Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03529

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03528 and MPMX19_03529 are separated by 35 nucleotidesMPMX19_03529 and MPMX19_03530 are separated by 122 nucleotidesMPMX19_03530 and MPMX19_03531 are separated by 31 nucleotides MPMX19_03528: MPMX19_03528 - Sialic acid TRAP transporter large permease protein SiaM, at 947,401 to 948,681 _03528 MPMX19_03529: MPMX19_03529 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 948,717 to 949,736 _03529 MPMX19_03530: MPMX19_03530 - HTH-type transcriptional repressor NicS, at 949,859 to 950,536 _03530 MPMX19_03531: MPMX19_03531 - PCP degradation transcriptional activation protein, at 950,568 to 951,506 _03531 Position (kb) 948 949 950Strain fitness (log2 ratio) -2 -1 0 1at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.875 kb on + strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.876 kb on - strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.971 kb on + strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 947.972 kb on - strand, within MPMX19_03528at 948.139 kb on + strand, within MPMX19_03528at 948.140 kb on - strand, within MPMX19_03528at 948.166 kb on + strand, within MPMX19_03528at 948.166 kb on + strand, within MPMX19_03528at 948.167 kb on - strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.193 kb on + strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.194 kb on - strand, within MPMX19_03528at 948.204 kb on - strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.466 kb on + strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.467 kb on - strand, within MPMX19_03528at 948.798 kb on + strandat 948.798 kb on + strandat 948.798 kb on + strandat 948.799 kb on - strandat 948.799 kb on - strandat 948.799 kb on - strandat 948.967 kb on + strand, within MPMX19_03529at 948.967 kb on + strand, within MPMX19_03529at 948.967 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.257 kb on + strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.258 kb on - strand, within MPMX19_03529at 949.317 kb on + strand, within MPMX19_03529at 949.317 kb on + strand, within MPMX19_03529at 949.318 kb on - strand, within MPMX19_03529at 949.318 kb on - strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.404 kb on + strand, within MPMX19_03529at 949.405 kb on - strand, within MPMX19_03529at 949.428 kb on + strand, within MPMX19_03529at 949.429 kb on - strand, within MPMX19_03529at 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.701 kb on + strandat 949.702 kb on - strandat 949.702 kb on - strandat 949.811 kb on + strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.043 kb on - strand, within MPMX19_03530at 950.043 kb on - strand, within MPMX19_03530at 950.045 kb on + strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.186 kb on + strand, within MPMX19_03530at 950.186 kb on + strand, within MPMX19_03530

