Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03547 and MPMX19_03548 are separated by 62 nucleotides MPMX19_03548 and MPMX19_03549 are separated by 123 nucleotides MPMX19_03549 and MPMX19_03550 are separated by 8 nucleotides
MPMX19_03547: MPMX19_03547 - putative oxidoreductase, at 968,386 to 969,111
_03547
MPMX19_03548: MPMX19_03548 - Dihydroanticapsin 7-dehydrogenase, at 969,174 to 969,926
_03548
MPMX19_03549: MPMX19_03549 - HTH-type transcriptional regulator PgrR, at 970,050 to 970,958
_03549
MPMX19_03550: MPMX19_03550 - HTH-type transcriptional regulator DmlR, at 970,967 to 971,926
_03550
Position (kb) 970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.124 kb on + strand at 969.124 kb on + strand at 969.125 kb on - strand at 969.137 kb on - strand at 969.137 kb on - strand at 969.188 kb on - strand at 969.412 kb on + strand, within MPMX19_03548 at 969.413 kb on - strand, within MPMX19_03548 at 969.413 kb on - strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.957 kb on + strand at 969.958 kb on - strand at 969.958 kb on - strand at 969.958 kb on - strand at 970.035 kb on + strand at 970.044 kb on + strand at 970.063 kb on + strand at 970.063 kb on + strand at 970.064 kb on - strand at 970.064 kb on - strand at 970.064 kb on - strand at 970.064 kb on - strand at 970.205 kb on + strand, within MPMX19_03549 at 970.205 kb on + strand, within MPMX19_03549 at 970.205 kb on + strand, within MPMX19_03549 at 970.206 kb on - strand, within MPMX19_03549 at 970.206 kb on - strand, within MPMX19_03549 at 970.206 kb on - strand, within MPMX19_03549 at 970.206 kb on - strand, within MPMX19_03549 at 970.405 kb on - strand, within MPMX19_03549 at 970.567 kb on - strand, within MPMX19_03549 at 970.567 kb on - strand, within MPMX19_03549 at 970.567 kb on - strand, within MPMX19_03549 at 970.657 kb on - strand, within MPMX19_03549 at 970.800 kb on + strand, within MPMX19_03549 at 970.869 kb on + strand at 970.870 kb on - strand at 970.870 kb on - strand at 970.870 kb on - strand at 970.980 kb on + strand at 970.980 kb on + strand at 970.981 kb on - strand at 970.981 kb on - strand at 970.981 kb on - strand at 971.076 kb on + strand, within MPMX19_03550 at 971.076 kb on + strand, within MPMX19_03550 at 971.252 kb on - strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.460 kb on + strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.461 kb on - strand, within MPMX19_03550 at 971.523 kb on + strand, within MPMX19_03550 at 971.523 kb on + strand, within MPMX19_03550 at 971.523 kb on + strand, within MPMX19_03550 at 971.524 kb on - strand, within MPMX19_03550
