Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03319

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03318 and MPMX19_03319 are separated by 36 nucleotidesMPMX19_03319 and MPMX19_03320 are separated by 28 nucleotides MPMX19_03318: MPMX19_03318 - hypothetical protein, at 666,429 to 667,916 _03318 MPMX19_03319: MPMX19_03319 - hypothetical protein, at 667,953 to 669,902 _03319 MPMX19_03320: MPMX19_03320 - hypothetical protein, at 669,931 to 671,307 _03320 Position (kb) 667 668 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.111 kb on + strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.112 kb on - strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.123 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.353 kb on + strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.354 kb on - strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.450 kb on + strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.451 kb on - strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.708 kb on + strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.709 kb on - strand, within MPMX19_03318at 667.768 kb on + strandat 667.768 kb on + strandat 667.768 kb on + strandat 667.768 kb on + strandat 667.768 kb on + strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.769 kb on - strandat 667.837 kb on + strandat 667.837 kb on + strandat 667.837 kb on + strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 667.838 kb on - strandat 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.383 kb on + strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.384 kb on - strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.911 kb on + strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.912 kb on - strand, within MPMX19_03319at 668.970 kb on + strand, within MPMX19_03319at 668.971 kb on - strand, within MPMX19_03319at 668.971 kb on - strand, within MPMX19_03319at 669.164 kb on + strand, within MPMX19_03319at 669.164 kb on + strand, within MPMX19_03319at 669.164 kb on + strand, within MPMX19_03319at 669.165 kb on - strand, within MPMX19_03319at 669.165 kb on - strand, within MPMX19_03319at 669.165 kb on - strand, within MPMX19_03319at 669.165 kb on - strand, within MPMX19_03319at 669.165 kb on - strand, within MPMX19_03319at 669.356 kb on - strand, within MPMX19_03319at 669.356 kb on - strand, within MPMX19_03319at 669.356 kb on - strand, within MPMX19_03319at 669.356 kb on - strand, within MPMX19_03319at 669.376 kb on + strand, within MPMX19_03319at 669.377 kb on - strand, within MPMX19_03319at 669.377 kb on - strand, within MPMX19_03319at 669.452 kb on - strand, within MPMX19_03319at 669.592 kb on + strand, within MPMX19_03319at 669.592 kb on + strand, within MPMX19_03319at 669.592 kb on + strand, within MPMX19_03319at 669.592 kb on + strand, within MPMX19_03319at 669.592 kb on + strand, within MPMX19_03319at 669.592 kb on + strand, within MPMX19_03319at 669.593 kb on - strand, within MPMX19_03319at 669.593 kb on - strand, within MPMX19_03319at 669.593 kb on - strand, within MPMX19_03319at 