Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03505

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03504 and MPMX19_03505 are separated by 71 nucleotidesMPMX19_03505 and MPMX19_03506 are separated by 43 nucleotidesMPMX19_03506 and MPMX19_03507 overlap by 4 nucleotidesMPMX19_03507 and MPMX19_03508 overlap by 4 nucleotides MPMX19_03504: MPMX19_03504 - Sulfur carrier protein FdhD, at 921,501 to 922,283 _03504 MPMX19_03505: MPMX19_03505 - putative formate transporter 1, at 922,355 to 923,263 _03505 MPMX19_03506: MPMX19_03506 - Hydrogenase 3 maturation protease, at 923,307 to 923,765 _03506 MPMX19_03507: MPMX19_03507 - hypothetical protein, at 923,762 to 924,229 _03507 MPMX19_03508: MPMX19_03508 - Formate hydrogenlyase subunit 7, at 924,226 to 925,029 _03508 Position (kb) 922 923 924Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 921.414 kb on - strandat 921.437 kb on + strandat 921.437 kb on + strandat 921.437 kb on + strandat 921.438 kb on - strandat 921.438 kb on - strandat 921.582 kb on + strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 921.583 kb on - strand, within MPMX19_03504at 922.248 kb on + strandat 922.248 kb on + strandat 922.249 kb on - strandat 922.249 kb on - strandat 922.249 kb on - strandat 922.249 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.333 kb on - strandat 922.437 kb on + strandat 922.438 kb on - strandat 922.438 kb on - strandat 922.438 kb on - strandat 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.449 kb on + strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.450 kb on - strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.584 kb on + strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.585 kb on - strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.602 kb on + strand, within MPMX19_03505at 922.603 kb on - strand, within MPMX19_03505at 922.698 kb on + strand, within MPMX19_03505at 922.709 kb on + strand, within MPMX19_03505at 922.846 kb on + strand, within MPMX19_03505at 922.846 kb on + strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.847 kb on - strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.848 kb on + strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 922.849 kb on - strand, within MPMX19_03505at 923.214 kb on + strandat 923.214 kb on + strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.215 kb on - strandat 923.324 kb on - strandat 923.324 kb on - strandat 923.751 kb on + strandat 923.752 kb on - strandat 923.752 kb on - strandat 923.787 kb on + strandat 923.787 kb on + strandat 923.787 kb on + strandat 923.788 kb on - strandat 923.788 kb on - strandat 923.788 kb on - strandat 924.078 kb on + strand, within MPMX19_03507at 924.078 kb on + strand, within MPMX19_03507at 924.079 kb on - strand, within MPMX19_03507at 924.079 kb on - strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.081 kb on + strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.082 kb on - strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.147 kb on + strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.148 kb on - strand, within MPMX19_03507at 924.216 kb on - strandat 924.216 kb on - strandat 924.216 kb on - strandat 924.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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921,414 - -0.8
921,437 + +1.9
921,437 + +0.8
921,437 + -0.5
921,438 - -0.4
921,438 - +0.4
921,582 + MPMX19_03504 0.10 +0.2
921,583 - MPMX19_03504 0.10 +1.1
921,583 - MPMX19_03504 0.10 -0.4
921,583 - MPMX19_03504 0.10 -1.3
921,583 - MPMX19_03504 0.10 +0.5
921,583 - MPMX19_03504 0.10 -0.1
921,583 - MPMX19_03504 0.10 -1.4
922,248 + -1.1
922,248 + -1.8
922,249 - -0.5
922,249 - +1.2
922,249 - -1.3
922,249 - +0.2
922,333 - +0.7
922,333 - -0.2
922,333 - -1.4
922,333 - -1.7
922,437 + -0.5
