Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03535 and MPMX19_03536 overlap by 8 nucleotides MPMX19_03536 and MPMX19_03537 overlap by 1 nucleotides MPMX19_03537 and MPMX19_03538 are separated by 69 nucleotides MPMX19_03538 and MPMX19_03539 are separated by 104 nucleotides
MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513
_03535
MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261
_03536
MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962
_03537
MPMX19_03538: MPMX19_03538 - HTH-type transcriptional repressor NagR, at 957,032 to 957,781
_03538
MPMX19_03539: MPMX19_03539 - Acetylornithine deacetylase, at 957,886 to 959,259
_03539
Position (kb) 956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.379 kb on + strand, within MPMX19_03535 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.236 kb on - strand at 956.291 kb on + strand at 956.292 kb on - strand at 956.400 kb on + strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.949 kb on - strand at 956.949 kb on - strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.255 kb on + strand, within MPMX19_03538 at 957.255 kb on + strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.498 kb on + strand, within MPMX19_03538 at 957.499 kb on - strand, within MPMX19_03538 at 957.499 kb on - strand, within MPMX19_03538 at 957.501 kb on + strand, within MPMX19_03538 at 957.501 kb on + strand, within MPMX19_03538 at 957.502 kb on - strand, within MPMX19_03538 at 957.860 kb on - strand at 957.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 955,379 + MPMX19_03535 0.86 +1.5 955,912 + MPMX19_03536 0.54 +0.2 955,912 + MPMX19_03536 0.54 -0.4 955,912 + MPMX19_03536 0.54 -0.2 955,912 + MPMX19_03536 0.54 -1.1 955,912 + MPMX19_03536 0.54 -0.3 955,913 - MPMX19_03536 0.54 +0.7 955,913 - MPMX19_03536 0.54 -0.1 955,913 - MPMX19_03536 0.54 -0.9 956,169 + MPMX19_03536 0.88 -1.4 956,169 + MPMX19_03536 0.88 -1.0 956,169 + MPMX19_03536 0.88 -2.1 956,169 + MPMX19_03536 0.88 -1.5 956,170 - MPMX19_03536 0.88 +0.9 956,170 - MPMX19_03536 0.88 -0.7 956,170 - MPMX19_03536 0.88 +0.2 956,235 + +0.6 956,235 + -0.1 956,235 + -0.2 956,235 + -0.6 956,236 - -0.2 956,291 + +0.2 956,292 - -0.5 956,400 + MPMX19_03537 0.20 -0.4 956,401 - MPMX19_03537 0.20 -0.1 956,401 - MPMX19_03537 0.20 +0.1 956,401 - MPMX19_03537 0.20 -2.4 956,948 + +1.3 956,948 + +0.2 956,948 + -0.7 956,948 + +0.6 956,948 + +1.3 956,948 + +0.3 956,948 + -1.7 956,948 + -0.2 956,949 - -0.5 956,949 - -0.1 957,051 + -0.9 957,051 + -0.4 957,051 + -1.2 957,051 + -0.5 957,051 + -0.9 957,051 + -0.1 957,051 + +1.5 957,051 + -0.4 957,051 + +1.1 957,051 + +0.5 957,051 + +0.2 957,051 + +0.9 957,051 + -0.8 957,052 - -1.9 957,052 - -0.5 957,052 - +0.5 957,052 - -1.2 957,052 - +0.7 957,052 - -0.9 957,052 - +0.5 957,052 - -1.6 957,052 - +0.3 957,052 - +0.2 957,052 - -0.7 957,052 - -1.2 957,052 - +0.5 957,052 - -0.5 957,052 - +2.5 957,052 - -1.0 957,052 - -0.1 957,255 + MPMX19_03538 0.30 -0.7 957,255 + MPMX19_03538 0.30 -0.4 957,256 - MPMX19_03538 0.30 -0.9 957,256 - MPMX19_03538 0.30 +0.3 957,256 - MPMX19_03538 0.30 -2.0 957,498 + MPMX19_03538 0.62 -0.7 957,499 - MPMX19_03538 0.62 -0.5 957,499 - MPMX19_03538 0.62 -1.0 957,501 + MPMX19_03538 0.63 -1.2 957,501 + MPMX19_03538 0.63 -0.2 957,502 - MPMX19_03538 0.63 -0.1 957,860 - -1.2 957,936 + -0.8
Or see this region's nucleotide sequence