Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03524 and MPMX19_03525 are separated by 40 nucleotides MPMX19_03525 and MPMX19_03526 overlap by 4 nucleotides MPMX19_03526 and MPMX19_03527 are separated by 57 nucleotides
MPMX19_03524: MPMX19_03524 - hypothetical protein, at 943,384 to 945,315
_03524
MPMX19_03525: MPMX19_03525 - 3-dehydroquinate dehydratase, at 945,356 to 945,805
_03525
MPMX19_03526: MPMX19_03526 - Quinate/shikimate dehydrogenase (NAD(+)), at 945,802 to 946,704
_03526
MPMX19_03527: MPMX19_03527 - hypothetical protein, at 946,762 to 947,388
_03527
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1
2 at 944.366 kb on - strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.593 kb on + strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.594 kb on - strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.773 kb on + strand, within MPMX19_03524 at 944.774 kb on - strand, within MPMX19_03524 at 944.774 kb on - strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.055 kb on + strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.056 kb on - strand, within MPMX19_03524 at 945.058 kb on + strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.059 kb on - strand, within MPMX19_03524 at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.130 kb on + strand at 945.131 kb on - strand at 945.131 kb on - strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.166 kb on + strand at 945.167 kb on - strand at 945.304 kb on + strand at 945.304 kb on + strand at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.425 kb on + strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.426 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.702 kb on - strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.752 kb on + strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.753 kb on - strand, within MPMX19_03525 at 945.843 kb on + strand at 945.843 kb on + strand at 945.843 kb on + strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.844 kb on - strand at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 945.938 kb on - strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.018 kb on + strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.019 kb on - strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.039 kb on + strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.040 kb on - strand, within MPMX19_03526 at 946.519 kb on + strand, within MPMX19_03526 at 946.519 kb on + strand, within MPMX19_03526 at 946.520 kb on - strand, within MPMX19_03526 at 946.520 kb on - strand, within MPMX19_03526 at 946.705 kb on + strand at 946.706 kb on - strand at 946.722 kb on + strand at 946.722 kb on + strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.723 kb on - strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.728 kb on + strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.729 kb on - strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.783 kb on + strand at 946.784 kb on - strand at 946.784 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 944,366 - MPMX19_03524 0.51 +0.6 944,593 + MPMX19_03524 0.63 -0.4 944,593 + MPMX19_03524 0.63 -0.3 944,593 + MPMX19_03524 0.63 +1.4 944,593 + MPMX19_03524 0.63 -1.1 944,593 + MPMX19_03524 0.63 -1.5 944,593 + MPMX19_03524 0.63 -0.5 944,593 + MPMX19_03524 0.63 -1.6 944,593 + MPMX19_03524 0.63 -1.1 944,594 - MPMX19_03524 0.63 -0.4 944,594 - MPMX19_03524 0.63 +1.1 944,594 - MPMX19_03524 0.63 -0.2 944,594 - MPMX19_03524 0.63 +0.5 944,594 - MPMX19_03524 0.63 -1.6 944,773 + MPMX19_03524 0.72 +0.1 944,773 + MPMX19_03524 0.72 +0.4 944,773 + MPMX19_03524 0.72 -0.6 944,773 + MPMX19_03524 0.72 +0.6 944,774 - MPMX19_03524 0.72 -0.6 944,774 - MPMX19_03524 