Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03490

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03489 and MPMX19_03490 are separated by 94 nucleotidesMPMX19_03490 and MPMX19_03491 are separated by 64 nucleotides MPMX19_03489: MPMX19_03489 - Spermidine/putrescine import ATP-binding protein PotA, at 902,114 to 903,241 _03489 MPMX19_03490: MPMX19_03490 - hypothetical protein, at 903,336 to 904,418 _03490 MPMX19_03491: MPMX19_03491 - putative FAD-linked oxidoreductase, at 904,483 to 905,904 _03491 Position (kb) 903 904 905Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 902.571 kb on + strand, within MPMX19_03489at 902.571 kb on + strand, within MPMX19_03489at 902.571 kb on + strand, within MPMX19_03489at 902.572 kb on - strand, within MPMX19_03489at 902.572 kb on - strand, within MPMX19_03489at 902.572 kb on - strand, within MPMX19_03489at 902.670 kb on + strand, within MPMX19_03489at 902.671 kb on - strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.787 kb on + strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.788 kb on - strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.985 kb on + strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 902.986 kb on - strand, within MPMX19_03489at 903.018 kb on + strand, within MPMX19_03489at 903.018 kb on + strand, within MPMX19_03489at 903.018 kb on + strand, within MPMX19_03489at 903.019 kb on - strand, within MPMX19_03489at 903.019 kb on - strand, within MPMX19_03489at 903.019 kb on - strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.030 kb on + strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.031 kb on - strand, within MPMX19_03489at 903.358 kb on + strandat 903.358 kb on + strandat 903.359 kb on - strandat 903.359 kb on - strandat 903.359 kb on - strandat 903.394 kb on + strandat 903.394 kb on + strandat 903.395 kb on - strandat 903.395 kb on - strandat 903.395 kb on - strandat 903.511 kb on + strand, within MPMX19_03490at 903.511 kb on + strand, within MPMX19_03490at 903.511 kb on + strand, within MPMX19_03490at 903.512 kb on - strand, within MPMX19_03490at 903.512 kb on - strand, within MPMX19_03490at 903.817 kb on + strand, within MPMX19_03490at 903.817 kb on + strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.818 kb on - strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.919 kb on + strand, within MPMX19_03490at 903.920 kb on - strand, within MPMX19_03490at 903.920 kb on - strand, within MPMX19_03490at 903.973 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.991 kb on + strand, within MPMX19_03490at 903.992 kb on - strand, within MPMX19_03490at 904.012 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.024 kb on + strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.025 kb on - strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.147 kb on + strand, within MPMX19_03490at 904.148 kb on - strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.246 kb on + strand, within MPMX19_03490at 904.247 kb on - strand, within MPMX19_03490at 