Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03421

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03419 and MPMX19_03420 are separated by 1 nucleotidesMPMX19_03420 and MPMX19_03421 are separated by 142 nucleotidesMPMX19_03421 and MPMX19_03422 are separated by 47 nucleotides MPMX19_03419: MPMX19_03419 - hypothetical protein, at 810,738 to 812,534 _03419 MPMX19_03420: MPMX19_03420 - hypothetical protein, at 812,536 to 813,021 _03420 MPMX19_03421: MPMX19_03421 - hypothetical protein, at 813,164 to 813,673 _03421 MPMX19_03422: MPMX19_03422 - hypothetical protein, at 813,721 to 815,190 _03422 Position (kb) 813 814Strain fitness (log2 ratio) -2 -1 0 1at 812.453 kb on - strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.488 kb on + strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.489 kb on - strandat 812.506 kb on + strandat 812.506 kb on + strandat 812.506 kb on + strandat 812.507 kb on - strandat 812.507 kb on - strandat 812.807 kb on + strand, within MPMX19_03420at 812.807 kb on + strand, within MPMX19_03420at 812.807 kb on + strand, within MPMX19_03420at 812.808 kb on - strand, within MPMX19_03420at 812.808 kb on - strand, within MPMX19_03420at 813.243 kb on + strand, within MPMX19_03421at 813.243 kb on + strand, within MPMX19_03421at 813.244 kb on - strand, within MPMX19_03421at 813.244 kb on - strand, within MPMX19_03421at 813.252 kb on + strand, within MPMX19_03421at 813.252 kb on + strand, within MPMX19_03421at 813.253 kb on - strand, within MPMX19_03421at 813.253 kb on - strand, within MPMX19_03421at 813.687 kb on + strandat 813.815 kb on + strandat 813.842 kb on + strandat 813.842 kb on + strandat 813.842 kb on + strandat 813.842 kb on + strandat 813.843 kb on - strandat 813.843 kb on - strandat 813.843 kb on - strandat 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.917 kb on + strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.918 kb on - strand, within MPMX19_03422at 813.941 kb on + strand, within MPMX19_03422at 813.942 kb on - strand, within MPMX19_03422at 813.942 kb on - strand, within MPMX19_03422at 814.004 kb on + strand, within MPMX19_03422at 814.004 kb on + strand, within MPMX19_03422at 814.004 kb on + strand, within MPMX19_03422at 814.005 kb on - strand, within MPMX19_03422at 814.005 kb on - strand, within MPMX19_03422at 814.005 kb on - strand, within MPMX19_03422at 814.034 kb on + strand, within MPMX19_03422at 814.034 kb on + strand, within MPMX19_03422at 814.034 kb on + strand, within MPMX19_03422at 814.035 kb on - strand, within MPMX19_03422at 814.035 kb on - strand, within MPMX19_03422at 814.035 kb on - strand, within MPMX19_03422at 814.035 kb on - strand, within MPMX19_03422at 814.035 kb on - strand, within MPMX19_03422at 814.035 kb on - strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.085 kb on + strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.086 kb on - strand, within MPMX19_03422at 814.130 kb on + strand, within MPMX19_03422at 814.130 kb on + strand, within MPMX19_03422at 814.130 kb on + strand, within MPMX19_03422at 814.131 kb on - strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.322 kb on + strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.323 kb on - strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.382 kb on + strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.383 kb on - strand, within MPMX19_03422at 814.454 kb on + strand, within MPMX19_03422at 814.455 kb on - strand, within MPMX19_03422at 814.496 kb on + strand, within MPMX19_03422at 814.497 kb on - strand, within MPMX19_03422at 814.497 kb on - strand, within MPMX19_03422at 814.497 kb on - strand, within MPMX19_03422