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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947,875 + MPMX19_03528 0.37 +0.3
947,875 + MPMX19_03528 0.37 -0.4
947,875 + MPMX19_03528 0.37 +0.8
947,875 + MPMX19_03528 0.37 -0.8
947,875 + MPMX19_03528 0.37 -0.3
947,875 + MPMX19_03528 0.37 -1.1
947,876 - MPMX19_03528 0.37 +0.0
947,876 - MPMX19_03528 0.37 -0.6
947,876 - MPMX19_03528 0.37 -1.0
947,876 - MPMX19_03528 0.37 -0.1
947,876 - MPMX19_03528 0.37 +1.4
947,876 - MPMX19_03528 0.37 +0.4
947,876 - MPMX19_03528 0.37 +0.2
947,971 + MPMX19_03528 0.44 +0.2
947,971 + MPMX19_03528 0.44 +0.9
947,971 + MPMX19_03528 0.44 +0.1
947,971 + MPMX19_03528 0.44 +0.4
947,971 + MPMX19_03528 0.44 +0.4
947,971 + MPMX19_03528 0.44 +0.1
947,971 + MPMX19_03528 0.44 -0.9
947,971 + MPMX19_03528 0.44 -0.7
947,971 + MPMX19_03528 0.44 +0.5
947,972 - MPMX19_03528 0.45 +1.1
947,972 - MPMX19_03528 0.45 +0.5
947,972 - MPMX19_03528 0.45 -0.6
947,972 - MPMX19_03528 0.45 -1.1
947,972 - MPMX19_03528 0.45 +0.5
947,972 - MPMX19_03528 0.45 -0.9
947,972 - MPMX19_03528 0.45 -0.2
947,972 - MPMX19_03528 0.45 -0.5
947,972 - MPMX19_03528 0.45 +0.4
947,972 - MPMX19_03528 0.45 +1.5
948,139 + MPMX19_03528 0.58 -0.8
948,140 - MPMX19_03528 0.58 +0.6
948,166 + MPMX19_03528 0.60 +0.6
948,166 + MPMX19_03528 0.60 +0.7
948,167 - MPMX19_03528 0.60 -0.9
948,193 + MPMX19_03528 0.62 -0.5
948,193 + MPMX19_03528 0.62 +0.5
948,193 + MPMX19_03528 0.62 -0.2
948,193 + MPMX19_03528 0.62 -1.2
948,193 + MPMX19_03528 0.62 -0.5
948,193 + MPMX19_03528 0.62 -1.4
948,193 + MPMX19_03528 0.62 +0.2
948,193 + MPMX19_03528 0.62 +1.4
948,193 + MPMX19_03528 0.62 -1.1
948,193 + MPMX19_03528 0.62 +1.1
948,193 + MPMX19_03528 0.62 -0.4
948,194 - MPMX19_03528 0.62 +0.4
948,194 - MPMX19_03528 0.62 -1.5
948,194 - MPMX19_03528 0.62 -0.0
948,194 - MPMX19_03528 0.62 -1.9
948,194 - MPMX19_03528 0.62 -0.5
948,194 - MPMX19_03528 0.62 +0.4
948,194 - MPMX19_03528 0.62 -1.1
948,204 - MPMX19_03528 0.63 +1.1
948,466 + MPMX19_03528 0.83 -0.3
948,466 + MPMX19_03528 0.83 +0.5
948,466 + MPMX19_03528 0.83 -0.1
948,466 + MPMX19_03528 0.83 +0.7
948,467 - MPMX19_03528 0.83 -0.6
948,467 - MPMX19_03528 0.83 -0.4
948,467 - MPMX19_03528 0.83 -1.9
948,467 - MPMX19_03528 0.83 +0.2
948,798 + -0.6
948,798 + -0.6
948,798 + -1.5
948,799 - -1.1
948,799 - -0.6
948,799 - +0.9
948,967 + MPMX19_03529 0.25 -2.1
948,967 + MPMX19_03529 0.25 -1.1
948,967 + MPMX19_03529 0.25 +1.4
949,257 + MPMX19_03529 0.53 -0.9
949,257 + MPMX19_03529 0.53 +0.6
949,257 + MPMX19_03529 0.53 -1.4
949,257 + MPMX19_03529 0.53 -0.9
949,258 - MPMX19_03529 0.53 -0.6
949,258 - MPMX19_03529 0.53 -0.6