0.72 +0.3 945,055 + MPMX19_03524 0.86 -0.4 945,055 + MPMX19_03524 0.86 -0.6 945,055 + MPMX19_03524 0.86 -1.1 945,055 + MPMX19_03524 0.86 +0.5 945,055 + MPMX19_03524 0.86 +0.9 945,056 - MPMX19_03524 0.87 +0.1 945,056 - MPMX19_03524 0.87 +0.9 945,056 - MPMX19_03524 0.87 +0.2 945,056 - MPMX19_03524 0.87 +0.9 945,056 - MPMX19_03524 0.87 -0.8 945,056 - MPMX19_03524 0.87 -0.2 945,056 - MPMX19_03524 0.87 -1.3 945,056 - MPMX19_03524 0.87 -0.2 945,056 - MPMX19_03524 0.87 -0.8 945,058 + MPMX19_03524 0.87 -0.6 945,059 - MPMX19_03524 0.87 +1.4 945,059 - MPMX19_03524 0.87 -0.8 945,130 + -0.1 945,130 + +0.4 945,130 + -1.4 945,130 + -2.1 945,130 + +1.6 945,130 + -1.4 945,130 + -0.5 945,131 - -0.4 945,131 - -0.6 945,166 + +1.9 945,166 + -0.6 945,166 + -0.1 945,166 + -0.6 945,166 + +0.4 945,166 + +0.6 945,166 + -1.4 945,166 + +0.1 945,166 + -1.4 945,166 + -0.1 945,166 + +0.1 945,166 + -1.2 945,167 - -0.1 945,304 + -1.1 945,304 + -0.2 945,425 + MPMX19_03525 0.15 -0.2 945,425 + MPMX19_03525 0.15 -2.4 945,425 + MPMX19_03525 0.15 +0.4 945,425 + MPMX19_03525 0.15 +0.3 945,425 + MPMX19_03525 0.15 -1.1 945,425 + MPMX19_03525 0.15 -1.4 945,425 + MPMX19_03525 0.15 -1.1 945,425 + MPMX19_03525 0.15 -0.1 945,425 + MPMX19_03525 0.15 -0.5 945,425 + MPMX19_03525 0.15 +0.7 945,425 + MPMX19_03525 0.15 -0.9 945,425 + MPMX19_03525 0.15 -1.0 945,425 + MPMX19_03525 0.15 +0.1 945,425 + MPMX19_03525 0.15 +0.2 945,425 + MPMX19_03525 0.15 -1.0 945,425 + MPMX19_03525 0.15 -0.6 945,425 + MPMX19_03525 0.15 -1.8 945,425 + MPMX19_03525 0.15 +0.0 945,426 - MPMX19_03525 0.16 -1.4 945,426 - MPMX19_03525 0.16 +0.1 945,426 - MPMX19_03525 0.16 -1.0 945,426 - MPMX19_03525 0.16 -2.6 945,426 - MPMX19_03525 0.16 -1.8 945,426 - MPMX19_03525 0.16 -1.5 945,426 - MPMX19_03525 0.16 -0.1 945,426 - MPMX19_03525 0.16 +0.4 945,426 - MPMX19_03525 0.16 +0.6 945,426 - MPMX19_03525 0.16 +0.4 945,426 - MPMX19_03525 0.16 +1.3 945,426 - MPMX19_03525 0.16 +0.6 945,426 - MPMX19_03525 0.16 -0.3 945,702 - MPMX19_03525 0.77 -0.6 945,702 - MPMX19_03525 0.77 -1.1 945,752 + MPMX19_03525 0.88 -0.6 945,752 + MPMX19_03525 0.88 -0.4 945,752 + MPMX19_03525 0.88 +0.1 945,752 + MPMX19_03525 0.88 -0.8 945,752 + MPMX19_03525 0.88 -0.1 945,753 - MPMX19_03525 0.88 -0.6 945,753 - MPMX19_03525 0.88 -0.2 945,753 - MPMX19_03525 0.88 +0.1 945,753 - MPMX19_03525 0.88 -0.8 945,843 + -1.6 945,843 + -1.1 945,843 + -0.4 945,844 - -1.3 945,844 - -1.0 945,844 - +0.9 945,844 - +0.5 945,844 - +0.3 945,938 - MPMX19_03526 0.15 -0.1 945,938 - MPMX19_03526 0.15 +0.2 945,938 - MPMX19_03526 0.15 +1.7 946,018 + MPMX19_03526 0.24 +1.4 946,018 + MPMX19_03526 0.24 +0.2 946,018 + MPMX19_03526 0.24 -0.4 946,019 - MPMX19_03526 0.24 +0.4 946,019 - MPMX19_03526 0.24 -0.6 946,019 - MPMX19_03526 0.24 +0.5 946,039 + MPMX19_03526 0.26 +0.4 946,039 + MPMX19_03526 0.26 -0.3 946,039 + MPMX19_03526 0.26 +1.2 946,039 + MPMX19_03526 0.26 +0.3 946,040 - MPMX19_03526 0.26 -1.6 946,040 - MPMX19_03526 0.26 -0.1 946,040 - MPMX19_03526 0.26 -0.5 946,519 + MPMX19_03526 0.79 -0.4 946,519 + MPMX19_03526 0.79 -2.1 946,520 - MPMX19_03526 0.80 -0.3 946,520 - MPMX19_03526 0.80 -1.8 946,705 + +0.7 946,706 - -0.6 946,722 + -1.4 946,722 + -0.5 946,723 - -0.2 946,723 - +0.1 946,723 - -1.0 946,723 - -0.2 946,728 + -2.7 946,728 + +0.4 946,728 + +1.1 946,728 + -2.1 946,728 + -2.0 946,728 + -0.9 946,728 + -1.5 946,728 + -0.4 946,728 + -0.2 946,728 + +0.1 946,728 + -1.5 946,729 - -0.3 946,729 - +0.4 946,729 - -0.3 946,729 - +0.8 946,729 - -0.4 946,729 - -0.6 946,729 - -0.6 946,729 - +0.5 946,729 - +1.0 946,729 - -1.1 946,783 + -0.5 946,783 + -0.2 946,783 + +0.3 946,783 + -0.4 946,783 + -0.2 946,783 + -0.1 946,784 - +0.3 946,784 - -1.2
Or see this region's nucleotide sequence