Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03324

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03323 and MPMX19_03324 are separated by 92 nucleotidesMPMX19_03324 and MPMX19_03325 overlap by 4 nucleotides MPMX19_03323: MPMX19_03323 - hypothetical protein, at 674,022 to 674,948 _03323 MPMX19_03324: MPMX19_03324 - Vitamin B12 import ATP-binding protein BtuD, at 675,041 to 676,591 _03324 MPMX19_03325: MPMX19_03325 - hypothetical protein, at 676,588 to 677,742 _03325 Position (kb) 675 676 677Strain fitness (log2 ratio) -2 -1 0 1at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.392 kb on + strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.393 kb on - strand, within MPMX19_03323at 674.490 kb on + strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.491 kb on - strand, within MPMX19_03323at 674.732 kb on - strand, within MPMX19_03323at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.411 kb on + strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.412 kb on - strand, within MPMX19_03324at 675.604 kb on - strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.621 kb on + strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.622 kb on - strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.678 kb on + strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.679 kb on - strand, within MPMX19_03324at 675.717 kb on + strand, within MPMX19_03324at 675.717 kb on + strand, within MPMX19_03324at 675.730 kb on - strand, within MPMX19_03324at 675.730 kb on - strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.835 kb on + strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 675.918 kb on - strand, within MPMX19_03324at 676.625 kb on + strandat 676.626 kb on - strandat 676.820 kb on + strand, within MPMX19_03325at 676.820 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.189 kb on + strand, within MPMX19_03325at 677.190 kb on - strand, within MPMX19_03325at 677.190 kb on - strand, within MPMX19_03325at 677.265 kb on - strand, within MPMX19_03325

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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674,392 + MPMX19_03323 0.40 +0.7
674,392 + MPMX19_03323 0.40 +0.8
674,392 + MPMX19_03323 0.40 +0.2
674,392 + MPMX19_03323 0.40 +0.7
674,392 + MPMX19_03323 0.40 +0.7
674,392 + MPMX19_03323 0.40 -2.0
674,392 + MPMX19_03323 0.40 -0.2
674,393 - MPMX19_03323 0.40 -1.1
674,393 - MPMX19_03323 0.40 -1.3
674,393 - MPMX19_03323 0.40 +0.3
674,393 - MPMX19_03323 0.40 -1.7
674,393 - MPMX19_03323 0.40 +0.1
674,490 + MPMX19_03323 0.50 +0.9
674,491 - MPMX19_03323 0.51 +1.5
674,491 - MPMX19_03323 0.51 -1.3
674,491 - MPMX19_03323 0.51 -1.3
674,732 - MPMX19_03323 0.77 +0.4
675,411 + MPMX19_03324 0.24 -0.3
675,411 + MPMX19_03324 0.24 -1.3
675,411 + MPMX19_03324 0.24 -0.4
675,411 + MPMX19_03324 0.24 -0.7
675,411 + MPMX19_03324 0.24 +0.1
675,411 + MPMX19_03324 0.24 -0.0
675,411 + MPMX19_03324 0.24 -0.2
675,411 + MPMX19_03324 0.24 -0.4
675,412 - MPMX19_03324 0.24 -1.0
675,412 - MPMX19_03324 0.24 -0.7
675,412 - MPMX19_03324 0.24 -2.3
675,412 - MPMX19_03324 0.24 -0.4
675,604 - MPMX19_03324 0.36 -1.1
675,621 + MPMX19_03324 0.37 -0.0
675,621 + MPMX19_03324 0.37 +0.1
675,621 + MPMX19_03324 0.37 -0.6
675,621 + MPMX19_03324 0.37 +0.1
675,622 - MPMX19_03324 0.37 -0.8
675,622 - MPMX19_03324 0.37 -0.8
675,622 - MPMX19_03324 0.37 -0.5
675,622 - MPMX19_03324 0.37 -0.6
675,678 + MPMX19_03324 0.41 -0.1
675,678 + MPMX19_03324 0.41 -0.5
675,678 + MPMX19_03324 0.41 +1.0
675,678 + MPMX19_03324 0.41 +0.3
675,678 + MPMX19_03324 0.41 -0.4
675,678 + MPMX19_03324 0.41 -1.3
675,678 + MPMX19_03324 0.41 +0.7
675,678 + MPMX19_03324 0.41 +0.7
675,678 + MPMX19_03324 0.41 -1.3
675,678 + MPMX19_03324 0.41 -0.1
675,678 + MPMX19_03324 0.41 -0.9
675,678 + MPMX19_03324 0.41 -0.7
675,678 + MPMX19_03324 0.41 -0.9
675,678 + MPMX19_03324 0.41 +0.3
675,678 + MPMX19_03324 0.41 -0.6
675,678 + MPMX19_03324 0.41 +0.4
675,678 + MPMX19_03324 0.41 -1.4
675,678 + MPMX19_03324 0.41 -0.7
675,679 - MPMX19_03324 0.41 +0.8
675,679 - MPMX19_03324 0.41 -1.3
675,679 - MPMX19_03324 0.41 -1.8
675,679 - MPMX19_03324 0.41 -0.2
675,679 - MPMX19_03324 0.41 -1.3
675,679 - MPMX19_03324 0.41 -0.9
675,679 - MPMX19_03324 0.41 -1.1
675,679 - MPMX19_03324 0.41 +0.2
675,679 - MPMX19_03324 0.41 +0.3
675,679 - MPMX19_03324 0.41 -0.2
675,679 - MPMX19_03324 0.41 -1.1
675,679 - MPMX19_03324 0.41 -1.1
675,679 - MPMX19_03324 0.41 -1.1
675,679 - MPMX19_03324 0.41 -1.8
675,679 - MPMX19_03324 0.41 +1.6
675,679 - MPMX19_03324 0.41 -0.7
675,679 - MPMX19_03324 0.41 +0.3
675,679 - MPMX19_03324 0.41 +0.6
675,679 - MPMX19_03324 0.41 -1.1
675,679 - MPMX19_03324 0.41 +0.8
675,679 - MPMX19_03324 0.41 -0.7
675,679 - MPMX19_03324 0.41 -1.9
675,679 - MPMX19_03324 0.41 +0.7
675,717 + MPMX19_03324 0.44 +0.0
675,717 + MPMX19_03324 0.44 -0.4
675,730 - MPMX19_03324 0.44 +0.1
675,730 - MPMX19_03324 0.44 +0.6
675,835 + MPMX19_03324 0.51 +0.3
675,835 + MPMX19_03324 0.51 +0.4
675,835 + MPMX19_03324 0.51 -2.6
675,835 + MPMX19_03324 0.51 -0.5
675,918 - MPMX19_03324 0.57 -0.9
675,918 - MPMX19_03324 0.57 -0.9
675,918 - MPMX19_03324 0.57 +0.2
675,918 - MPMX19_03324 0.57 +0.3
675,918 - MPMX19_03324 0.57 +0.5
676,625 + -1.2
676,626 - -0.1
676,820 + MPMX19_03325 0.20 -0.5
676,820 + MPMX19_03325 0.20 -0.1
677,189 + MPMX19_03325 0.52 +0.3
677,189 + MPMX19_03325 0.52 -0.7
677,189 + MPMX19_03325 0.52 -2.7
677,189 + MPMX19_03325 0.52 -0.5
677,190 - MPMX19_03325 0.52 -0.5
677,190 - MPMX19_03325 0.52 -1.1
677,265 - MPMX19_03325 0.59 -0.7

Or see this region's nucleotide sequence