Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03487

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03486 and MPMX19_03487 are separated by 172 nucleotidesMPMX19_03487 and MPMX19_03488 are separated by 49 nucleotides MPMX19_03486: MPMX19_03486 - Pca regulon regulatory protein, at 898,313 to 899,170 _03486 MPMX19_03487: MPMX19_03487 - 4-hydroxy-tetrahydrodipicolinate synthase, at 899,343 to 900,275 _03487 MPMX19_03488: MPMX19_03488 - hypothetical protein, at 900,325 to 902,097 _03488 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.521 kb on + strand, within MPMX19_03486at 898.522 kb on - strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.674 kb on + strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.675 kb on - strand, within MPMX19_03486at 898.677 kb on + strand, within MPMX19_03486at 898.677 kb on + strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.678 kb on - strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.746 kb on + strand, within MPMX19_03486at 898.747 kb on - strand, within MPMX19_03486at 898.747 kb on - strand, within MPMX19_03486at 898.818 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.857 kb on + strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.858 kb on - strand, within MPMX19_03486at 898.863 kb on + strand, within MPMX19_03486at 898.863 kb on + strand, within MPMX19_03486at 898.864 kb on - strand, within MPMX19_03486at 898.864 kb on - strand, within MPMX19_03486at 898.896 kb on + strand, within MPMX19_03486at 898.896 kb on + strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.897 kb on - strand, within MPMX19_03486at 898.926 kb on + strand, within MPMX19_03486at 898.926 kb on + strand, within MPMX19_03486at 898.947 kb on + strand, within MPMX19_03486at 898.947 kb on + strand, within MPMX19_03486at 898.948 kb on - strand, within MPMX19_03486at 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.298 kb on + strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.299 kb on - strandat 899.374 kb on + strandat 899.374 kb on + strandat 899.374 kb on + strandat 899.375 kb on - strandat 899.375 kb on - strandat 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.746 kb on + strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.747 kb on - strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.851 kb on + strand, within MPMX19_03487at 899.852 kb on - strand, within MPMX19_03487at 899.852 kb on - strand, within MPMX19_03487at 899.884 kb on + strand, within MPMX19_03487at 899.885 kb on - strand, within MPMX19_03487at 899.896 kb on + strand, within MPMX19_03487at 899.897 kb on - strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.929 kb on + strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.930 kb on - strand, within MPMX19_03487at 899.932 kb on + strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 899.933 kb on - strand, within MPMX19_03487at 900.002 kb on - strand, within MPMX19_03487at 900.002 kb on - strand, within MPMX19_03487at 900.002 kb on - strand, within MPMX19_03487at 900.004 kb on + strand, within MPMX19_03487at 900.119 kb on - strand, within MPMX19_03487at 900.365 kb on + strandat 900.365 kb on + strandat 900.365 kb on + strandat 900.365 kb on + strandat 900.365 kb on + strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.366 kb on - strandat 900.490 kb on + strandat 900.491 kb on - strandat 900.491 kb on - strandat 900.491 kb on - strandat 900.491 kb on - strandat 900.641 kb on + strand, within MPMX19_03488at 900.641 kb on + strand, within MPMX19_03488at 900.641 kb on + strand, within MPMX19_03488at 900.641 kb on + strand, within MPMX19_03488at 900.641 kb on + strand, within MPMX19_03488at 900.642 kb on - strand, within MPMX19_03488at 900.642 kb on - strand, within MPMX19_03488at 900.642 kb on - strand, within MPMX19_03488at 900.642 kb on - strand, within MPMX19_03488at 900.642 kb on - strand, within MPMX19_03488at 900.677 kb on + strand, within MPMX19_03488at 900.677 kb on + strand, within MPMX19_03488at 900.677 kb on + strand, within MPMX19_03488at 900.677 kb on + strand, within MPMX19_03488at 900.677 kb on + strand, within MPMX19_03488at 900.677 kb on + strand, within MPMX19_03488at 900.678 kb on - strand, within MPMX19_03488at 900.678 kb on - strand, within MPMX19_03488at 900.678 kb on - strand, within MPMX19_03488at 900.678 kb on - strand, within MPMX19_03488at 900.678 kb on - strand, within MPMX19_03488at 900.678 kb on - strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.752 kb on + strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.753 kb on - strand, within MPMX19_03488at 900.962 kb on + strand, within MPMX19_03488at 900.962 kb on + strand, within MPMX19_03488at 900.962 kb on + strand, within MPMX19_03488at 901.265 kb on + strand, within MPMX19_03488at 901.265 kb on + strand, within MPMX19_03488at 901.265 kb on + strand, within MPMX19_03488at 901.266 kb on - strand, within MPMX19_03488at 901.266 kb on - strand, within MPMX19_03488

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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898,521 + MPMX19_03486 0.24 +0.4
898,521 + MPMX19_03486 0.24 -1.8
898,521 + MPMX19_03486 0.24 +0.9
898,521 + MPMX19_03486 0.24 +0.2
898,522 - MPMX19_03486 0.24 -1.9
898,674 + MPMX19_03486 0.42 -0.4
898,674 + MPMX19_03486 0.42 +0.3
898,674 + MPMX19_03486 0.42 -1.2
898,674 + MPMX19_03486 0.42 -1.5
898,675 - MPMX19_03486 0.42 -0.9
898,675 - MPMX19_03486 0.42 +0.2
898,675 - MPMX19_03486 0.42 +0.9
898,675 - MPMX19_03486 0.42 -1.1
898,675 - MPMX19_03486 0.42 -0.2
898,677 + MPMX19_03486 0.42 -1.1
898,677 + MPMX19_03486 0.42 +0.4
898,678 - MPMX19_03486 0.43 -0.3
898,678 - MPMX19_03486 0.43 -0.3
898,678 - MPMX19_03486 0.43 -0.9
898,746 + MPMX19_03486 0.50 -0.5
