Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03484

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03483 and MPMX19_03484 are separated by 73 nucleotidesMPMX19_03484 and MPMX19_03485 are separated by 253 nucleotides MPMX19_03483: MPMX19_03483 - L-cystine-binding protein FliY, at 894,969 to 895,808 _03483 MPMX19_03484: MPMX19_03484 - hypothetical protein, at 895,882 to 896,853 _03484 MPMX19_03485: MPMX19_03485 - (S)-mandelate dehydrogenase, at 897,107 to 898,282 _03485 Position (kb) 895 896 897Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 894.883 kb on + strandat 894.883 kb on + strandat 894.883 kb on + strandat 894.884 kb on - strandat 894.884 kb on - strandat 894.939 kb on - strandat 894.954 kb on + strandat 894.954 kb on + strandat 894.954 kb on + strandat 894.954 kb on + strandat 894.955 kb on - strandat 894.955 kb on - strandat 894.955 kb on - strandat 894.970 kb on + strandat 894.970 kb on + strandat 894.970 kb on + strandat 894.985 kb on + strandat 894.985 kb on + strandat 894.985 kb on + strandat 894.985 kb on + strandat 894.985 kb on + strandat 894.986 kb on - strandat 894.986 kb on - strandat 894.997 kb on + strandat 894.998 kb on - strandat 895.117 kb on + strand, within MPMX19_03483at 895.117 kb on + strand, within MPMX19_03483at 895.118 kb on - strand, within MPMX19_03483at 895.258 kb on + strand, within MPMX19_03483at 895.258 kb on + strand, within MPMX19_03483at 895.258 kb on + strand, within MPMX19_03483at 895.258 kb on + strand, within MPMX19_03483at 895.258 kb on + strand, within MPMX19_03483at 895.259 kb on - strand, within MPMX19_03483at 895.259 kb on - strand, within MPMX19_03483at 895.259 kb on - strand, within MPMX19_03483at 895.259 kb on - strand, within MPMX19_03483at 895.259 kb on - strand, within MPMX19_03483at 895.259 kb on - strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.339 kb on + strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.340 kb on - strand, within MPMX19_03483at 895.435 kb on + strand, within MPMX19_03483at 895.436 kb on - strand, within MPMX19_03483at 895.436 kb on - strand, within MPMX19_03483at 895.436 kb on - strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.444 kb on + strand, within MPMX19_03483at 895.445 kb on - strand, within MPMX19_03483at 895.445 kb on - strand, within MPMX19_03483at 895.445 kb on - strand, within MPMX19_03483at 895.445 kb on - strand, within MPMX19_03483at 895.445 kb on - strand, within MPMX19_03483at 895.447 kb on + strand, within MPMX19_03483at 895.447 kb on + strand, within MPMX19_03483at 895.448 kb on - strand, within MPMX19_03483at 895.448 kb on - strand, within MPMX19_03483at 895.448 kb on - strand, within MPMX19_03483at 895.448 kb on - strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.450 kb on + strand, within MPMX19_03483at 895.451 kb on - strand, within MPMX19_03483at 895.451 kb on - strand, within MPMX19_03483at 895.451 kb on - strand, within MPMX19_03483at 895.451 kb on - strand, within MPMX19_03483at 895.451 kb on - strand, within MPMX19_03483at 895.959 kb on - strandat 895.959 kb on - strandat 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.240 kb on + strand, within MPMX19_03484at 896.241 kb on - strand, within MPMX19_03484at 896.241 kb on - strand, within MPMX19_03484at 896.241 kb on - strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.249 kb on + strand, within MPMX19_03484at 896.250 kb on - strand, within MPMX19_03484at 896.250 kb on - strand, within MPMX19_03484at 896.321 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.330 kb on + strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.331 