904.247 kb on - strand, within MPMX19_03490at 904.247 kb on - strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.261 kb on + strand, within MPMX19_03490at 904.262 kb on - strand, within MPMX19_03490at 904.262 kb on - strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.273 kb on + strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.274 kb on - strand, within MPMX19_03490at 904.484 kb on + strandat 904.580 kb on + strandat 904.580 kb on + strandat 904.581 kb on - strandat 905.336 kb on + strand, within MPMX19_03491at 905.363 kb on + strand, within MPMX19_03491at 905.363 kb on + strand, within MPMX19_03491

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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902,571 + MPMX19_03489 0.41 -0.2
902,571 + MPMX19_03489 0.41 +1.2
902,571 + MPMX19_03489 0.41 -2.0
902,572 - MPMX19_03489 0.41 -1.3
902,572 - MPMX19_03489 0.41 -0.2
902,572 - MPMX19_03489 0.41 -1.2
902,670 + MPMX19_03489 0.49 -0.3
902,671 - MPMX19_03489 0.49 -0.6
902,787 + MPMX19_03489 0.60 +0.7
902,787 + MPMX19_03489 0.60 -1.7
902,787 + MPMX19_03489 0.60 +1.3
902,787 + MPMX19_03489 0.60 +1.3
902,787 + MPMX19_03489 0.60 -0.2
902,788 - MPMX19_03489 0.60 +1.6
902,788 - MPMX19_03489 0.60 -0.4
902,788 - MPMX19_03489 0.60 +1.2
902,788 - MPMX19_03489 0.60 -1.7
902,788 - MPMX19_03489 0.60 -0.4
902,788 - MPMX19_03489 0.60 -0.9
902,985 + MPMX19_03489 0.77 -0.3
902,985 + MPMX19_03489 0.77 -0.1
902,985 + MPMX19_03489 0.77 -1.1
902,985 + MPMX19_03489 0.77 +0.2
902,985 + MPMX19_03489 0.77 -0.2
902,985 + MPMX19_03489 0.77 +1.2
902,985 + MPMX19_03489 0.77 +0.3
902,986 - MPMX19_03489 0.77 -2.2
902,986 - MPMX19_03489 0.77 +1.1
902,986 - MPMX19_03489 0.77 -0.7
902,986 - MPMX19_03489 0.77 -1.5
902,986 - MPMX19_03489 0.77 +1.5
902,986 - MPMX19_03489 0.77 -1.3
902,986 - MPMX19_03489 0.77 -0.8
902,986 - MPMX19_03489 0.77 -1.1
902,986 - MPMX19_03489 0.77 -0.2
902,986 - MPMX19_03489 0.77 -0.5
903,018 + MPMX19_03489 0.80 +0.5
903,018 + MPMX19_03489 0.80 -0.1
903,018 + MPMX19_03489 0.80 -1.1
903,019 - MPMX19_03489 0.80 +0.6
903,019 - MPMX19_03489 0.80 -0.7
903,019 - MPMX19_03489 0.80 +0.7
903,030 + MPMX19_03489 0.81 +0.2
903,030 + MPMX19_03489 0.81 +0.7
903,030 + MPMX19_03489 0.81 +0.6
903,030 + MPMX19_03489 0.81 +0.5
903,031 - MPMX19_03489 0.81 +0.3
903,031 - MPMX19_03489 0.81 +0.3
903,031 - MPMX19_03489 0.81 -0.2
903,031 - MPMX19_03489 0.81 -1.2
903,358 + +0.1
903,358 + -0.4
903,359 - -0.3
903,359 - -0.1
903,359 - -1.5
903,394 + +0.1
903,394 + +0.6
903,395 - +0.6
903,395 - -0.3
903,395 - -0.2
903,511 + MPMX19_03490 0.16 -1.1
903,511 + MPMX19_03490 0.16 -0.6
903,511 + MPMX19_03490 0.16 +1.3
903,512 - MPMX19_03490 0.16 -0.2
903,512 - MPMX19_03490 0.16 -1.0
903,817 + MPMX19_03490 0.44 -1.8
903,817 + MPMX19_03490 0.44 -1.7
903,818 - MPMX19_03490 0.45 -0.3
903,818 - MPMX19_03490 0.45 +0.1
903,818 - MPMX19_03490 0.45 -2.0
903,818 - MPMX19_03490 0.45 -1.5
903,919 + MPMX19_03490 0.54 -0.7
903,919 + MPMX19_03490 0.54 -1.5
903,919 + MPMX19_03490 0.54 -1.1
903,919 + MPMX19_03490 0.54 -0.5