669.593 kb on - strand, within MPMX19_03319at 669.593 kb on - strand, within MPMX19_03319at 669.604 kb on + strand, within MPMX19_03319at 669.605 kb on - strand, within MPMX19_03319at 669.605 kb on - strand, within MPMX19_03319at 669.605 kb on - strand, within MPMX19_03319at 669.605 kb on - strand, within MPMX19_03319at 669.675 kb on - strand, within MPMX19_03319at 669.675 kb on - strand, within MPMX19_03319at 669.675 kb on - strand, within MPMX19_03319at 669.675 kb on - strand, within MPMX19_03319at 669.701 kb on + strand, within MPMX19_03319at 669.721 kb on + strandat 669.722 kb on - strandat 669.722 kb on - strandat 669.722 kb on - strandat 669.772 kb on + strandat 669.772 kb on + strandat 669.772 kb on + strandat 669.772 kb on + strandat 669.772 kb on + strandat 669.772 kb on + strandat 669.773 kb on - strandat 669.773 kb on - strandat 669.773 kb on - strandat 669.773 kb on - strandat 670.460 kb on - strand, within MPMX19_03320at 670.872 kb on + strand, within MPMX19_03320at 670.872 kb on + strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320at 670.873 kb on - strand, within MPMX19_03320

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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667,111 + MPMX19_03318 0.46 -0.9
667,111 + MPMX19_03318 0.46 +0.3
667,111 + MPMX19_03318 0.46 -1.5
667,111 + MPMX19_03318 0.46 -0.0
667,111 + MPMX19_03318 0.46 +0.6
667,111 + MPMX19_03318 0.46 -1.5
667,111 + MPMX19_03318 0.46 +2.2
667,111 + MPMX19_03318 0.46 -1.1
667,111 + MPMX19_03318 0.46 -0.1
667,112 - MPMX19_03318 0.46 +0.7
667,112 - MPMX19_03318 0.46 +0.2
667,112 - MPMX19_03318 0.46 +0.9
667,112 - MPMX19_03318 0.46 +0.0
667,123 + MPMX19_03318 0.47 -0.2
667,123 + MPMX19_03318 0.47 -0.7
667,123 + MPMX19_03318 0.47 +0.8
667,353 + MPMX19_03318 0.62 -0.9
667,353 + MPMX19_03318 0.62 +0.0
667,353 + MPMX19_03318 0.62 +0.6
667,354 - MPMX19_03318 0.62 -0.7
667,354 - MPMX19_03318 0.62 -0.0
667,354 - MPMX19_03318 0.62 +0.9
667,354 - MPMX19_03318 0.62 -0.2
667,354 - MPMX19_03318 0.62 +0.8
667,354 - MPMX19_03318 0.62 +0.5
667,450 + MPMX19_03318 0.69 -1.4
667,450 + MPMX19_03318 0.69 -0.5
667,450 + MPMX19_03318 0.69 -0.4
667,450 + MPMX19_03318 0.69 -1.7
667,451 - MPMX19_03318 0.69 +1.1
667,451 - MPMX19_03318 0.69 +1.2
667,451 - MPMX19_03318 0.69 +0.2
667,451 - MPMX19_03318 0.69 +0.1
667,708 + MPMX19_03318 0.86 -1.1
667,708 + MPMX19_03318 0.86 -2.1
667,708 + MPMX19_03318 0.86 -0.3
667,708 + MPMX19_03318 0.86 -0.0
667,708 + MPMX19_03318 0.86 -0.1
667,708 + MPMX19_03318 0.86 -0.0
667,708 + MPMX19_03318 0.86 +0.3
667,708 + MPMX19_03318 0.86 +1.2
667,709 - MPMX19_03318 0.86 +0.7
667,709 - MPMX19_03318 0.86 +0.4
667,709 - MPMX19_03318 0.86 -0.1
667,709 - MPMX19_03318 0.86 -1.3
667,709 - MPMX19_03318 0.86 -0.3
667,709 - MPMX19_03318 0.86 +0.9
667,768 + +1.5
667,768 + +0.0
667,768 + +2.3
667,768 + +0.1
667,768 + -1.1
667,769 - -1.7
667,769 - -0.1
667,769 - -0.9
667,769 - +0.7
667,769 - -0.6
667,769 - -0.1
667,837 + -1.3
667,837 + -0.8
667,837 + +0.8
667,838 - -1.4
667,838 - -0.2
667,838 - -0.9
667,838 - -0.4
667,838 - -0.5
