Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03493

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03492 and MPMX19_03493 are separated by 285 nucleotidesMPMX19_03493 and MPMX19_03494 are separated by 333 nucleotides MPMX19_03492: MPMX19_03492 - 3'-5' exonuclease DinG, at 906,194 to 907,132 _03492 MPMX19_03493: MPMX19_03493 - hypothetical protein, at 907,418 to 909,121 _03493 MPMX19_03494: MPMX19_03494 - Regulatory protein AtoC, at 909,455 to 910,861 _03494 Position (kb) 907 908 909 910Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 906.879 kb on - strand, within MPMX19_03492at 906.879 kb on - strand, within MPMX19_03492at 906.879 kb on - strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 907.055 kb on + strandat 907.055 kb on + strandat 907.055 kb on + strandat 907.056 kb on - strandat 907.056 kb on - strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.368 kb on + strandat 907.368 kb on + strandat 907.369 kb on - strandat 907.369 kb on - strandat 908.320 kb on + strand, within MPMX19_03493at 908.320 kb on + strand, within MPMX19_03493at 908.320 kb on + strand, within MPMX19_03493at 908.321 kb on - strand, within MPMX19_03493at 908.321 kb on - strand, within MPMX19_03493at 908.321 kb on - strand, within MPMX19_03493at 908.321 kb on - strand, within MPMX19_03493at 908.532 kb on + strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.533 kb on - strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.694 kb on + strand, within MPMX19_03493at 908.695 kb on - strand, within MPMX19_03493at 908.695 kb on - strand, within MPMX19_03493at 908.736 kb on + strand, within MPMX19_03493at 908.737 kb on - strand, within MPMX19_03493at 908.793 kb on + strand, within MPMX19_03493at 908.794 kb on - strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.847 kb on + strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 908.848 kb on - strand, within MPMX19_03493at 909.126 kb on + strandat 909.126 kb on + strandat 909.126 kb on + strandat 909.127 kb on - strandat 909.127 kb on - strandat 909.127 kb on - strandat 909.131 kb on - strandat 909.225 kb on + strandat 909.227 kb on + strandat 909.227 kb on + strandat 909.362 kb on - strandat 909.362 kb on - strandat 909.380 kb on - strandat 909.380 kb on - strandat 909.423 kb on + strandat 909.424 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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906,879 - MPMX19_03492 0.73 -0.7
906,879 - MPMX19_03492 0.73 -0.6
906,879 - MPMX19_03492 0.73 -1.1
906,989 + MPMX19_03492 0.85 -1.1
906,989 + MPMX19_03492 0.85 +0.3
906,989 + MPMX19_03492 0.85 -0.4
906,989 + MPMX19_03492 0.85 +0.1
906,989 + MPMX19_03492 0.85 +0.3
906,989 + MPMX19_03492 0.85 +0.2
906,989 + MPMX19_03492 0.85 +0.3
906,990 - MPMX19_03492 0.85 -0.4
906,990 - MPMX19_03492 0.85 +0.3
906,990 - MPMX19_03492 0.85 -0.2
906,990 - MPMX19_03492 0.85 +0.3
907,055 + +0.3
907,055 + +0.3
907,055 + +0.3
907,056 - -0.1
907,056 - -2.0
907,185 + +0.8
907,185 + -0.7
907,185 + -0.2
907,185 + +0.3
907,185 + +0.3
907,185 + -1.1
907,185 + -0.4
907,185 + +0.4
907,185 + +0.5
907,186 - -0.7
907,186 - +0.3
907,186 - +0.0
907,186 - -1.2
907,186 - -0.2
907,186 - +0.5
907,186 - -0.1
907,186 - -1.1
907,368 + +0.5
907,368 + +0.1
907,369 - -0.1
907,369 - -1.1
908,320 + MPMX19_03493 0.53 +0.9
908,320 + MPMX19_03493 0.53 -0.3
908,320 + MPMX19_03493 0.53 -0.1
908,321 - MPMX19_03493 0.53 +0.3
908,321 - MPMX19_03493 0.53 +0.8
908,321 - MPMX19_03493 0.53 +0.6
908,321 - MPMX19_03493 0.53 +0.2
908,532 + MPMX19_03493 0.65 -1.5
908,533 - MPMX19_03493 0.65 -1.7
908,533 - MPMX19_03493 0.65 +1.3
908,533 - MPMX19_03493 0.65 -0.5
908,533 - MPMX19_03493 0.65 -0.5
908,533 - MPMX19_03493 0.65 -1.8
908,533 - MPMX19_03493 0.65 -0.4
908,694 + MPMX19_03493 0.75 -1.4
908,694 + MPMX19_03493 0.75 +1.9
908,694 + MPMX19_03493 0.75 +0.3
908,694 + MPMX19_03493 0.75 +0.1
908,695 - MPMX19_03493 0.75 -0.7
908,695 - MPMX19_03493 0.75 -0.7
908,736 + MPMX19_03493 0.77 -1.2
908,737 - MPMX19_03493 0.77 +0.1
908,793 + MPMX19_03493 0.81 -1.4
908,794 - MPMX19_03493 0.81 +1.3
908,847 + MPMX19_03493 0.84 -0.9
908,847 + MPMX19_03493 0.84 +0.4
908,847 + MPMX19_03493 0.84 +0.2
908,847 + MPMX19_03493 0.84 +0.7
908,847 + MPMX19_03493 0.84 -0.2
908,848 - MPMX19_03493 0.84 -1.9
908,848 - MPMX19_03493 0.84 +0.6
908,848 - MPMX19_03493 0.84 -2.9
908,848 - MPMX19_03493 0.84 -1.5
908,848 - MPMX19_03493 0.84 -1.0
909,126 + +1.3
909,126 + -0.1
909,126 + -0.4
909,127 - -0.5
909,127 - -0.7
909,127 - +1.1
909,131 - -0.2
909,225 + -0.5
909,227 + -0.4
909,227 + +1.2
909,362 - -1.4
909,362 - -0.1
909,380 - +0.7
909,380 - -0.6
909,423 + -1.0
909,424 - +0.1

Or see this region's nucleotide sequence