Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03445

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03444 and MPMX19_03445 overlap by 4 nucleotidesMPMX19_03445 and MPMX19_03446 are separated by 1 nucleotidesMPMX19_03446 and MPMX19_03447 overlap by 4 nucleotides MPMX19_03444: MPMX19_03444 - Multidrug resistance protein MdtG, at 839,474 to 841,474 _03444 MPMX19_03445: MPMX19_03445 - hypothetical protein, at 841,471 to 842,538 _03445 MPMX19_03446: MPMX19_03446 - hypothetical protein, at 842,540 to 843,352 _03446 MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590 _03447 Position (kb) 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 840.575 kb on + strand, within MPMX19_03444at 840.576 kb on - strand, within MPMX19_03444at 840.657 kb on - strand, within MPMX19_03444at 841.010 kb on + strand, within MPMX19_03444at 841.011 kb on - strand, within MPMX19_03444at 841.011 kb on - strand, within MPMX19_03444at 841.121 kb on + strand, within MPMX19_03444at 841.121 kb on + strand, within MPMX19_03444at 841.121 kb on + strand, within MPMX19_03444at 841.121 kb on + strand, within MPMX19_03444at 841.121 kb on + strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.122 kb on - strand, within MPMX19_03444at 841.343 kb on + strandat 841.343 kb on + strandat 841.344 kb on - strandat 841.344 kb on - strandat 841.344 kb on - strandat 841.344 kb on - strandat 841.344 kb on - strandat 841.344 kb on - strandat 841.344 kb on - strandat 841.346 kb on + strandat 841.346 kb on + strandat 841.347 kb on - strandat 841.347 kb on - strandat 841.347 kb on - strandat 841.347 kb on - strandat 841.829 kb on - strand, within MPMX19_03445at 842.000 kb on - strand, within MPMX19_03445at 842.000 kb on - strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.029 kb on + strand, within MPMX19_03445at 842.030 kb on - strand, within MPMX19_03445at 842.030 kb on - strand, within MPMX19_03445at 842.030 kb on - strand, within MPMX19_03445at 842.031 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.206 kb on + strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.207 kb on - strand, within MPMX19_03445at 842.375 kb on + strand, within MPMX19_03445at 842.375 kb on + strand, within MPMX19_03445at 842.376 kb on - strand, within MPMX19_03445at 842.383 kb on + strand, within MPMX19_03445at 842.384 kb on - strand, within MPMX19_03445at 842.384 kb on - strand, within MPMX19_03445at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.746 kb on + strand, within MPMX19_03446at 842.747 kb on - strand, within MPMX19_03446at 842.747 kb on - strand, within MPMX19_03446at 842.981 kb on + strand, within MPMX19_03446at 842.981 kb on + strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.376 kb on + strandat 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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840,575 + MPMX19_03444 0.55 -0.5
840,576 - MPMX19_03444 0.55 -0.9
840,657 - MPMX19_03444 0.59 -1.1
841,010 + MPMX19_03444 0.77 -0.1
841,011 - MPMX19_03444 0.77 -0.2
841,011 - MPMX19_03444 0.77 +0.2
841,121 + MPMX19_03444 0.82 +0.3
841,121 + MPMX19_03444 0.82 -2.4
841,121 + MPMX19_03444 0.82 -3.3
841,121 + MPMX19_03444 0.82 +0.2
