Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03495 and MPMX19_03496 are separated by 9 nucleotides MPMX19_03496 and MPMX19_03497 are separated by 252 nucleotides
MPMX19_03495: MPMX19_03495 - Adaptive-response sensory-kinase SasA, at 910,849 to 912,963
_03495
MPMX19_03496: MPMX19_03496 - Protein FdhE, at 912,973 to 913,887
_03496
MPMX19_03497: MPMX19_03497 - Formate dehydrogenase-O major subunit, at 914,140 to 917,202
_03497
Position (kb)
912
913
914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 912.433 kb on + strand, within MPMX19_03495 at 912.433 kb on + strand, within MPMX19_03495 at 912.433 kb on + strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 912.434 kb on - strand, within MPMX19_03495 at 913.260 kb on + strand, within MPMX19_03496 at 913.260 kb on + strand, within MPMX19_03496 at 913.260 kb on + strand, within MPMX19_03496 at 913.260 kb on + strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.261 kb on - strand, within MPMX19_03496 at 913.283 kb on + strand, within MPMX19_03496 at 913.284 kb on - strand, within MPMX19_03496 at 913.860 kb on + strand at 913.936 kb on + strand at 913.936 kb on + strand at 913.936 kb on + strand at 913.937 kb on - strand at 913.937 kb on - strand at 913.991 kb on + strand at 913.992 kb on - strand at 913.992 kb on - strand at 913.992 kb on - strand at 914.041 kb on + strand at 914.293 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.323 kb on + strand at 914.324 kb on - strand at 914.324 kb on - strand at 914.324 kb on - strand at 914.324 kb on - strand at 914.371 kb on - strand at 914.467 kb on + strand, within MPMX19_03497 at 914.467 kb on + strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.468 kb on - strand, within MPMX19_03497 at 914.547 kb on + strand, within MPMX19_03497 at 914.547 kb on + strand, within MPMX19_03497 at 914.547 kb on + strand, within MPMX19_03497
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 912,433 + MPMX19_03495 0.75 -2.2 912,433 + MPMX19_03495 0.75 -1.7 912,433 + MPMX19_03495 0.75 +0.1 912,434 - MPMX19_03495 0.75 -0.1 912,434 - MPMX19_03495 0.75 -1.2 912,434 - MPMX19_03495 0.75 -0.2 912,434 - MPMX19_03495 0.75 +0.2 912,434 - MPMX19_03495 0.75 -1.4 912,434 - MPMX19_03495 0.75 -0.8 913,260 + MPMX19_03496 0.31 -1.7 913,260 + MPMX19_03496 0.31 -0.2 913,260 + MPMX19_03496 0.31 +1.7 913,260 + MPMX19_03496 0.31 +0.1 913,261 - MPMX19_03496 0.31 -0.4 913,261 - MPMX19_03496 0.31 -0.1 913,261 - MPMX19_03496 0.31 -1.0 913,261 - MPMX19_03496 0.31 -0.7 913,283 + MPMX19_03496 0.34 +0.1 913,284 - MPMX19_03496 0.34 -0.2 913,860 + +0.1 913,936 + +0.5 913,936 + -1.2 913,936 + +0.6 913,937 - -0.8 913,937 - -1.5 913,991 + +0.3 913,992 - -0.6 913,992 - -0.1 913,992 - -0.5 914,041 + +1.7 914,293 + -1.4 914,323 + +0.1 914,323 + -0.7 914,323 + -0.1 914,323 + +1.1 914,323 + -2.2 914,323 + -0.2 914,323 + +0.9 914,324 - -0.4 914,324 - +1.5 914,324 - +0.2 914,324 - -2.3 914,371 - -1.0 914,467 + MPMX19_03497 0.11 +1.5 914,467 + MPMX19_03497 0.11 -1.1 914,468 - MPMX19_03497 0.11 -2.9 914,468 - MPMX19_03497 0.11 +0.3 914,468 - MPMX19_03497 0.11 -0.5 914,468 - MPMX19_03497 0.11 -0.7 914,547 + MPMX19_03497 0.13 -1.1 914,547 + MPMX19_03497 0.13 +1.9 914,547 + MPMX19_03497 0.13 -0.1
Or see this region's nucleotide sequence