Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03534

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03533 and MPMX19_03534 are separated by 32 nucleotidesMPMX19_03534 and MPMX19_03535 overlap by 4 nucleotidesMPMX19_03535 and MPMX19_03536 overlap by 8 nucleotides MPMX19_03533: MPMX19_03533 - hypothetical protein, at 952,366 to 953,562 _03533 MPMX19_03534: MPMX19_03534 - High-affinity branched-chain amino acid transport system permease protein LivH, at 953,595 to 954,527 _03534 MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513 _03535 MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261 _03536 Position (kb) 953 954 955Strain fitness (log2 ratio) -2 -1 0 1 2at 952.819 kb on + strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.874 kb on - strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.946 kb on - strand, within MPMX19_03533at 952.946 kb on - strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 953.089 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.266 kb on + strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.267 kb on - strand, within MPMX19_03533at 953.296 kb on + strand, within MPMX19_03533at 953.296 kb on + strand, within MPMX19_03533at 953.296 kb on + strand, within MPMX19_03533at 953.297 kb on - strand, within MPMX19_03533at 953.297 kb on - strand, within MPMX19_03533at 953.536 kb on + strandat 953.537 kb on - strandat 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.721 kb on + strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.722 kb on - strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.736 kb on + strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 953.737 kb on - strand, within MPMX19_03534at 954.018 kb on + strand, within MPMX19_03534at 954.018 kb on + strand, within MPMX19_03534at 954.027 kb on + strand, within MPMX19_03534at 954.027 kb on + strand, within MPMX19_03534at 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.459 kb on + strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strandat 954.746 kb on + strand, within MPMX19_03535at 954.747 kb on - strand, within MPMX19_03535at 954.827 kb on + strand, within MPMX19_03535at 954.827 kb on + strand, within MPMX19_03535at 954.827 kb on + strand, within MPMX19_03535at 954.828 kb on - strand, within MPMX19_03535at 954.957 kb on - strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.965 kb on + strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 954.966 kb on - strand, within MPMX19_03535at 955.151 kb on + strand, within MPMX19_03535at 955.158 kb on - strand, within MPMX19_03535at 955.172 kb on + strand, within MPMX19_03535at 955.172 kb on + strand, within MPMX19_03535at 955.173 kb on - strand, within MPMX19_03535at 955.379 kb on + strand, within MPMX19_03535

