Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03542

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03540 and MPMX19_03541 are separated by 4 nucleotidesMPMX19_03541 and MPMX19_03542 overlap by 8 nucleotidesMPMX19_03542 and MPMX19_03543 overlap by 4 nucleotides MPMX19_03540: MPMX19_03540 - putative deoxycholate-binding periplasmic protein YgiS, at 959,256 to 960,827 _03540 MPMX19_03541: MPMX19_03541 - Glutathione transport system permease protein GsiC, at 960,832 to 961,779 _03541 MPMX19_03542: MPMX19_03542 - Glutathione transport system permease protein GsiD, at 961,772 to 962,602 _03542 MPMX19_03543: MPMX19_03543 - putative ABC transporter ATP-binding protein YejF, at 962,599 to 964,200 _03543 Position (kb) 961 962 963Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 960.874 kb on + strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 960.875 kb on - strandat 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.028 kb on - strand, within MPMX19_03541at 961.175 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.243 kb on + strand, within MPMX19_03541at 961.244 kb on - strand, within MPMX19_03541at 961.244 kb on - strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.333 kb on + strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.334 kb on - strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.468 kb on + strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.469 kb on - strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.470 kb on + strand, within MPMX19_03541at 961.471 kb on - strand, within MPMX19_03541at 961.580 kb on - strand, within MPMX19_03541at 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.711 kb on + strandat 961.712 kb on - strandat 961.744 kb on + strandat 961.744 kb on + strandat 961.745 kb on - strandat 961.745 kb on - strandat 962.072 kb on + strand, within MPMX19_03542at 962.260 kb on - strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.273 kb on + strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.274 kb on - strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.480 kb on + strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.481 kb on - strand, within MPMX19_03542at 962.578 kb on + strandat 962.578 kb on + strandat 962.578 kb on + strandat 962.579 kb on - strandat 962.579 kb on - strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.626 kb on + strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.627 kb on - strandat 962.638 kb on + strandat 962.638 kb on + strandat 962.639 kb on - strandat 962.639 kb on - strandat 962.639 kb on - strandat 962.639 kb on - strandat 963.226 kb on + strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.227 kb on - strand, within MPMX19_03543at 963.451 kb on + strand, within MPMX19_03543at 963.452 kb on - strand, within MPMX19_03543

