Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03360

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03358 and MPMX19_03359 are separated by 33 nucleotidesMPMX19_03359 and MPMX19_03360 overlap by 4 nucleotidesMPMX19_03360 and MPMX19_03361 are separated by 31 nucleotides MPMX19_03358: MPMX19_03358 - hypothetical protein, at 731,737 to 732,921 _03358 MPMX19_03359: MPMX19_03359 - hypothetical protein, at 732,955 to 733,701 _03359 MPMX19_03360: MPMX19_03360 - hypothetical protein, at 733,698 to 734,111 _03360 MPMX19_03361: MPMX19_03361 - hypothetical protein, at 734,143 to 735,297 _03361 Position (kb) 733 734 735Strain fitness (log2 ratio) -2 -1 0 1 2at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.779 kb on + strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.780 kb on - strand, within MPMX19_03358at 732.794 kb on + strand, within MPMX19_03358at 732.794 kb on + strand, within MPMX19_03358at 732.794 kb on + strand, within MPMX19_03358at 732.795 kb on - strand, within MPMX19_03358at 732.795 kb on - strand, within MPMX19_03358at 732.795 kb on - strand, within MPMX19_03358at 733.139 kb on + strand, within MPMX19_03359at 733.139 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.181 kb on + strand, within MPMX19_03359at 733.182 kb on - strand, within MPMX19_03359at 733.182 kb on - strand, within MPMX19_03359at 733.182 kb on - strand, within MPMX19_03359at 733.182 kb on - strand, within MPMX19_03359at 733.184 kb on + strand, within MPMX19_03359at 733.184 kb on + strand, within MPMX19_03359at 733.184 kb on + strand, within MPMX19_03359at 733.184 kb on + strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.185 kb on - strand, within MPMX19_03359at 733.209 kb on + strand, within MPMX19_03359at 733.210 kb on - strand, within MPMX19_03359at 733.210 kb on - strand, within MPMX19_03359at 733.210 kb on - strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.289 kb on + strand, within MPMX19_03359at 733.290 kb on - strand, within MPMX19_03359at 733.290 kb on - strand, within MPMX19_03359at 733.290 kb on - strand, within MPMX19_03359at 733.296 kb on - strand, within MPMX19_03359at 733.296 kb on - strand, within MPMX19_03359at 733.296 kb on - strand, within MPMX19_03359at 733.319 kb on + strand, within MPMX19_03359at 733.319 kb on + strand, within MPMX19_03359at 733.319 kb on + strand, within MPMX19_03359at 733.319 kb on + strand, within MPMX19_03359at 733.319 kb on + strand, within MPMX19_03359at 733.320 kb on - strand, within MPMX19_03359at 733.320 kb on - strand, within MPMX19_03359at 733.320 kb on - strand, within MPMX19_03359at 733.320 kb on - strand, within MPMX19_03359at 733.320 kb on - strand, within MPMX19_03359at 733.328 kb on + strand, within MPMX19_03359at 733.329 kb on - strand, within MPMX19_03359at 733.487 kb on + strand, within MPMX19_03359at 733.487 kb on + strand, within MPMX19_03359at 733.487 kb on + strand, within MPMX19_03359at 733.487 kb on + strand, within MPMX19_03359at 733.487 kb on + strand, within MPMX19_03359at 733.487 kb on + strand, within MPMX19_03359at 733.488 kb on - strand, within MPMX19_03359at 733.488 kb on - strand, within MPMX19_03359at 733.575 kb on - strand, within MPMX19_03359at 733.587 kb on - strand, within MPMX19_03359at 733.587 kb on - strand, within MPMX19_03359at 733.701 kb on + strandat 733.701 kb on + strandat 733.701 kb on + strandat 733.702 kb on - strandat 733.702 kb on - strandat 733.702 kb on - strandat 733.720 kb