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 969,124 + -0.3 969,124 + +0.8 969,125 - -0.7 969,137 - -1.9 969,137 - -0.3 969,188 - +0.3 969,412 + MPMX19_03548 0.32 -1.2 969,413 - MPMX19_03548 0.32 -0.1 969,413 - MPMX19_03548 0.32 -0.2 969,466 + MPMX19_03548 0.39 -1.0 969,466 + MPMX19_03548 0.39 +1.3 969,466 + MPMX19_03548 0.39 -0.9 969,466 + MPMX19_03548 0.39 -0.1 969,466 + MPMX19_03548 0.39 -0.4 969,466 + MPMX19_03548 0.39 +0.6 969,466 + MPMX19_03548 0.39 -0.1 969,466 + MPMX19_03548 0.39 -0.1 969,466 + MPMX19_03548 0.39 +0.7 969,466 + MPMX19_03548 0.39 -1.6 969,466 + MPMX19_03548 0.39 -0.9 969,466 + MPMX19_03548 0.39 -0.7 969,466 + MPMX19_03548 0.39 +0.7 969,466 + MPMX19_03548 0.39 -0.7 969,467 - MPMX19_03548 0.39 +0.9 969,467 - MPMX19_03548 0.39 -1.9 969,467 - MPMX19_03548 0.39 -0.7 969,467 - MPMX19_03548 0.39 -0.2 969,467 - MPMX19_03548 0.39 -1.2 969,610 + MPMX19_03548 0.58 -1.0 969,610 + MPMX19_03548 0.58 -1.1 969,610 + MPMX19_03548 0.58 +0.8 969,610 + MPMX19_03548 0.58 +1.4 969,610 + MPMX19_03548 0.58 -0.4 969,611 - MPMX19_03548 0.58 -0.4 969,611 - MPMX19_03548 0.58 -1.8 969,611 - MPMX19_03548 0.58 +0.2 969,611 - MPMX19_03548 0.58 -0.4 969,611 - MPMX19_03548 0.58 -0.5 969,904 + -0.7 969,904 + -0.7 969,904 + -0.9 969,904 + +0.1 969,904 + +2.9 969,904 + -0.8 969,904 + +0.1 969,905 - -1.2 969,905 - -1.2 969,905 - -0.7 969,905 - -1.2 969,905 - -0.3 969,905 - -2.7 969,957 + +1.8 969,958 - -0.2 969,958 - -1.0 969,958 - -1.7 970,035 + -0.8 970,044 + +0.3 970,063 + +0.3 970,063 + +0.3 970,064 - +0.2 970,064 - -0.1 970,064 - -1.0 970,064 - +0.1 970,205 + MPMX19_03549 0.17 +0.9 970,205 + MPMX19_03549 0.17 +1.3 970,205 + MPMX19_03549 0.17 -0.4 970,206 - MPMX19_03549 0.17 -0.9 970,206 - MPMX19_03549 0.17 +0.8 970,206 - MPMX19_03549 0.17 +0.5 970,206 - MPMX19_03549 0.17 +1.6 970,405 - MPMX19_03549 0.39 +0.6 970,567 - MPMX19_03549 0.57 -0.2 970,567 - MPMX19_03549 0.57 +1.3 970,567 - MPMX19_03549 0.57 +1.5 970,657 - MPMX19_03549 0.67 +0.1 970,800 + MPMX19_03549 0.83 -0.9 970,869 + +0.1 970,870 - -1.5 970,870 - -2.5 970,870 - -0.1 970,980 + +0.2 970,980 + -0.1 970,981 - +0.6 970,981 - +1.5 970,981 - +0.6 971,076 + MPMX19_03550 0.11 -1.0 971,076 + MPMX19_03550 0.11 -0.9 971,252 - MPMX19_03550 0.30 +0.9 971,460 + MPMX19_03550 0.51 +0.1 971,460 + MPMX19_03550 0.51 -0.1 971,460 + MPMX19_03550 0.51 +0.0 971,460 + MPMX19_03550 0.51 -0.9 971,460 + MPMX19_03550 0.51 -0.9 971,460 + MPMX19_03550 0.51 -0.1 971,460 + MPMX19_03550 0.51 -1.3 971,461 - MPMX19_03550 0.51 +0.8 971,461 - MPMX19_03550 0.51 +0.7 971,461 - MPMX19_03550 0.51 -0.4 971,461 - MPMX19_03550 0.51 -0.3 971,461 - MPMX19_03550 0.51 +0.3 971,461 - MPMX19_03550 0.51 +0.1 971,461 - MPMX19_03550 0.51 +1.1 971,461 - MPMX19_03550 0.51 -0.4 971,461 - MPMX19_03550 0.51 +0.2 971,523 + MPMX19_03550 0.58 -0.9 971,523 + MPMX19_03550 0.58 +0.5 971,523 + MPMX19_03550 0.58 -0.6 971,524 - MPMX19_03550 0.58 +0.3
Or see this region's nucleotide sequence