949,258 - MPMX19_03529 0.53 +0.6
949,258 - MPMX19_03529 0.53 -0.5
949,258 - MPMX19_03529 0.53 +0.8
949,258 - MPMX19_03529 0.53 -0.9
949,258 - MPMX19_03529 0.53 +0.1
949,317 + MPMX19_03529 0.59 -1.4
949,317 + MPMX19_03529 0.59 +0.7
949,318 - MPMX19_03529 0.59 -2.1
949,318 - MPMX19_03529 0.59 +0.5
949,404 + MPMX19_03529 0.67 -1.5
949,404 + MPMX19_03529 0.67 -0.1
949,404 + MPMX19_03529 0.67 +0.3
949,405 - MPMX19_03529 0.67 -0.1
949,428 + MPMX19_03529 0.70 +0.8
949,429 - MPMX19_03529 0.70 +1.2
949,662 + -1.1
949,662 + -2.0
949,662 + -0.2
949,662 + +0.6
949,662 + -1.6
949,662 + +0.2
949,662 + +0.1
949,663 - -1.3
949,663 - +0.5
949,663 - +0.1
949,663 - -0.9
949,663 - -1.5
949,701 + +0.2
949,702 - -1.5
949,702 - +1.2
949,811 + -0.2
949,812 - +0.9
949,812 - -0.5
949,812 - -0.8
949,812 - +0.6
949,812 - -0.7
950,039 + MPMX19_03530 0.27 +0.8
950,039 + MPMX19_03530 0.27 -2.5
950,039 + MPMX19_03530 0.27 -0.1
950,039 + MPMX19_03530 0.27 -0.4
950,039 + MPMX19_03530 0.27 -1.0
950,039 + MPMX19_03530 0.27 -0.7
950,039 + MPMX19_03530 0.27 +0.3
950,039 + MPMX19_03530 0.27 +0.5
950,039 + MPMX19_03530 0.27 -0.5
950,039 + MPMX19_03530 0.27 -0.5
950,040 - MPMX19_03530 0.27 +0.8
950,040 - MPMX19_03530 0.27 +0.9
950,040 - MPMX19_03530 0.27 +1.3
950,040 - MPMX19_03530 0.27 -1.1
950,040 - MPMX19_03530 0.27 +1.2
950,040 - MPMX19_03530 0.27 -0.7
950,040 - MPMX19_03530 0.27 +1.1
950,040 - MPMX19_03530 0.27 -0.6
950,040 - MPMX19_03530 0.27 -1.2
950,043 - MPMX19_03530 0.27 +0.2
950,043 - MPMX19_03530 0.27 -1.1
950,045 + MPMX19_03530 0.27 -0.6
950,046 - MPMX19_03530 0.28 -2.0
950,046 - MPMX19_03530 0.28 +0.6
950,046 - MPMX19_03530 0.28 -0.6
950,069 + MPMX19_03530 0.31 -0.1
950,069 + MPMX19_03530 0.31 -0.4
950,069 + MPMX19_03530 0.31 +0.4
950,069 + MPMX19_03530 0.31 -0.1
950,069 + MPMX19_03530 0.31 -1.6
950,069 + MPMX19_03530 0.31 +0.6
950,069 + MPMX19_03530 0.31 +0.8
950,069 + MPMX19_03530 0.31 -1.5
950,069 + MPMX19_03530 0.31 +0.1
950,070 - MPMX19_03530 0.31 -0.9
950,070 - MPMX19_03530 0.31 -0.2
950,070 - MPMX19_03530 0.31 +0.4
950,070 - MPMX19_03530 0.31 -1.8
950,070 - MPMX19_03530 0.31 -2.4
950,070 - MPMX19_03530 0.31 +1.5
950,070 - MPMX19_03530 0.31 +0.9
950,070 - MPMX19_03530 0.31 -0.4
950,093 + MPMX19_03530 0.35 +0.0
950,093 + MPMX19_03530 0.35 -0.5
950,093 + MPMX19_03530 0.35 -0.1
950,093 + MPMX19_03530 0.35 -0.6
950,093 + MPMX19_03530 0.35 +0.7
950,093 + MPMX19_03530 0.35 +0.9
950,094 - MPMX19_03530 0.35 +0.5
950,094 - MPMX19_03530 0.35 +0.2
950,094 - MPMX19_03530 0.35 +0.6
950,094 - MPMX19_03530 0.35 -1.4
950,094 - MPMX19_03530 0.35 -1.3
950,094 - MPMX19_03530 0.35 +0.5
950,094 - MPMX19_03530 0.35 +0.8
950,094 - MPMX19_03530 0.35 +0.6
950,186 + MPMX19_03530 0.48 -0.2
950,186 + MPMX19_03530 0.48 +0.4

Or see this region's nucleotide sequence