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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952,819 + MPMX19_03533 0.38 +1.9
952,820 - MPMX19_03533 0.38 -0.1
952,820 - MPMX19_03533 0.38 -1.2
952,820 - MPMX19_03533 0.38 +0.9
952,873 + MPMX19_03533 0.42 -1.2
952,873 + MPMX19_03533 0.42 -0.2
952,873 + MPMX19_03533 0.42 -0.4
952,874 - MPMX19_03533 0.42 +1.1
952,903 + MPMX19_03533 0.45 -0.1
952,903 + MPMX19_03533 0.45 -0.4
952,903 + MPMX19_03533 0.45 +1.1
952,904 - MPMX19_03533 0.45 +0.2
952,904 - MPMX19_03533 0.45 -1.2
952,904 - MPMX19_03533 0.45 -0.6
952,904 - MPMX19_03533 0.45 +0.9
952,945 + MPMX19_03533 0.48 -0.4
952,945 + MPMX19_03533 0.48 -0.4
952,945 + MPMX19_03533 0.48 +0.1
952,946 - MPMX19_03533 0.48 +0.9
952,946 - MPMX19_03533 0.48 +0.4
952,972 + MPMX19_03533 0.51 -1.0
952,972 + MPMX19_03533 0.51 +0.4
952,972 + MPMX19_03533 0.51 -0.9
952,972 + MPMX19_03533 0.51 -0.1
952,972 + MPMX19_03533 0.51 +0.1
952,972 + MPMX19_03533 0.51 -0.8
952,972 + MPMX19_03533 0.51 +0.1
952,972 + MPMX19_03533 0.51 +0.4
952,972 + MPMX19_03533 0.51 -0.1
952,972 + MPMX19_03533 0.51 +0.9
952,972 + MPMX19_03533 0.51 +1.5
952,972 + MPMX19_03533 0.51 +0.5
952,972 + MPMX19_03533 0.51 -0.5
952,972 + MPMX19_03533 0.51 +1.1
952,972 + MPMX19_03533 0.51 -2.1
952,972 + MPMX19_03533 0.51 -0.3
952,973 - MPMX19_03533 0.51 +1.1
952,973 - MPMX19_03533 0.51 +0.5
952,973 - MPMX19_03533 0.51 -1.5
952,973 - MPMX19_03533 0.51 +0.3
952,973 - MPMX19_03533 0.51 +0.7
952,973 - MPMX19_03533 0.51 +0.9
952,973 - MPMX19_03533 0.51 -0.6
952,973 - MPMX19_03533 0.51 -0.4
952,973 - MPMX19_03533 0.51 -0.1
952,973 - MPMX19_03533 0.51 -0.1
953,089 + MPMX19_03533 0.60 +0.2
953,266 + MPMX19_03533 0.75 -0.9
953,266 + MPMX19_03533 0.75 -0.6
953,266 + MPMX19_03533 0.75 -1.3
953,266 + MPMX19_03533 0.75 -0.8
953,266 + MPMX19_03533 0.75 -1.4
953,266 + MPMX19_03533 0.75 -0.9
953,266 + MPMX19_03533 0.75 -1.1
953,266 + MPMX19_03533 0.75 +0.6
953,266 + MPMX19_03533 0.75 +0.9
953,266 + MPMX19_03533 0.75 -1.2
953,267 - MPMX19_03533 0.75 -1.4
953,267 - MPMX19_03533 0.75 -1.8
953,267 - MPMX19_03533 0.75 -1.7
953,267 - MPMX19_03533 0.75 +0.3
953,267 - MPMX19_03533 0.75 +0.7
953,267 - MPMX19_03533 0.75 +0.0
953,267 - MPMX19_03533 0.75 -1.6
953,267 - MPMX19_03533 0.75 -0.9
953,296 + MPMX19_03533 0.78 +0.1
953,296 + MPMX19_03533 0.78 -0.3
953,296 + MPMX19_03533 0.78 -0.1
953,297 - MPMX19_03533 0.78 -1.5
953,297 - MPMX19_03533 0.78 +0.5
953,536 + -0.6
953,537 - -0.0
953,721 + MPMX19_03534 0.14 +0.6
953,721 + MPMX19_03534 0.14 -0.9
953,721 + MPMX19_03534 0.14 -0.2
953,721 + MPMX19_03534 0.14 -1.2
953,721 + MPMX19_03534 0.14 -2.1
953,721 + MPMX19_03534 0.14 -0.7
953,721 + MPMX19_03534 0.14 -1.6
953,721 + MPMX19_03534 0.14 -0.5
953,721 + MPMX19_03534 0.14 +0.0
953,721 + MPMX19_03534 0.14 -0.6
953,721 + MPMX19_03534 0.14 -0.2
953,721 + MPMX19_03534 0.14 -1.2
953,721 + MPMX19_03534 0.14 -1.1
953,722 - MPMX19_03534 0.14 -0.6
953,722 - MPMX19_03534 0.14 -0.8
953,722 - MPMX19_03534 0.14 -0.9
953,722 - MPMX19_03534 0.14 +1.9
953,722 - MPMX19_03534 0.14 -0.9
953,722 - MPMX19_03534 0.14 +0.9
953,722 - MPMX19_03534 0.14 +0.9
953,722 - MPMX19_03534 0.14 -0.9
953,722 - MPMX19_03534 0.14 -1.6
953,736 + MPMX19_03534 0.15 -0.1
953,736 + MPMX19_03534 0.15 -0.4
953,736 + MPMX19_03534 0.15 -1.0
953,736 + MPMX19_03534 0.15 +0.1
953,736 + MPMX19_03534 0.15 -1.4
953,737 - MPMX19_03534 0.15 -1.4
953,737 - MPMX19_03534 0.15 -1.4
953,737 - MPMX19_03534 0.15 +1.6
953,737 - MPMX19_03534 0.15 -0.6
953,737 - MPMX19_03534 0.15 -1.7
954,018 + MPMX19_03534 0.45 -0.2
954,018 + MPMX19_03534 0.45 -1.1
954,027 + MPMX19_03534 0.46 +0.1
954,027 + MPMX19_03534 0.46 -0.4
954,459 + -0.1
954,459 + -1.1
954,459 + -1.5
954,459 + +0.3
954,459 + -0.5
954,459 + +0.5
954,459 + +0.1
954,459 + -0.4
954,460 - -0.3
954,460 - -0.8
954,460 - +0.5
954,460 - -1.6
954,460 - -0.5
954,460 - +1.4
954,460 - -1.0
954,460 - +0.3
954,460 - -0.2
954,746 + MPMX19_03535 0.22 +0.1
954,747 - MPMX19_03535 0.23 -1.7
954,827 + MPMX19_03535 0.31 -0.3
954,827 + MPMX19_03535 0.31 +0.4
954,827 + MPMX19_03535 0.31 -1.0
954,828 - MPMX19_03535 0.31 +1.6
954,957 - MPMX19_03535 0.44 +0.4
954,965 + MPMX19_03535 0.45 -1.5
954,965 + MPMX19_03535 0.45 +0.4
954,965 + MPMX19_03535 0.45 -1.6
954,965 + MPMX19_03535 0.45 -0.6
954,965 + MPMX19_03535 0.45 -1.3
954,966 - MPMX19_03535 0.45 -1.6
954,966 - MPMX19_03535 0.45 +0.4
954,966 - MPMX19_03535 0.45 -0.2
954,966 - MPMX19_03535 0.45 -1.2
954,966 - MPMX19_03535 0.45 +0.5
954,966 - MPMX19_03535 0.45 +0.1
954,966 - MPMX19_03535 0.45 -0.8
954,966 - MPMX19_03535 0.45 -1.2
954,966 - MPMX19_03535 0.45 -1.1
955,151 + MPMX19_03535 0.63 +0.1
955,158 - MPMX19_03535 0.64 -1.4
955,172 + MPMX19_03535 0.65 -0.2
955,172 + MPMX19_03535 0.65 +0.5
955,173 - MPMX19_03535 0.66 -1.2
955,379 + MPMX19_03535 0.86 +1.5

Or see this region's nucleotide sequence