922,438 - -2.0
922,438 - -0.0
922,438 - -0.4
922,449 + MPMX19_03505 0.10 -0.4
922,449 + MPMX19_03505 0.10 -0.2
922,449 + MPMX19_03505 0.10 -1.9
922,449 + MPMX19_03505 0.10 -1.1
922,449 + MPMX19_03505 0.10 +0.6
922,449 + MPMX19_03505 0.10 -1.6
922,450 - MPMX19_03505 0.10 -0.7
922,450 - MPMX19_03505 0.10 -0.5
922,450 - MPMX19_03505 0.10 -0.6
922,450 - MPMX19_03505 0.10 -1.8
922,450 - MPMX19_03505 0.10 +0.1
922,450 - MPMX19_03505 0.10 +0.6
922,450 - MPMX19_03505 0.10 -0.6
922,450 - MPMX19_03505 0.10 -0.5
922,450 - MPMX19_03505 0.10 -1.7
922,450 - MPMX19_03505 0.10 -1.1
922,450 - MPMX19_03505 0.10 -0.7
922,450 - MPMX19_03505 0.10 -0.3
922,584 + MPMX19_03505 0.25 -1.2
922,584 + MPMX19_03505 0.25 -0.5
922,584 + MPMX19_03505 0.25 -0.8
922,584 + MPMX19_03505 0.25 -0.3
922,584 + MPMX19_03505 0.25 +0.1
922,584 + MPMX19_03505 0.25 -0.3
922,584 + MPMX19_03505 0.25 +0.8
922,584 + MPMX19_03505 0.25 -0.3
922,585 - MPMX19_03505 0.25 -1.2
922,585 - MPMX19_03505 0.25 -0.9
922,585 - MPMX19_03505 0.25 -0.7
922,602 + MPMX19_03505 0.27 +0.2
922,602 + MPMX19_03505 0.27 +0.3
922,602 + MPMX19_03505 0.27 -1.1
922,603 - MPMX19_03505 0.27 -1.7
922,698 + MPMX19_03505 0.38 -0.9
922,709 + MPMX19_03505 0.39 -0.8
922,846 + MPMX19_03505 0.54 +2.3
922,846 + MPMX19_03505 0.54 +0.1
922,847 - MPMX19_03505 0.54 -1.1
922,847 - MPMX19_03505 0.54 +1.1
922,847 - MPMX19_03505 0.54 +1.7
922,848 + MPMX19_03505 0.54 -2.1
922,848 + MPMX19_03505 0.54 +0.9
922,848 + MPMX19_03505 0.54 +0.8
922,848 + MPMX19_03505 0.54 -1.0
922,848 + MPMX19_03505 0.54 -1.4
922,848 + MPMX19_03505 0.54 -0.4
922,848 + MPMX19_03505 0.54 -0.3
922,848 + MPMX19_03505 0.54 -0.5
922,848 + MPMX19_03505 0.54 -0.9
922,848 + MPMX19_03505 0.54 -0.4
922,848 + MPMX19_03505 0.54 -0.9
922,848 + MPMX19_03505 0.54 +0.5
922,848 + MPMX19_03505 0.54 +1.5
922,848 + MPMX19_03505 0.54 -0.7
922,848 + MPMX19_03505 0.54 -1.7
922,848 + MPMX19_03505 0.54 +0.3
922,848 + MPMX19_03505 0.54 -1.4
922,849 - MPMX19_03505 0.54 -1.8
922,849 - MPMX19_03505 0.54 -0.1
922,849 - MPMX19_03505 0.54 -0.9
922,849 - MPMX19_03505 0.54 -1.1
922,849 - MPMX19_03505 0.54 -0.2
922,849 - MPMX19_03505 0.54 -2.8
922,849 - MPMX19_03505 0.54 -0.8
922,849 - MPMX19_03505 0.54 -0.7
922,849 - MPMX19_03505 0.54 -1.8
922,849 - MPMX19_03505 0.54 +0.6
922,849 - MPMX19_03505 0.54 -1.3
922,849 - MPMX19_03505 0.54 -0.6
922,849 - MPMX19_03505 0.54 -0.2
922,849 - MPMX19_03505 0.54 +1.3
922,849 - MPMX19_03505 0.54 -0.0
922,849 - MPMX19_03505 0.54 +0.2
922,849 - MPMX19_03505 0.54 -0.3
922,849 - MPMX19_03505 0.54 -0.9
922,849 - MPMX19_03505 0.54 +0.6
922,849 - MPMX19_03505 0.54 -0.9
922,849 - MPMX19_03505 0.54 -1.9
922,849 - MPMX19_03505 0.54 -1.0
922,849 - MPMX19_03505 0.54 -0.7
922,849 - MPMX19_03505 0.54 -0.5
923,214 + -1.1
923,214 + -0.7
923,215 - -0.1
923,215 - -2.2
923,215 - -0.9
923,215 - +0.1
923,324 - +0.3
923,324 - -1.4
923,751 + +0.5
923,752 - -0.7
923,752 - +0.6
923,787 + -0.6
923,787 + -2.6
923,787 + +0.1
923,788 - +0.1
923,788 - -0.9
923,788 - +0.7
924,078 + MPMX19_03507 0.68 -1.1
924,078 + MPMX19_03507 0.68 +0.9
924,079 - MPMX19_03507 0.68 -0.0
924,079 - MPMX19_03507 0.68 -0.4
924,081 + MPMX19_03507 0.68 -0.3
924,081 + MPMX19_03507 0.68 -1.1
924,081 + MPMX19_03507 0.68 -0.8
924,081 + MPMX19_03507 0.68 +0.3
924,082 - MPMX19_03507 0.68 +0.8
924,082 - MPMX19_03507 0.68 -0.3
924,082 - MPMX19_03507 0.68 -0.4
924,147 + MPMX19_03507 0.82 -0.7
924,147 + MPMX19_03507 0.82 -1.1
924,147 + MPMX19_03507 0.82 -1.2
924,147 + MPMX19_03507 0.82 -0.7
924,147 + MPMX19_03507 0.82 +0.7
924,147 + MPMX19_03507 0.82 -0.7
924,148 - MPMX19_03507 0.82 -2.1
924,148 - MPMX19_03507 0.82 -0.9
924,148 - MPMX19_03507 0.82 -0.4
924,148 - MPMX19_03507 0.82 +0.5
924,216 - +0.1
924,216 - -1.2
924,216 - +0.2
924,216 - -1.5

Or see this region's nucleotide sequence