667,838 - +0.7
667,838 - -0.1
668,383 + MPMX19_03319 0.22 +0.2
668,383 + MPMX19_03319 0.22 -1.6
668,383 + MPMX19_03319 0.22 -0.5
668,383 + MPMX19_03319 0.22 -0.8
668,383 + MPMX19_03319 0.22 -0.2
668,383 + MPMX19_03319 0.22 +0.5
668,383 + MPMX19_03319 0.22 -0.2
668,383 + MPMX19_03319 0.22 -0.5
668,383 + MPMX19_03319 0.22 -0.1
668,383 + MPMX19_03319 0.22 -1.5
668,383 + MPMX19_03319 0.22 -1.5
668,383 + MPMX19_03319 0.22 -1.5
668,384 - MPMX19_03319 0.22 -0.4
668,384 - MPMX19_03319 0.22 +1.3
668,384 - MPMX19_03319 0.22 -0.8
668,384 - MPMX19_03319 0.22 -1.7
668,384 - MPMX19_03319 0.22 -0.9
668,384 - MPMX19_03319 0.22 +0.2
668,384 - MPMX19_03319 0.22 +0.0
668,384 - MPMX19_03319 0.22 +1.3
668,384 - MPMX19_03319 0.22 +1.2
668,384 - MPMX19_03319 0.22 -1.0
668,384 - MPMX19_03319 0.22 -1.7
668,911 + MPMX19_03319 0.49 +0.4
668,911 + MPMX19_03319 0.49 +0.9
668,911 + MPMX19_03319 0.49 -1.0
668,911 + MPMX19_03319 0.49 +1.3
668,911 + MPMX19_03319 0.49 +2.4
668,911 + MPMX19_03319 0.49 +0.9
668,912 - MPMX19_03319 0.49 -1.0
668,912 - MPMX19_03319 0.49 -1.3
668,912 - MPMX19_03319 0.49 +0.2
668,912 - MPMX19_03319 0.49 +0.1
668,912 - MPMX19_03319 0.49 -0.1
668,912 - MPMX19_03319 0.49 -0.4
668,912 - MPMX19_03319 0.49 +1.2
668,912 - MPMX19_03319 0.49 -0.7
668,970 + MPMX19_03319 0.52 +0.2
668,971 - MPMX19_03319 0.52 +1.1
668,971 - MPMX19_03319 0.52 +1.2
669,164 + MPMX19_03319 0.62 +0.8
669,164 + MPMX19_03319 0.62 +0.0
669,164 + MPMX19_03319 0.62 -0.1
669,165 - MPMX19_03319 0.62 -0.2
669,165 - MPMX19_03319 0.62 -0.8
669,165 - MPMX19_03319 0.62 +0.6
669,165 - MPMX19_03319 0.62 +1.2
669,165 - MPMX19_03319 0.62 -1.5
669,356 - MPMX19_03319 0.72 -0.7
669,356 - MPMX19_03319 0.72 -0.3
669,356 - MPMX19_03319 0.72 -1.2
669,356 - MPMX19_03319 0.72 -2.1
669,376 + MPMX19_03319 0.73 +0.3
669,377 - MPMX19_03319 0.73 -0.7
669,377 - MPMX19_03319 0.73 -1.2
669,452 - MPMX19_03319 0.77 -0.9
669,592 + MPMX19_03319 0.84 -2.5
669,592 + MPMX19_03319 0.84 -1.4
669,592 + MPMX19_03319 0.84 +0.6
669,592 + MPMX19_03319 0.84 -0.3
669,592 + MPMX19_03319 0.84 -1.7
669,592 + MPMX19_03319 0.84 -1.8
669,593 - MPMX19_03319 0.84 -0.4
669,593 - MPMX19_03319 0.84 +0.3
669,593 - MPMX19_03319 0.84 -0.3
669,593 - MPMX19_03319 0.84 +0.4
669,593 - MPMX19_03319 0.84 +1.6
669,604 + MPMX19_03319 0.85 +0.9
669,605 - MPMX19_03319 0.85 +0.5
669,605 - MPMX19_03319 0.85 +0.2
669,605 - MPMX19_03319 0.85 +0.9
669,605 - MPMX19_03319 0.85 -1.8
669,675 - MPMX19_03319 0.88 +0.9
669,675 - MPMX19_03319 0.88 -0.5
669,675 - MPMX19_03319 0.88 -2.9
669,675 - MPMX19_03319 0.88 -0.2
669,701 + MPMX19_03319 0.90 +0.1
669,721 + -1.1
669,722 - -0.8
669,722 - -1.7
669,722 - +0.1
669,772 + -0.1
669,772 + -0.9
669,772 + -0.4
669,772 + +0.5
669,772 + -1.1
669,772 + -2.1
669,773 - -1.5
669,773 - -0.4
669,773 - -1.4
669,773 - -0.6
670,460 - MPMX19_03320 0.38 -0.1
670,872 + MPMX19_03320 0.68 -2.5
670,872 + MPMX19_03320 0.68 -0.1
670,873 - MPMX19_03320 0.68 -0.2
670,873 - MPMX19_03320 0.68 -0.8
670,873 - MPMX19_03320 0.68 -0.1
670,873 - MPMX19_03320 0.68 -0.5

Or see this region's nucleotide sequence