Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03368 and MPMX19_03369 overlap by 13 nucleotides MPMX19_03369 and MPMX19_03370 overlap by 4 nucleotides MPMX19_03370 and MPMX19_03371 are separated by 2 nucleotides MPMX19_03371 and MPMX19_03372 are separated by 14 nucleotides
MPMX19_03368: MPMX19_03368 - hypothetical protein, at 741,972 to 745,289
_03368
MPMX19_03369: MPMX19_03369 - hypothetical protein, at 745,277 to 746,047
_03369
MPMX19_03370: MPMX19_03370 - hypothetical protein, at 746,044 to 746,520
_03370
MPMX19_03371: MPMX19_03371 - hypothetical protein, at 746,523 to 746,906
_03371
MPMX19_03372: MPMX19_03372 - hypothetical protein, at 746,921 to 750,010
_03372
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.404 kb on + strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.405 kb on - strand, within MPMX19_03368 at 744.436 kb on + strand, within MPMX19_03368 at 744.436 kb on + strand, within MPMX19_03368 at 744.437 kb on - strand, within MPMX19_03368 at 744.437 kb on - strand, within MPMX19_03368 at 744.973 kb on + strand at 744.973 kb on + strand at 744.973 kb on + strand at 744.973 kb on + strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 745.162 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.204 kb on + strand at 745.205 kb on - strand at 745.205 kb on - strand at 745.281 kb on + strand at 745.282 kb on - strand at 745.282 kb on - strand at 745.282 kb on - strand at 745.474 kb on - strand, within MPMX19_03369 at 745.474 kb on - strand, within MPMX19_03369 at 745.608 kb on + strand, within MPMX19_03369 at 745.609 kb on - strand, within MPMX19_03369 at 746.039 kb on + strand at 746.040 kb on - strand at 746.040 kb on - strand at 746.551 kb on + strand at 746.551 kb on + strand at 746.552 kb on - strand at 746.552 kb on - strand at 746.552 kb on - strand at 746.573 kb on - strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.776 kb on + strand, within MPMX19_03371 at 746.776 kb on + strand, within MPMX19_03371 at 746.777 kb on - strand, within MPMX19_03371 at 746.777 kb on - strand, within MPMX19_03371 at 746.777 kb on - strand, within MPMX19_03371 at 747.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 744,404 + MPMX19_03368 0.73 -0.1 744,404 + MPMX19_03368 0.73 -0.1 744,404 + MPMX19_03368 0.73 -1.3 744,405 - MPMX19_03368 0.73 -1.5 744,436 + MPMX19_03368 0.74 -1.8 744,436 + MPMX19_03368 0.74 -0.6 744,437 - MPMX19_03368 0.74 +0.0 744,437 - MPMX19_03368 0.74 +0.6 744,973 + -1.7 744,973 + +0.1 744,973 + -0.3 744,973 + +0.3 744,974 - +0.7 744,974 - +0.3 744,974 - -0.1 744,974 - +0.7 744,974 - -0.4 744,974 - -0.3 744,974 - +0.1 744,974 - -0.6 744,974 - +0.2 745,162 + +1.6 745,171 + -0.7 745,171 + -0.3 745,171 + -0.4 745,171 + -1.6 745,171 + +1.0 745,171 + -0.7 745,171 + +0.3 745,171 + -0.9 745,171 + -0.7 745,171 + +1.1 745,171 + +0.9 745,171 + -0.6 745,171 + -0.8 745,171 + +0.4 745,171 + +0.9 745,171 + -0.9 745,171 + -1.8 745,171 + -2.1 745,171 + -0.6 745,172 - +0.2 745,172 - -0.1 745,172 - +0.8 745,172 - +0.4 745,172 - +0.3 745,172 - +0.3 745,172 - -0.1 745,172 - -1.6 745,172 - +0.3 745,172 - +0.2 745,172 - -1.6 745,172 - -1.2 745,172 - +0.2 745,172 - +0.2 745,172 - +0.7 745,172 - +0.7 745,172 - -1.0 745,172 - +0.1 745,204 + +0.5 745,205 - -0.4 745,205 - -2.0 745,281 + +0.0 745,282 - +1.9 745,282 - +0.2 745,282 - -1.4 745,474 - MPMX19_03369 0.26 -1.3 745,474 - MPMX19_03369 0.26 -1.1 745,608 + MPMX19_03369 0.43 -0.1 745,609 - MPMX19_03369 0.43 -0.9 746,039 + -0.8 746,040 - +1.3 746,040 - +0.2 746,551 + -0.2 746,551 + -0.6 746,552 - +0.7 746,552 - -1.9 746,552 - -0.8 746,573 - MPMX19_03371 0.13 +0.3 746,737 + MPMX19_03371 0.56 -0.8 746,737 + MPMX19_03371 0.56 -0.3 746,737 + MPMX19_03371 0.56 +1.7 746,737 + MPMX19_03371 0.56 -1.7 746,738 - MPMX19_03371 0.56 +0.5 746,738 - MPMX19_03371 0.56 -1.2 746,738 - MPMX19_03371 0.56 -1.9 746,738 - MPMX19_03371 0.56 -0.4 746,776 + MPMX19_03371 0.66 -0.9 746,776 + MPMX19_03371 0.66 +0.1 746,777 - MPMX19_03371 0.66 -0.1 746,777 - MPMX19_03371 0.66 -2.1 746,777 - MPMX19_03371 0.66 +0.6 747,034 - +0.3
Or see this region's nucleotide sequence