 + MPMX19_03555 0.48 +0.1
975,087 + MPMX19_03555 0.48 +0.2
975,087 + MPMX19_03555 0.48 +0.3
975,087 + MPMX19_03555 0.48 -0.2
975,087 + MPMX19_03555 0.48 -0.9
975,087 + MPMX19_03555 0.48 -0.2
975,087 + MPMX19_03555 0.48 -1.6
975,087 + MPMX19_03555 0.48 +0.5
975,087 + MPMX19_03555 0.48 +0.3
975,088 - MPMX19_03555 0.48 -0.5
975,088 - MPMX19_03555 0.48 +0.7
975,088 - MPMX19_03555 0.48 -1.4
975,088 - MPMX19_03555 0.48 -1.2
975,088 - MPMX19_03555 0.48 +0.9
975,088 - MPMX19_03555 0.48 +0.2
975,088 - MPMX19_03555 0.48 +0.8
975,088 - MPMX19_03555 0.48 -0.2
975,088 - MPMX19_03555 0.48 +0.3
975,088 - MPMX19_03555 0.48 -1.3
975,088 - MPMX19_03555 0.48 -1.5
975,088 - MPMX19_03555 0.48 -0.1
975,088 - MPMX19_03555 0.48 -0.1
975,088 - MPMX19_03555 0.48 +0.5
975,088 - MPMX19_03555 0.48 +0.5
975,088 - MPMX19_03555 0.48 -0.9
975,088 - MPMX19_03555 0.48 -1.5
975,088 - MPMX19_03555 0.48 -0.3
975,088 - MPMX19_03555 0.48 -1.4
975,088 - MPMX19_03555 0.48 +0.5
975,088 - MPMX19_03555 0.48 -0.7
975,088 - MPMX19_03555 0.48 -0.7
975,088 - MPMX19_03555 0.48 +0.6
975,135 + MPMX19_03555 0.51 -1.5
975,135 + MPMX19_03555 0.51 -0.2
975,135 + MPMX19_03555 0.51 -2.2
975,136 - MPMX19_03555 0.51 +0.5
975,136 - MPMX19_03555 0.51 -1.5
975,136 - MPMX19_03555 0.51 +0.8
975,136 - MPMX19_03555 0.51 +0.6
975,523 - MPMX19_03555 0.79 -0.1
975,523 - MPMX19_03555 0.79 -0.3
975,523 - MPMX19_03555 0.79 -0.1
975,523 - MPMX19_03555 0.79 +0.1
975,523 - MPMX19_03555 0.79 -1.5
975,738 + +0.1
975,738 + -1.7
975,738 + +0.9
975,739 - +0.4
975,739 - -0.8
975,739 - -1.2
975,750 + -0.7
975,750 + -0.8
975,750 + +0.9
975,751 - -0.1
975,751 - -0.6
975,751 - +1.2
975,751 - +0.7
975,805 + -0.1
975,805 + -0.7
975,805 + -0.3
975,805 + -0.7
975,806 - -0.4
975,806 - -0.5
975,806 - -0.4
975,806 - +0.8
975,806 - +0.2
975,806 - -2.5
975,806 - -0.7
976,115 + MPMX19_03556 0.25 -1.5
976,115 + MPMX19_03556 0.25 +1.2
976,283 + MPMX19_03556 0.41 -0.7
976,283 + MPMX19_03556 0.41 -0.5
976,487 + MPMX19_03556 0.59 -0.9
976,487 + MPMX19_03556 0.59 -0.2
976,487 + MPMX19_03556 0.59 -0.9
976,487 + MPMX19_03556 0.59 -0.7
976,488 - MPMX19_03556 0.59 -0.9
976,488 - MPMX19_03556 0.59 -0.1
976,488 - MPMX19_03556 0.59 +0.1
976,488 - MPMX19_03556 0.59 -0.7
976,488 - MPMX19_03556 0.59 +0.1
976,488 - MPMX19_03556 0.59 -0.7
976,691 + MPMX19_03556 0.78 -0.2
976,691 + MPMX19_03556 0.78 -1.5
976,692 - MPMX19_03556 0.78 -1.7
976,692 - MPMX19_03556 0.78 +0.7
976,692 - MPMX19_03556 0.78 -0.1
976,692 - MPMX19_03556 0.78 +0.1
976,692 - MPMX19_03556 0.78 +0.8

Or see this region's nucleotide sequence