898,746 + MPMX19_03486 0.50 -0.0
898,746 + MPMX19_03486 0.50 +1.0
898,746 + MPMX19_03486 0.50 -0.7
898,746 + MPMX19_03486 0.50 -1.2
898,746 + MPMX19_03486 0.50 +0.5
898,747 - MPMX19_03486 0.51 -0.3
898,747 - MPMX19_03486 0.51 -0.4
898,818 + MPMX19_03486 0.59 +0.1
898,857 + MPMX19_03486 0.63 -0.4
898,857 + MPMX19_03486 0.63 +0.5
898,857 + MPMX19_03486 0.63 +0.2
898,857 + MPMX19_03486 0.63 +0.2
898,857 + MPMX19_03486 0.63 +0.5
898,857 + MPMX19_03486 0.63 -0.5
898,857 + MPMX19_03486 0.63 +0.9
898,858 - MPMX19_03486 0.64 -0.8
898,858 - MPMX19_03486 0.64 -2.1
898,858 - MPMX19_03486 0.64 +0.5
898,858 - MPMX19_03486 0.64 +0.2
898,858 - MPMX19_03486 0.64 -0.7
898,858 - MPMX19_03486 0.64 +0.6
898,858 - MPMX19_03486 0.64 -1.4
898,858 - MPMX19_03486 0.64 -0.6
898,863 + MPMX19_03486 0.64 -0.7
898,863 + MPMX19_03486 0.64 -1.8
898,864 - MPMX19_03486 0.64 -1.2
898,864 - MPMX19_03486 0.64 -1.5
898,896 + MPMX19_03486 0.68 +0.8
898,896 + MPMX19_03486 0.68 -0.3
898,897 - MPMX19_03486 0.68 +1.1
898,897 - MPMX19_03486 0.68 -0.5
898,897 - MPMX19_03486 0.68 -0.8
898,926 + MPMX19_03486 0.71 +0.8
898,926 + MPMX19_03486 0.71 -1.4
898,947 + MPMX19_03486 0.74 +2.3
898,947 + MPMX19_03486 0.74 -1.2
898,948 - MPMX19_03486 0.74 -1.5
899,298 + -0.9
899,298 + -0.9
899,298 + -0.1
899,298 + -0.9
899,298 + +0.9
899,298 + +0.1
899,298 + -0.9
899,298 + -0.1
899,298 + -1.2
899,298 + +0.3
899,299 - +0.8
899,299 - +0.2
899,299 - -0.4
899,299 - +0.3
899,299 - +0.1
899,299 - +0.2
899,299 - -0.2
899,299 - -0.7
899,299 - -0.1
899,299 - +0.3
899,374 + -0.7
899,374 + +1.9
899,374 + -0.7
899,375 - -1.2
899,375 - -0.6
899,746 + MPMX19_03487 0.43 -0.5
899,746 + MPMX19_03487 0.43 -0.1
899,746 + MPMX19_03487 0.43 -1.7
899,746 + MPMX19_03487 0.43 -1.5
899,746 + MPMX19_03487 0.43 -0.5
899,746 + MPMX19_03487 0.43 +0.3
899,746 + MPMX19_03487 0.43 -2.3
899,746 + MPMX19_03487 0.43 -1.1
899,746 + MPMX19_03487 0.43 -2.5
899,746 + MPMX19_03487 0.43 -1.4
899,746 + MPMX19_03487 0.43 -2.0
899,746 + MPMX19_03487 0.43 +0.6
899,747 - MPMX19_03487 0.43 +0.2
899,747 - MPMX19_03487 0.43 -0.2
899,747 - MPMX19_03487 0.43 +1.1
899,747 - MPMX19_03487 0.43 -0.4
899,747 - MPMX19_03487 0.43 -0.7
899,747 - MPMX19_03487 0.43 -1.4
899,747 - MPMX19_03487 0.43 +0.3
899,747 - MPMX19_03487 0.43 -1.3
899,747 - MPMX19_03487 0.43 -0.1
899,747 - MPMX19_03487 0.43 +0.7
899,851 + MPMX19_03487 0.54 -0.8
899,851 + MPMX19_03487 0.54 -0.2
899,851 + MPMX19_03487 0.54 -1.2
899,851 + MPMX19_03487 0.54 -0.4
899,851 + MPMX19_03487 0.54 -0.7
899,852 - MPMX19_03487 0.55 -0.5
899,852 - MPMX19_03487 0.55 -0.2
899,884 + MPMX19_03487 0.58 -1.1
899,885 - MPMX19_03487 0.58 -0.2
899,896 + MPMX19_03487 0.59 -0.2
899,897 - MPMX19_03487 0.59 +1.4
899,929 + MPMX19_03487 0.63 +0.2
899,929 + MPMX19_03487 0.63 +0.7
899,929 + MPMX19_03487 0.63 +0.2
899,929 + MPMX19_03487 0.63 -0.1
899,929 + MPMX19_03487 0.63 +0.3
899,929 + MPMX19_03487 0.63 +2.7