on + strandat 733.720 kb on + strandat 733.720 kb on + strandat 733.720 kb on + strandat 733.720 kb on + strandat 733.720 kb on + strandat 733.720 kb on + strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.721 kb on - strandat 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.765 kb on + strand, within MPMX19_03360at 733.766 kb on - strand, within MPMX19_03360at 733.766 kb on - strand, within MPMX19_03360at 733.766 kb on - strand, within MPMX19_03360at 733.766 kb on - strand, within MPMX19_03360at 734.255 kb on + strandat 734.255 kb on + strandat 734.255 kb on + strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.256 kb on - strandat 734.342 kb on + strand, within MPMX19_03361at 734.342 kb on + strand, within MPMX19_03361at 734.342 kb on + strand, within MPMX19_03361at 734.342 kb on + strand, within MPMX19_03361at 734.342 kb on + strand, within MPMX19_03361at 734.342 kb on + strand, within MPMX19_03361at 734.343 kb on - strand, within MPMX19_03361at 734.343 kb on - strand, within MPMX19_03361at 734.343 kb on - strand, within MPMX19_03361at 734.398 kb on + strand, within MPMX19_03361at 734.399 kb on - strand, within MPMX19_03361at 734.399 kb on - strand, within MPMX19_03361at 734.406 kb on - strand, within MPMX19_03361at 734.459 kb on + strand, within MPMX19_03361at 734.459 kb on + strand, within MPMX19_03361at 734.549 kb on + strand, within MPMX19_03361at 734.549 kb on + strand, within MPMX19_03361at 734.550 kb on - strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.816 kb on + strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 734.817 kb on - strand, within MPMX19_03361at 735.015 kb on + strand, within MPMX19_03361at 735.015 kb on + strand, within MPMX19_03361at 735.015 kb on + strand, within MPMX19_03361

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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732,779 + MPMX19_03358 0.88 -1.3
732,779 + MPMX19_03358 0.88 -0.1
732,779 + MPMX19_03358 0.88 +0.2
732,779 + MPMX19_03358 0.88 -0.4
732,779 + MPMX19_03358 0.88 +1.3
732,779 + MPMX19_03358 0.88 -1.4
732,779 + MPMX19_03358 0.88 -1.9
732,779 + MPMX19_03358 0.88 -0.3
732,779 + MPMX19_03358 0.88 +0.2
732,779 + MPMX19_03358 0.88 +0.3
732,780 - MPMX19_03358 0.88 -1.3
732,780 - MPMX19_03358 0.88 +2.5
732,780 - MPMX19_03358 0.88 -0.2
732,780 - MPMX19_03358 0.88 -0.4
732,780 - MPMX19_03358 0.88 -0.1
732,780 - MPMX19_03358 0.88 -0.3
732,780 - MPMX19_03358 0.88 -0.5
732,780 - MPMX19_03358 0.88 -1.0
732,794 + MPMX19_03358 0.89 +0.1
732,794 + MPMX19_03358 0.89 -2.0
732,794 + MPMX19_03358 0.89 +0.3
732,795 - MPMX19_03358 0.89 +0.7
732,795 - MPMX19_03358 0.89 +1.0
732,795 - MPMX19_03358 0.89 +0.1
733,139 + MPMX19_03359 0.25 -0.7
733,139 + MPMX19_03359 0.25 -0.5
733,181 + MPMX19_03359 0.30 -1.1
733,181 + MPMX19_03359 0.30 -0.4
733,181 + MPMX19_03359 0.30 -0.3
733,181 + MPMX19_03359 0.30 -0.9
733,181 + MPMX19_03359 0.30 +0.2
733,181 + MPMX19_03359 0.30 -1.8
733,181 + MPMX19_03359 0.30 -1.3
733,181 + MPMX19_03359 0.30 -2.1
733,181 + MPMX19_03359 0.30 +0.0
733,181 + MPMX19_03359 0.30 -1.9
733,182 - MPMX19_03359 0.30 +0.1
733,182 - MPMX19_03359 0.30 +0.3
733,182 - MPMX19_03359 0.30 -0.1
733,182 - MPMX19_03359 0.30 +0.0
733,184 + MPMX19_03359 0.31 +1.9
733,184 + MPMX19_03359 0.31 +0.7
733,184 + MPMX19_03359 0.31 +1.0
733,184 + MPMX19_03359 0.31 -2.0
733,185 - MPMX19_03359 0.31 -0.8
733,185 - MPMX19_03359 0.31 -0.1
733,185 - MPMX19_03359 0.31 -1.4
733,185 - MPMX19_03359 0.31 +0.5