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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812,453 - +0.2
812,488 + -1.2
812,488 + -2.4
812,488 + -1.1
812,488 + -0.5
812,488 + +1.2
812,488 + +0.1
812,489 - -1.3
812,489 - -1.2
812,489 - -0.9
812,489 - -1.8
812,489 - +0.1
812,489 - +0.6
812,489 - -1.1
812,489 - +1.7
812,506 + -0.3
812,506 + -1.4
812,506 + +0.9
812,507 - -0.6
812,507 - +0.8
812,807 + MPMX19_03420 0.56 -0.4
812,807 + MPMX19_03420 0.56 +0.3
812,807 + MPMX19_03420 0.56 -0.1
812,808 - MPMX19_03420 0.56 -0.4
812,808 - MPMX19_03420 0.56 +1.3
813,243 + MPMX19_03421 0.15 -0.2
813,243 + MPMX19_03421 0.15 -0.7
813,244 - MPMX19_03421 0.16 +0.0
813,244 - MPMX19_03421 0.16 -0.1
813,252 + MPMX19_03421 0.17 -0.4
813,252 + MPMX19_03421 0.17 -1.3
813,253 - MPMX19_03421 0.17 -1.2
813,253 - MPMX19_03421 0.17 +0.5
813,687 + -0.4
813,815 + -0.9
813,842 + -1.1
813,842 + +0.6
813,842 + +0.1
813,842 + +0.8
813,843 - +0.9
813,843 - -0.9
813,843 - +0.2
813,917 + MPMX19_03422 0.13 -0.6
813,917 + MPMX19_03422 0.13 -0.7
813,917 + MPMX19_03422 0.13 -1.1
813,917 + MPMX19_03422 0.13 +0.4
813,917 + MPMX19_03422 0.13 +0.3
813,917 + MPMX19_03422 0.13 -0.8
813,917 + MPMX19_03422 0.13 +0.6
813,917 + MPMX19_03422 0.13 +0.9
813,917 + MPMX19_03422 0.13 +1.2
813,917 + MPMX19_03422 0.13 +0.3
813,917 + MPMX19_03422 0.13 +1.2
813,917 + MPMX19_03422 0.13 +0.2
813,917 + MPMX19_03422 0.13 +0.8
813,918 - MPMX19_03422 0.13 -0.6
813,918 - MPMX19_03422 0.13 -0.2
813,918 - MPMX19_03422 0.13 -1.3
813,918 - MPMX19_03422 0.13 +0.7
813,918 - MPMX19_03422 0.13 +0.5
813,918 - MPMX19_03422 0.13 -0.9
813,918 - MPMX19_03422 0.13 +0.5
813,918 - MPMX19_03422 0.13 -0.9
813,918 - MPMX19_03422 0.13 -0.2
813,918 - MPMX19_03422 0.13 +0.6
813,918 - MPMX19_03422 0.13 -1.0
813,918 - MPMX19_03422 0.13 +0.6
813,941 + MPMX19_03422 0.15 +0.1
813,942 - MPMX19_03422 0.15 +0.4
813,942 - MPMX19_03422 0.15 -0.5
814,004 + MPMX19_03422 0.19 -0.4
814,004 + MPMX19_03422 0.19 +0.4
814,004 + MPMX19_03422 0.19 -0.4
814,005 - MPMX19_03422 0.19 -0.5
814,005 - MPMX19_03422 0.19 -0.6
814,005 - MPMX19_03422 0.19 +0.5
814,034 + MPMX19_03422 0.21 +0.0
814,034 + MPMX19_03422 0.21 -0.6
814,034 + MPMX19_03422 0.21 -0.2
814,035 - MPMX19_03422 0.21 +1.1
814,035 - MPMX19_03422 0.21 +0.8
814,035 - MPMX19_03422 0.21 +1.3
814,035 - MPMX19_03422 0.21 -0.8
814,035 - MPMX19_03422 0.21 +0.5
814,035 - MPMX19_03422 0.21 -0.6
814,085 + MPMX19_03422 0.25 -1.7
814,085 + MPMX19_03422 0.25 -0.2
814,085 + MPMX19_03422 0.25 +0.9
814,085 + MPMX19_03422 0.25 +0.7
814,085 + MPMX19_03422 0.25 -0.9
814,085 + MPMX19_03422 0.25 +0.6
814,085 + MPMX19_03422 0.25 +1.0
814,086 - MPMX19_03422 0.25 +1.1
814,086 - MPMX19_03422 0.25 -0.4
814,086 - MPMX19_03422 0.25 +0.5
814,086 - MPMX19_03422 0.25 +0.3
814,086 - MPMX19_03422 0.25 -1.0
814,086 - MPMX19_03422 0.25 +0.1
814,086 - MPMX19_03422 0.25 -1.6
814,086 - MPMX19_03422 0.25 +0.3
814,086 - MPMX19_03422 0.25 -0.3
814,130 + MPMX19_03422 0.28 +0.2
814,130 + MPMX19_03422 0.28 -0.6
814,130 + MPMX19_03422 0.28 +1.0
814,131 - MPMX19_03422 0.28 -0.7
814,322 + MPMX19_03422 0.41 +0.9
814,322 + MPMX19_03422 0.41 -0.4
814,322 + MPMX19_03422 0.41 -0.8
814,322 + MPMX19_03422 0.41 -0.7
814,322 + MPMX19_03422 0.41 -1.9
814,322 + MPMX19_03422 0.41 -0.8
814,322 + MPMX19_03422 0.41 +0.8
814,322 + MPMX19_03422 0.41 +1.0
814,323 - MPMX19_03422 0.41 +0.3
814,323 - MPMX19_03422 0.41 -0.7
814,323 - MPMX19_03422 0.41 -0.4
814,323 - MPMX19_03422 0.41 -0.2
814,323 - MPMX19_03422 0.41 -0.2
814,323 - MPMX19_03422 0.41 +0.2
814,323 - MPMX19_03422 0.41 +0.7
814,323 - MPMX19_03422 0.41 +0.5
814,382 + MPMX19_03422 0.45 -0.9
814,382 + MPMX19_03422 0.45 -0.0
814,382 + MPMX19_03422 0.45 -0.3
814,382 + MPMX19_03422 0.45 -0.7
814,382 + MPMX19_03422 0.45 -0.7
814,382 + MPMX19_03422 0.45 -1.4
814,382 + MPMX19_03422 0.45 -0.1
814,383 - MPMX19_03422 0.45 -2.0
814,383 - MPMX19_03422 0.45 -1.4
814,383 - MPMX19_03422 0.45 -1.1
814,383 - MPMX19_03422 0.45 -1.3
814,454 + MPMX19_03422 0.50 +0.3
814,455 - MPMX19_03422 0.50 -0.9
814,496 + MPMX19_03422 0.53 -0.9
814,497 - MPMX19_03422 0.53 -0.3
814,497 - MPMX19_03422 0.53 -0.9
814,497 - MPMX19_03422 0.53 -1.4

Or see this region's nucleotide sequence