903,919 + MPMX19_03490 0.54 -1.2
903,920 - MPMX19_03490 0.54 -2.3
903,920 - MPMX19_03490 0.54 +0.4
903,973 + MPMX19_03490 0.59 -0.5
903,991 + MPMX19_03490 0.60 -0.5
903,991 + MPMX19_03490 0.60 +0.5
903,991 + MPMX19_03490 0.60 -0.1
903,992 - MPMX19_03490 0.61 -0.5
904,012 + MPMX19_03490 0.62 -0.4
904,024 + MPMX19_03490 0.64 -0.3
904,024 + MPMX19_03490 0.64 -0.2
904,024 + MPMX19_03490 0.64 -0.7
904,024 + MPMX19_03490 0.64 -2.2
904,024 + MPMX19_03490 0.64 -1.8
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 -0.7
904,024 + MPMX19_03490 0.64 -1.2
904,024 + MPMX19_03490 0.64 -1.5
904,024 + MPMX19_03490 0.64 -0.4
904,024 + MPMX19_03490 0.64 -0.9
904,024 + MPMX19_03490 0.64 -0.4
904,024 + MPMX19_03490 0.64 -0.7
904,024 + MPMX19_03490 0.64 +0.7
904,024 + MPMX19_03490 0.64 -1.1
904,024 + MPMX19_03490 0.64 -0.1
904,024 + MPMX19_03490 0.64 -0.3
904,024 + MPMX19_03490 0.64 +0.5
904,024 + MPMX19_03490 0.64 -0.6
904,024 + MPMX19_03490 0.64 +0.0
904,024 + MPMX19_03490 0.64 -1.2
904,025 - MPMX19_03490 0.64 -1.8
904,025 - MPMX19_03490 0.64 -0.8
904,025 - MPMX19_03490 0.64 -0.2
904,025 - MPMX19_03490 0.64 -1.0
904,025 - MPMX19_03490 0.64 +0.3
904,025 - MPMX19_03490 0.64 -0.5
904,025 - MPMX19_03490 0.64 +0.4
904,025 - MPMX19_03490 0.64 -0.4
904,025 - MPMX19_03490 0.64 -0.8
904,025 - MPMX19_03490 0.64 +0.7
904,025 - MPMX19_03490 0.64 -0.4
904,025 - MPMX19_03490 0.64 -0.2
904,025 - MPMX19_03490 0.64 +0.1
904,025 - MPMX19_03490 0.64 -1.4
904,025 - MPMX19_03490 0.64 -0.5
904,025 - MPMX19_03490 0.64 +0.9
904,025 - MPMX19_03490 0.64 +0.3
904,025 - MPMX19_03490 0.64 +0.1
904,147 + MPMX19_03490 0.75 +0.3
904,147 + MPMX19_03490 0.75 +0.5
904,147 + MPMX19_03490 0.75 +0.2
904,147 + MPMX19_03490 0.75 -1.4
904,147 + MPMX19_03490 0.75 -1.2
904,147 + MPMX19_03490 0.75 -1.5
904,148 - MPMX19_03490 0.75 +0.9
904,246 + MPMX19_03490 0.84 +0.1
904,246 + MPMX19_03490 0.84 -1.3
904,246 + MPMX19_03490 0.84 -0.1
904,246 + MPMX19_03490 0.84 +0.7
904,246 + MPMX19_03490 0.84 +0.0
904,246 + MPMX19_03490 0.84 +0.1
904,246 + MPMX19_03490 0.84 +0.5
904,246 + MPMX19_03490 0.84 -0.6
904,246 + MPMX19_03490 0.84 +2.2
904,247 - MPMX19_03490 0.84 -2.0
904,247 - MPMX19_03490 0.84 -0.1
904,247 - MPMX19_03490 0.84 -0.8
904,261 + MPMX19_03490 0.85 +0.2
904,261 + MPMX19_03490 0.85 +0.7
904,261 + MPMX19_03490 0.85 +0.3
904,261 + MPMX19_03490 0.85 +1.3
904,262 - MPMX19_03490 0.86 +0.1
904,262 - MPMX19_03490 0.86 -0.4
904,273 + MPMX19_03490 0.87 +0.0
904,273 + MPMX19_03490 0.87 +0.6
904,273 + MPMX19_03490 0.87 +0.1
904,273 + MPMX19_03490 0.87 +0.5
904,273 + MPMX19_03490 0.87 -2.8
904,274 - MPMX19_03490 0.87 -0.7
904,274 - MPMX19_03490 0.87 +0.1
904,274 - MPMX19_03490 0.87 -1.2
904,274 - MPMX19_03490 0.87 +0.1
904,274 - MPMX19_03490 0.87 +0.7
904,274 - MPMX19_03490 0.87 -0.9
904,274 - MPMX19_03490 0.87 -1.2
904,484 + -0.7
904,580 + -2.2
904,580 + -2.0
904,581 - -0.1
905,336 + MPMX19_03491 0.60 -0.4
905,363 + MPMX19_03491 0.62 -0.4
905,363 + MPMX19_03491 0.62 +0.3

Or see this region's nucleotide sequence