841,121 + MPMX19_03444 0.82 -0.3
841,122 - MPMX19_03444 0.82 -0.2
841,122 - MPMX19_03444 0.82 -1.4
841,122 - MPMX19_03444 0.82 -0.9
841,122 - MPMX19_03444 0.82 -1.4
841,122 - MPMX19_03444 0.82 -0.1
841,122 - MPMX19_03444 0.82 +1.5
841,122 - MPMX19_03444 0.82 -0.1
841,122 - MPMX19_03444 0.82 -0.7
841,343 + +1.3
841,343 + +0.7
841,344 - +1.9
841,344 - -0.4
841,344 - -1.1
841,344 - +0.6
841,344 - +0.6
841,344 - -1.2
841,344 - +0.2
841,346 + -0.6
841,346 + +0.8
841,347 - -0.5
841,347 - -1.5
841,347 - +1.1
841,347 - +0.8
841,829 - MPMX19_03445 0.34 -0.1
842,000 - MPMX19_03445 0.50 -2.8
842,000 - MPMX19_03445 0.50 -0.9
842,029 + MPMX19_03445 0.52 +0.3
842,029 + MPMX19_03445 0.52 -0.5
842,029 + MPMX19_03445 0.52 -0.1
842,029 + MPMX19_03445 0.52 -1.5
842,029 + MPMX19_03445 0.52 -0.7
842,030 - MPMX19_03445 0.52 -1.0
842,030 - MPMX19_03445 0.52 +1.3
842,030 - MPMX19_03445 0.52 -1.3
842,031 + MPMX19_03445 0.52 +0.0
842,206 + MPMX19_03445 0.69 +0.0
842,206 + MPMX19_03445 0.69 -0.4
842,206 + MPMX19_03445 0.69 +0.6
842,206 + MPMX19_03445 0.69 -0.2
842,206 + MPMX19_03445 0.69 +0.7
842,206 + MPMX19_03445 0.69 -2.2
842,207 - MPMX19_03445 0.69 -1.7
842,207 - MPMX19_03445 0.69 -0.9
842,207 - MPMX19_03445 0.69 -0.7
842,207 - MPMX19_03445 0.69 -0.4
842,207 - MPMX19_03445 0.69 -0.9
842,207 - MPMX19_03445 0.69 +0.3
842,207 - MPMX19_03445 0.69 -0.9
842,207 - MPMX19_03445 0.69 +0.4
842,207 - MPMX19_03445 0.69 -0.9
842,207 - MPMX19_03445 0.69 -1.1
842,207 - MPMX19_03445 0.69 +0.5
842,207 - MPMX19_03445 0.69 +0.5
842,207 - MPMX19_03445 0.69 -0.2
842,207 - MPMX19_03445 0.69 +0.5
842,375 + MPMX19_03445 0.85 -1.3
842,375 + MPMX19_03445 0.85 +0.3
842,376 - MPMX19_03445 0.85 +0.2
842,383 + MPMX19_03445 0.85 -0.7
842,384 - MPMX19_03445 0.85 -0.9
842,384 - MPMX19_03445 0.85 -0.7
842,711 + MPMX19_03446 0.21 +1.9
842,711 + MPMX19_03446 0.21 -1.6
842,711 + MPMX19_03446 0.21 -0.9
842,711 + MPMX19_03446 0.21 -0.5
842,711 + MPMX19_03446 0.21 -0.4
842,711 + MPMX19_03446 0.21 -0.4
842,712 - MPMX19_03446 0.21 -0.9
842,712 - MPMX19_03446 0.21 -0.7
842,712 - MPMX19_03446 0.21 -0.6
842,712 - MPMX19_03446 0.21 +0.3
842,712 - MPMX19_03446 0.21 +0.0
842,712 - MPMX19_03446 0.21 -1.1
842,712 - MPMX19_03446 0.21 -1.4
842,746 + MPMX19_03446 0.25 -0.5
842,747 - MPMX19_03446 0.25 -0.3
842,747 - MPMX19_03446 0.25 +0.6
842,981 + MPMX19_03446 0.54 -2.3
842,981 + MPMX19_03446 0.54 -0.9
842,982 - MPMX19_03446 0.54 -1.2
842,982 - MPMX19_03446 0.54 +0.2
842,982 - MPMX19_03446 0.54 -0.7
842,982 - MPMX19_03446 0.54 +0.3
843,114 - MPMX19_03446 0.71 +1.9
843,114 - MPMX19_03446 0.71 +0.3
843,114 - MPMX19_03446 0.71 -0.3
843,272 + +0.6
843,272 + -2.3
843,272 + +0.2
843,272 + +0.2
843,272 + +0.0
843,273 - -0.5
843,273 - +0.1
843,273 - -0.2
843,273 - +1.3
843,376 + -0.7
843,478 + MPMX19_03447 0.10 -2.2
843,478 + MPMX19_03447 0.10 +0.4
843,478 + MPMX19_03447 0.10 +0.2
843,478 + MPMX19_03447 0.10 +0.5
843,478 + MPMX19_03447 0.10 -2.0
843,478 + MPMX19_03447 0.10 -0.0
843,479 - MPMX19_03447 0.10 -1.3
843,479 - MPMX19_03447 0.10 +0.9
843,479 - MPMX19_03447 0.10 +0.2
843,479 - MPMX19_03447 0.10 -0.1
843,479 - MPMX19_03447 0.10 -0.9

Or see this region's nucleotide sequence