733,185 - MPMX19_03359 0.31 +0.2
733,185 - MPMX19_03359 0.31 -1.4
733,185 - MPMX19_03359 0.31 -1.4
733,185 - MPMX19_03359 0.31 +0.1
733,209 + MPMX19_03359 0.34 -0.5
733,210 - MPMX19_03359 0.34 -0.1
733,210 - MPMX19_03359 0.34 -1.1
733,210 - MPMX19_03359 0.34 +0.9
733,289 + MPMX19_03359 0.45 -1.4
733,289 + MPMX19_03359 0.45 +0.4
733,289 + MPMX19_03359 0.45 +0.8
733,289 + MPMX19_03359 0.45 -0.2
733,289 + MPMX19_03359 0.45 -0.2
733,289 + MPMX19_03359 0.45 +0.7
733,289 + MPMX19_03359 0.45 -1.8
733,290 - MPMX19_03359 0.45 -0.6
733,290 - MPMX19_03359 0.45 -0.3
733,290 - MPMX19_03359 0.45 -0.8
733,296 - MPMX19_03359 0.46 -0.6
733,296 - MPMX19_03359 0.46 -0.4
733,296 - MPMX19_03359 0.46 -1.1
733,319 + MPMX19_03359 0.49 -0.9
733,319 + MPMX19_03359 0.49 +1.4
733,319 + MPMX19_03359 0.49 -0.0
733,319 + MPMX19_03359 0.49 +0.0
733,319 + MPMX19_03359 0.49 -0.9
733,320 - MPMX19_03359 0.49 -0.3
733,320 - MPMX19_03359 0.49 -0.4
733,320 - MPMX19_03359 0.49 -0.3
733,320 - MPMX19_03359 0.49 -0.1
733,320 - MPMX19_03359 0.49 +0.2
733,328 + MPMX19_03359 0.50 -1.9
733,329 - MPMX19_03359 0.50 +0.6
733,487 + MPMX19_03359 0.71 +0.5
733,487 + MPMX19_03359 0.71 -0.5
733,487 + MPMX19_03359 0.71 -0.6
733,487 + MPMX19_03359 0.71 +1.2
733,487 + MPMX19_03359 0.71 -0.4
733,487 + MPMX19_03359 0.71 -0.2
733,488 - MPMX19_03359 0.71 +0.5
733,488 - MPMX19_03359 0.71 +0.9
733,575 - MPMX19_03359 0.83 +0.3
733,587 - MPMX19_03359 0.85 +0.3
733,587 - MPMX19_03359 0.85 -0.1
733,701 + -0.7
733,701 + +0.6
733,701 + +0.4
733,702 - -0.4
733,702 - -2.2
733,702 - -0.1
733,720 + -1.6
733,720 + -1.0
733,720 + +0.3
733,720 + +1.4
733,720 + -0.4
733,720 + -0.4
733,720 + -1.0
733,721 - -0.2
733,721 - -0.4
733,721 - -1.3
733,721 - +1.2
733,721 - -2.6
733,721 - -1.0
733,721 - -0.3
733,721 - -0.2
733,721 - -0.2
733,721 - -0.8
733,721 - -0.7
733,721 - -0.9
733,765 + MPMX19_03360 0.16 -0.3
733,765 + MPMX19_03360 0.16 +0.5
733,765 + MPMX19_03360 0.16 +0.1
733,765 + MPMX19_03360 0.16 +0.3
733,765 + MPMX19_03360 0.16 +0.8
733,765 + MPMX19_03360 0.16 -0.1
733,765 + MPMX19_03360 0.16 -0.7
733,765 + MPMX19_03360 0.16 -2.6
733,766 - MPMX19_03360 0.16 -0.6
733,766 - MPMX19_03360 0.16 +0.1
733,766 - MPMX19_03360 0.16 +0.9
733,766 - MPMX19_03360 0.16 -0.2
734,255 + +0.1
734,255 + +0.4
734,255 + +0.3
734,256 - -0.5
734,256 - -1.4
734,256 - -0.1
734,256 - -0.2
734,256 - +0.9
734,256 - -0.1
734,256 - +0.1
734,256 - +0.7
734,256 - -0.2
734,342 + MPMX19_03361 0.17 -0.1
734,342 + MPMX19_03361 0.17 -0.2
734,342 + MPMX19_03361 0.17 -0.3
734,342 + MPMX19_03361 0.17 -0.5
734,342 + MPMX19_03361 0.17 -1.8
734,342 + MPMX19_03361 0.17 +0.8
734,343 - MPMX19_03361 0.17 -0.6
734,343 - MPMX19_03361 0.17 +0.9
734,343 - MPMX19_03361 0.17 +0.5
734,398 + MPMX19_03361 0.22 -1.1
734,399 - MPMX19_03361 0.22 -1.6
734,399 - MPMX19_03361 0.22 -0.9
734,406 - MPMX19_03361 0.23 +0.3
734,459 + MPMX19_03361 0.27 +0.1
734,459 + MPMX19_03361 0.27 +0.6
734,549 + MPMX19_03361 0.35 -0.3
734,549 + MPMX19_03361 0.35 -0.8
734,550 - MPMX19_03361 0.35 -1.6
734,816 + MPMX19_03361 0.58 +0.4
734,816 + MPMX19_03361 0.58 -1.3
734,816 + MPMX19_03361 0.58 -2.1
734,816 + MPMX19_03361 0.58 -0.5
734,817 - MPMX19_03361 0.58 -0.7
734,817 - MPMX19_03361 0.58 +0.1
734,817 - MPMX19_03361 0.58 -0.4
734,817 - MPMX19_03361 0.58 +0.9
734,817 - MPMX19_03361 0.58 -0.7
735,015 + MPMX19_03361 0.75 +0.2
735,015 + MPMX19_03361 0.75 +0.7
735,015 + MPMX19_03361 0.75 -0.1

Or see this region's nucleotide sequence