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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960,874 + +0.0
960,875 - -0.8
960,875 - +0.3
960,875 - +1.6
960,875 - -0.3
960,875 - -1.4
960,875 - -0.9
961,028 - MPMX19_03541 0.21 -1.2
961,028 - MPMX19_03541 0.21 -0.0
961,028 - MPMX19_03541 0.21 +0.7
961,028 - MPMX19_03541 0.21 +0.9
961,028 - MPMX19_03541 0.21 +0.5
961,175 + MPMX19_03541 0.36 +0.3
961,243 + MPMX19_03541 0.43 -0.1
961,243 + MPMX19_03541 0.43 +0.1
961,243 + MPMX19_03541 0.43 -0.9
961,243 + MPMX19_03541 0.43 -1.0
961,243 + MPMX19_03541 0.43 +1.9
961,244 - MPMX19_03541 0.43 -1.7
961,244 - MPMX19_03541 0.43 -0.2
961,333 + MPMX19_03541 0.53 +0.7
961,333 + MPMX19_03541 0.53 +0.3
961,333 + MPMX19_03541 0.53 -0.9
961,334 - MPMX19_03541 0.53 -2.2
961,334 - MPMX19_03541 0.53 -1.5
961,334 - MPMX19_03541 0.53 +2.2
961,468 + MPMX19_03541 0.67 +1.4
961,468 + MPMX19_03541 0.67 +0.4
961,468 + MPMX19_03541 0.67 -0.7
961,468 + MPMX19_03541 0.67 -1.0
961,468 + MPMX19_03541 0.67 +0.5
961,468 + MPMX19_03541 0.67 +0.4
961,468 + MPMX19_03541 0.67 -0.6
961,468 + MPMX19_03541 0.67 -0.7
961,468 + MPMX19_03541 0.67 -1.1
961,468 + MPMX19_03541 0.67 -1.5
961,469 - MPMX19_03541 0.67 +1.2
961,469 - MPMX19_03541 0.67 -2.8
961,469 - MPMX19_03541 0.67 +0.2
961,469 - MPMX19_03541 0.67 +0.6
961,469 - MPMX19_03541 0.67 -0.3
961,469 - MPMX19_03541 0.67 -2.1
961,469 - MPMX19_03541 0.67 -1.6
961,469 - MPMX19_03541 0.67 -0.2
961,469 - MPMX19_03541 0.67 -1.4
961,469 - MPMX19_03541 0.67 -1.1
961,470 + MPMX19_03541 0.67 +0.3
961,470 + MPMX19_03541 0.67 -0.5
961,470 + MPMX19_03541 0.67 -0.3
961,471 - MPMX19_03541 0.67 -0.2
961,580 - MPMX19_03541 0.79 -0.3
961,711 + +1.3
961,711 + +0.5
961,711 + +1.5
961,711 + -0.5
961,712 - +0.6
961,744 + +0.3
961,744 + -0.3
961,745 - +0.5
961,745 - -1.5
962,072 + MPMX19_03542 0.36 +1.3
962,260 - MPMX19_03542 0.59 -0.2
962,273 + MPMX19_03542 0.60 -0.4
962,273 + MPMX19_03542 0.60 -0.1
962,273 + MPMX19_03542 0.60 -1.2
962,273 + MPMX19_03542 0.60 -1.1
962,273 + MPMX19_03542 0.60 -0.5
962,273 + MPMX19_03542 0.60 -0.3
962,273 + MPMX19_03542 0.60 -1.0
962,273 + MPMX19_03542 0.60 -0.3
962,274 - MPMX19_03542 0.60 -0.4
962,274 - MPMX19_03542 0.60 -2.5
962,274 - MPMX19_03542 0.60 +1.2
962,274 - MPMX19_03542 0.60 +0.4
962,274 - MPMX19_03542 0.60 +0.7
962,274 - MPMX19_03542 0.60 -1.2
962,274 - MPMX19_03542 0.60 +0.0
962,274 - MPMX19_03542 0.60 +1.0
962,480 + MPMX19_03542 0.85 -1.5
962,480 + MPMX19_03542 0.85 +3.5
962,480 + MPMX19_03542 0.85 +0.3
962,480 + MPMX19_03542 0.85 +0.1
962,480 + MPMX19_03542 0.85 -0.7
962,480 + MPMX19_03542 0.85 +0.2
962,480 + MPMX19_03542 0.85 -0.2
962,481 - MPMX19_03542 0.85 -2.1
962,481 - MPMX19_03542 0.85 +0.0
962,481 - MPMX19_03542 0.85 +0.6
962,481 - MPMX19_03542 0.85 +0.1
962,481 - MPMX19_03542 0.85 -0.2
962,481 - MPMX19_03542 0.85 -1.6
962,481 - MPMX19_03542 0.85 -0.4
962,481 - MPMX19_03542 0.85 -0.8
962,578 + -1.1
962,578 + -0.2
962,578 + +1.1
962,579 - -1.1
962,579 - -1.7
962,626 + -1.2
962,626 + -0.8
962,626 + -0.8
962,626 + -1.7
962,627 - +0.3
962,627 - +0.2
962,627 - +0.0
962,627 - +0.3
962,638 + -0.1
962,638 + -2.3
962,639 - -0.7
962,639 - -2.2
962,639 - +0.1
962,639 - -0.6
963,226 + MPMX19_03543 0.39 -0.6
963,227 - MPMX19_03543 0.39 -0.5
963,227 - MPMX19_03543 0.39 +0.1
963,227 - MPMX19_03543 0.39 -0.1
963,227 - MPMX19_03543 0.39 -1.0
963,227 - MPMX19_03543 0.39 -0.2
963,451 + MPMX19_03543 0.53 -0.6
963,452 - MPMX19_03543 0.53 +0.9

Or see this region's nucleotide sequence