kb on - strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.372 kb on + strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.373 kb on - strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.474 kb on + strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.475 kb on - strand, within MPMX19_03484at 896.534 kb on + strand, within MPMX19_03484at 896.534 kb on + strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.535 kb on - strand, within MPMX19_03484at 896.552 kb on + strand, within MPMX19_03484at 896.553 kb on - strand, within MPMX19_03484at 896.553 kb on - strand, within MPMX19_03484at 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.849 kb on + strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 896.850 kb on - strandat 897.030 kb on - strandat 897.050 kb on + strandat 897.640 kb on - strand, within MPMX19_03485at 897.648 kb on + strand, within MPMX19_03485at 897.648 kb on + strand, within MPMX19_03485at 897.775 kb on + strand, within MPMX19_03485at 897.777 kb on + strand, within MPMX19_03485at 897.778 kb on - strand, within MPMX19_03485

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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894,883 + -1.0
894,883 + -0.2
894,883 + +0.3
894,884 - -0.5
894,884 - +0.1
894,939 - +0.5
894,954 + -1.2
894,954 + -0.7
894,954 + +0.1
894,954 + -0.4
894,955 - -0.7
894,955 - +1.0
894,955 - -0.1
894,970 + +0.2
894,970 + +0.1
894,970 + -0.7
894,985 + +0.3
894,985 + +0.5
894,985 + -1.5
894,985 + +0.3
894,985 + +1.5
894,986 - -0.6
894,986 - -0.1
894,997 + -1.9
894,998 - -2.0
895,117 + MPMX19_03483 0.18 -0.9
895,117 + MPMX19_03483 0.18 +0.9
895,118 - MPMX19_03483 0.18 +0.7
895,258 + MPMX19_03483 0.34 -0.7
895,258 + MPMX19_03483 0.34 +1.1
895,258 + MPMX19_03483 0.34 +0.9
895,258 + MPMX19_03483 0.34 -0.2
895,258 + MPMX19_03483 0.34 -1.5
895,259 - MPMX19_03483 0.35 -1.8
895,259 - MPMX19_03483 0.35 -1.2
895,259 - MPMX19_03483 0.35 +0.1
895,259 - MPMX19_03483 0.35 -1.2
895,259 - MPMX19_03483 0.35 -0.6
895,259 - MPMX19_03483 0.35 +0.1
895,339 + MPMX19_03483 0.44 -0.7
895,339 + MPMX19_03483 0.44 +0.2
895,339 + MPMX19_03483 0.44 -1.4
895,339 + MPMX19_03483 0.44 -0.4
895,339 + MPMX19_03483 0.44 -2.0
895,339 + MPMX19_03483 0.44 -0.9
895,339 + MPMX19_03483 0.44 -0.7
895,339 + MPMX19_03483 0.44 -0.9
895,339 + MPMX19_03483 0.44 -1.4
895,339 + MPMX19_03483 0.44 +0.9
895,339 + MPMX19_03483 0.44 -0.4
895,339 + MPMX19_03483 0.44 -1.7
895,339 + MPMX19_03483 0.44 +0.8
895,339 + MPMX19_03483 0.44 +0.5
895,339 + MPMX19_03483 0.44 -1.2
895,339 + MPMX19_03483 0.44 +0.9
895,340 - MPMX19_03483 0.44 -1.5
895,340 - MPMX19_03483 0.44 +0.1
895,340 - MPMX19_03483 0.44 -0.1
895,340 - MPMX19_03483 0.44 -0.6
895,340 - MPMX19_03483 0.44 +0.3
895,340 - MPMX19_03483 0.44 -2.1
895,340 - MPMX19_03483 0.44 -0.5
895,435 + MPMX19_03483 0.55 -0.5
895,436 - MPMX19_03483 0.56 -2.8
895,436 - MPMX19_03483 0.56 -1.1
895,436 - MPMX19_03483 0.56 +0.9
895,444 + MPMX19_03483 0.57 -0.8
895,444 + MPMX19_03483 0.57 -0.1
895,444 + MPMX19_03483 0.57 -0.1
895,444 + MPMX19_03483 0.57 +0.1
895,444 + MPMX19_03483 0.57 -0.2
895,444 + MPMX19_03483 0.57 -0.6
895,444 + MPMX19_03483 0.57 +1.9
895,444 + MPMX19_03483 0.57 -0.9
895,445 - MPMX19_03483 0.57 +0.3
895,445 - MPMX19_03483 0.57 -1.1
895,445 - MPMX19_03483 0.57 +0.4
895,445 - MPMX19_03483 0.57 -0.7
895,445 - MPMX19_03483 0.57 -0.1
895,447 + MPMX19_03483 0.57 -0.9
895,447 + MPMX19_03483 0.57 -0.3
895,448 - MPMX19_03483 0.57 +0.4
895,448 - MPMX19_03483 0.57 +0.9
895,448 - MPMX19_03483 0.57 -1.6
895,448 - MPMX19_03483 0.57 +0.1
895,450 + MPMX19_03483 0.57 -0.4