899,929 + MPMX19_03487 0.63 -0.7
899,929 + MPMX19_03487 0.63 -1.6
899,929 + MPMX19_03487 0.63 +0.1
899,929 + MPMX19_03487 0.63 +0.5
899,929 + MPMX19_03487 0.63 -0.5
899,929 + MPMX19_03487 0.63 -1.8
899,930 - MPMX19_03487 0.63 -0.8
899,930 - MPMX19_03487 0.63 +0.3
899,930 - MPMX19_03487 0.63 +0.5
899,930 - MPMX19_03487 0.63 +0.9
899,930 - MPMX19_03487 0.63 -0.2
899,930 - MPMX19_03487 0.63 +1.1
899,930 - MPMX19_03487 0.63 +0.8
899,930 - MPMX19_03487 0.63 +0.5
899,930 - MPMX19_03487 0.63 -2.1
899,932 + MPMX19_03487 0.63 -0.9
899,933 - MPMX19_03487 0.63 -0.1
899,933 - MPMX19_03487 0.63 -2.0
899,933 - MPMX19_03487 0.63 -0.1
899,933 - MPMX19_03487 0.63 -0.2
899,933 - MPMX19_03487 0.63 -0.1
900,002 - MPMX19_03487 0.71 -0.2
900,002 - MPMX19_03487 0.71 +0.4
900,002 - MPMX19_03487 0.71 -1.0
900,004 + MPMX19_03487 0.71 -0.2
900,119 - MPMX19_03487 0.83 -1.1
900,365 + -0.2
900,365 + -2.0
900,365 + +0.3
900,365 + -0.1
900,365 + +0.1
900,366 - +2.3
900,366 - +0.1
900,366 - -0.7
900,366 - +0.6
900,366 - -0.6
900,366 - -0.6
900,366 - +0.3
900,366 - -0.2
900,490 + -0.3
900,491 - -0.1
900,491 - +0.8
900,491 - -0.1
900,491 - -0.5
900,641 + MPMX19_03488 0.18 -0.1
900,641 + MPMX19_03488 0.18 +0.1
900,641 + MPMX19_03488 0.18 +0.4
900,641 + MPMX19_03488 0.18 +0.1
900,641 + MPMX19_03488 0.18 -1.3
900,642 - MPMX19_03488 0.18 +0.9
900,642 - MPMX19_03488 0.18 -1.1
900,642 - MPMX19_03488 0.18 +0.3
900,642 - MPMX19_03488 0.18 -0.4
900,642 - MPMX19_03488 0.18 -0.5
900,677 + MPMX19_03488 0.20 -0.9
900,677 + MPMX19_03488 0.20 -1.5
900,677 + MPMX19_03488 0.20 -1.4
900,677 + MPMX19_03488 0.20 +0.1
900,677 + MPMX19_03488 0.20 +0.3
900,677 + MPMX19_03488 0.20 +1.5
900,678 - MPMX19_03488 0.20 -1.2
900,678 - MPMX19_03488 0.20 -0.4
900,678 - MPMX19_03488 0.20 -0.9
900,678 - MPMX19_03488 0.20 -0.9
900,678 - MPMX19_03488 0.20 -0.4
900,678 - MPMX19_03488 0.20 -1.2
900,752 + MPMX19_03488 0.24 -0.9
900,752 + MPMX19_03488 0.24 -0.7
900,752 + MPMX19_03488 0.24 -0.9
900,752 + MPMX19_03488 0.24 -1.4
900,752 + MPMX19_03488 0.24 -0.6
900,752 + MPMX19_03488 0.24 +0.3
900,752 + MPMX19_03488 0.24 +0.1
900,752 + MPMX19_03488 0.24 -0.7
900,752 + MPMX19_03488 0.24 +0.9
900,752 + MPMX19_03488 0.24 -0.8
900,752 + MPMX19_03488 0.24 -0.9
900,752 + MPMX19_03488 0.24 -0.9
900,752 + MPMX19_03488 0.24 +0.8
900,753 - MPMX19_03488 0.24 -1.0
900,753 - MPMX19_03488 0.24 +0.5
900,753 - MPMX19_03488 0.24 -1.1
900,753 - MPMX19_03488 0.24 +0.2
900,753 - MPMX19_03488 0.24 -0.4
900,753 - MPMX19_03488 0.24 -0.7
900,753 - MPMX19_03488 0.24 -0.7
900,753 - MPMX19_03488 0.24 +0.5
900,962 + MPMX19_03488 0.36 -0.7
900,962 + MPMX19_03488 0.36 +1.3
900,962 + MPMX19_03488 0.36 -1.4
901,265 + MPMX19_03488 0.53 -0.6
901,265 + MPMX19_03488 0.53 -0.1
901,265 + MPMX19_03488 0.53 +0.7
901,266 - MPMX19_03488 0.53 -0.7
901,266 - MPMX19_03488 0.53 -0.9

Or see this region's nucleotide sequence