895,450 + MPMX19_03483 0.57 -0.4
895,450 + MPMX19_03483 0.57 +0.2
895,450 + MPMX19_03483 0.57 -0.8
895,450 + MPMX19_03483 0.57 -0.4
895,450 + MPMX19_03483 0.57 -0.4
895,450 + MPMX19_03483 0.57 +1.3
895,451 - MPMX19_03483 0.57 +0.6
895,451 - MPMX19_03483 0.57 -0.5
895,451 - MPMX19_03483 0.57 +0.5
895,451 - MPMX19_03483 0.57 +0.1
895,451 - MPMX19_03483 0.57 -0.5
895,959 - -0.2
895,959 - -0.0
896,240 + MPMX19_03484 0.37 +0.6
896,240 + MPMX19_03484 0.37 -0.2
896,240 + MPMX19_03484 0.37 +1.2
896,240 + MPMX19_03484 0.37 -0.1
896,240 + MPMX19_03484 0.37 -1.1
896,240 + MPMX19_03484 0.37 +0.9
896,240 + MPMX19_03484 0.37 +0.6
896,241 - MPMX19_03484 0.37 +0.3
896,241 - MPMX19_03484 0.37 +0.0
896,241 - MPMX19_03484 0.37 -1.1
896,249 + MPMX19_03484 0.38 -1.3
896,249 + MPMX19_03484 0.38 +0.9
896,249 + MPMX19_03484 0.38 +0.5
896,249 + MPMX19_03484 0.38 +0.5
896,249 + MPMX19_03484 0.38 -0.3
896,250 - MPMX19_03484 0.38 -0.5
896,250 - MPMX19_03484 0.38 -2.5
896,321 + MPMX19_03484 0.45 -1.5
896,330 + MPMX19_03484 0.46 -0.5
896,330 + MPMX19_03484 0.46 +0.0
896,330 + MPMX19_03484 0.46 +2.2
896,330 + MPMX19_03484 0.46 -0.2
896,331 - MPMX19_03484 0.46 +0.3
896,331 - MPMX19_03484 0.46 -0.7
896,331 - MPMX19_03484 0.46 -1.5
896,331 - MPMX19_03484 0.46 +2.1
896,372 + MPMX19_03484 0.50 -2.4
896,372 + MPMX19_03484 0.50 +0.1
896,372 + MPMX19_03484 0.50 -0.2
896,372 + MPMX19_03484 0.50 +0.1
896,372 + MPMX19_03484 0.50 -0.2
896,372 + MPMX19_03484 0.50 -0.3
896,372 + MPMX19_03484 0.50 +1.1
896,372 + MPMX19_03484 0.50 -1.5
896,372 + MPMX19_03484 0.50 +1.1
896,372 + MPMX19_03484 0.50 +0.3
896,373 - MPMX19_03484 0.51 -1.4
896,373 - MPMX19_03484 0.51 +0.3
896,373 - MPMX19_03484 0.51 -0.9
896,373 - MPMX19_03484 0.51 -0.7
896,373 - MPMX19_03484 0.51 +0.6
896,373 - MPMX19_03484 0.51 -0.7
896,373 - MPMX19_03484 0.51 -1.8
896,373 - MPMX19_03484 0.51 -0.2
896,373 - MPMX19_03484 0.51 -0.1
896,373 - MPMX19_03484 0.51 +1.3
896,373 - MPMX19_03484 0.51 -0.3
896,373 - MPMX19_03484 0.51 -0.3
896,474 + MPMX19_03484 0.61 -0.9
896,474 + MPMX19_03484 0.61 -1.2
896,474 + MPMX19_03484 0.61 -0.3
896,474 + MPMX19_03484 0.61 -0.6
896,474 + MPMX19_03484 0.61 -0.6
896,474 + MPMX19_03484 0.61 +0.7
896,474 + MPMX19_03484 0.61 +1.2
896,474 + MPMX19_03484 0.61 +0.4
896,474 + MPMX19_03484 0.61 -0.1
896,474 + MPMX19_03484 0.61 +0.3
896,474 + MPMX19_03484 0.61 -0.1
896,474 + MPMX19_03484 0.61 -0.3
896,475 - MPMX19_03484 0.61 -0.3
896,475 - MPMX19_03484 0.61 +1.9
896,475 - MPMX19_03484 0.61 +0.4
896,475 - MPMX19_03484 0.61 -0.2
896,475 - MPMX19_03484 0.61 -0.7
896,475 - MPMX19_03484 0.61 -0.3
896,475 - MPMX19_03484 0.61 -0.4
896,475 - MPMX19_03484 0.61 +0.1
896,475 - MPMX19_03484 0.61 -0.1
896,475 - MPMX19_03484 0.61 +0.3
896,475 - MPMX19_03484 0.61 +0.9
896,534 + MPMX19_03484 0.67 -2.0
896,534 + MPMX19_03484 0.67 +0.1
896,535 - MPMX19_03484 0.67 -0.7
896,535 - MPMX19_03484 0.67 -2.0
896,535 - MPMX19_03484 0.67 +1.4
896,535 - MPMX19_03484 0.67 +0.3
896,535 - MPMX19_03484 0.67 -0.7
896,552 + MPMX19_03484 0.69 -1.5
896,553 - MPMX19_03484 0.69 +0.1
896,553 - MPMX19_03484 0.69 +1.8
896,849 + -0.3
896,849 + +0.4
896,849 + -2.7
896,849 + -0.3
896,849 + -0.2
896,849 + -0.2
896,849 + +0.1
896,849 + +0.1
896,849 + +0.5
896,849 + -0.7
896,850 - +0.1
896,850 - -0.7
896,850 - -1.5
896,850 - -0.6
896,850 - +0.3
896,850 - -1.2
897,030 - -0.3
897,050 + +0.1
897,640 - MPMX19_03485 0.45 -0.4
897,648 + MPMX19_03485 0.46 -2.6
897,648 + MPMX19_03485 0.46 +1.0
897,775 + MPMX19_03485 0.57 -0.4
897,777 + MPMX19_03485 0.57 -1.1
897,778 - MPMX19_03485 0.57 -0.3

Or see this region's nucleotide sequence