Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03311

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03310 and MPMX19_03311 are separated by 47 nucleotidesMPMX19_03311 and MPMX19_03312 overlap by 4 nucleotides MPMX19_03310: MPMX19_03310 - Ribose import binding protein RbsB, at 657,196 to 658,140 _03310 MPMX19_03311: MPMX19_03311 - Ribose import permease protein RbsC, at 658,188 to 659,279 _03311 MPMX19_03312: MPMX19_03312 - Galactose/methyl galactoside import ATP-binding protein MglA, at 659,276 to 660,850 _03312 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2at 657.200 kb on + strandat 657.200 kb on + strandat 657.201 kb on - strandat 657.323 kb on + strand, within MPMX19_03310at 657.323 kb on + strand, within MPMX19_03310at 657.323 kb on + strand, within MPMX19_03310at 657.324 kb on - strand, within MPMX19_03310at 657.324 kb on - strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.569 kb on + strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.570 kb on - strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.611 kb on + strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.612 kb on - strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.662 kb on + strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.663 kb on - strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.764 kb on + strand, within MPMX19_03310at 657.765 kb on - strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.767 kb on + strand, within MPMX19_03310at 657.768 kb on - strand, within MPMX19_03310at 657.768 kb on - strand, within MPMX19_03310at 657.974 kb on + strand, within MPMX19_03310at 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.160 kb on + strandat 658.161 kb on - strandat 658.161 kb on - strandat 658.161 kb on - strandat 658.161 kb on - strandat 658.402 kb on + strand, within MPMX19_03311at 658.402 kb on + strand, within MPMX19_03311at 658.403 kb on - strand, within MPMX19_03311at 658.403 kb on - strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.884 kb on - strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.024 kb on - strand, within MPMX19_03311at 659.184 kb on + strandat 659.185 kb on - strandat 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.661 kb on + strand, within MPMX19_03312at 659.661 kb on + strand, within MPMX19_03312at 659.662 kb on - strand, within MPMX19_03312at 659.662 kb on - strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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657,200 + -1.0
657,200 + -0.6
657,201 - +0.8
657,323 + MPMX19_03310 0.13 +1.6
657,323 + MPMX19_03310 0.13 +0.2
657,323 + MPMX19_03310 0.13 +0.2
657,324 - MPMX19_03310 0.14 -1.0
657,324 - MPMX19_03310 0.14 -1.4
657,569 + MPMX19_03310 0.39 -1.7
657,569 + MPMX19_03310 0.39 +0.1
657,569 + MPMX19_03310 0.39 +1.5
657,569 + MPMX19_03310 0.39 -1.0
657,569 + MPMX19_03310 0.39 +1.2
657,569 + MPMX19_03310 0.39 -2.3
657,569 + MPMX19_03310 0.39 -0.3
657,569 + MPMX19_03310 0.39 -0.6
657,569 + MPMX19_03310 0.39 +0.2
657,570 - MPMX19_03310 0.40 -1.6
657,570 - MPMX19_03310 0.40 -0.8
657,570 - MPMX19_03310 0.40 -0.1
657,570 - MPMX19_03310 0.40 +0.1
657,570 - MPMX19_03310 0.40 +0.7
657,570 - MPMX19_03310 0.40 -1.9
657,611 + MPMX19_03310 0.44 -0.5
657,611 + MPMX19_03310 0.44 +0.3
657,611 + MPMX19_03310 0.44 -0.5
657,611 + MPMX19_03310 0.44 +0.0
657,611 + MPMX19_03310 0.44 -1.3
657,611 + MPMX19_03310 0.44 -1.8
657,612 - MPMX19_03310 0.44 +0.8
657,612 - MPMX19_03310 0.44 -1.0
657,612 - MPMX19_03310 0.44 -0.1
657,662 + MPMX19_03310 0.49 -0.9
657,662 + MPMX19_03310 0.49 -1.5
657,662 + MPMX19_03310 0.49 -0.9
657,662 + MPMX19_03310 0.49 -0.1
657,662 + MPMX19_03310 0.49 -0.1
657,662 + MPMX19_03310 0.49 +0.2
657,662 + MPMX19_03310 0.49 -0.7
657,662 + MPMX19_03310 0.49 -0.0
657,662 + MPMX19_03310 0.49 -0.1
657,662 + MPMX19_03310 0.49 -0.4
657,662 + MPMX19_03310 0.49 +0.5
657,662 + MPMX19_03310 0.49 -0.2
657,662 + MPMX19_03310 0.49 +0.3
657,663 - MPMX19_03310 0.49 -1.5
657,663 - MPMX19_03310 0.49 -0.0
657,663 - MPMX19_03310 0.49 +0.3
657,663 - MPMX19_03310 0.49 +0.9
657,663 - MPMX19_03310 0.49 -0.7
657,663 - MPMX19_03310 0.49 -2.0
657,663 - MPMX19_03310 0.49 -0.6
657,663 - MPMX19_03310 0.49 +0.5
657,663 - MPMX19_03310 0.49 +0.3
657,663 - MPMX19_03310 0.49 -0.5
657,663 - MPMX19_03310 0.49 -0.7
657,663 - MPMX19_03310 0.49 -0.1
657,663 - MPMX19_03310 0.49 +0.4
657,764 + MPMX19_03310 0.60 -1.9
657,764 + MPMX19_03310 0.60 -1.4
657,764 + MPMX19_03310 0.60 -0.2
657,765 - MPMX19_03310 0.60 +0.1
657,767 + MPMX19_03310 0.60 +0.4
657,767 + MPMX19_03310 0.60 +0.9
657,767 + MPMX19_03310 0.60 +1.0
657,767 + MPMX19_03310 0.60 -1.3
657,768 - MPMX19_03310 0.61 +0.9
657,768 - MPMX19_03310 0.61 -0.8
657,974 + MPMX19_03310 0.82 +0.0
658,160 + +0.9
658,160 + -1.3
658,160 + -1.5
658,160 + -0.9
658,160 + +1.1
658,160 + +1.9
658,160 + +0.3
658,161 - +0.2
658,161 - -1.3
658,161 - +0.5
658,161 - +0.1
658,402 + MPMX19_03311 0.20 -1.1
658,402 + MPMX19_03311 0.20 +0.4
658,403 - MPMX19_03311 0.20 -1.1
658,403 - MPMX19_03311 0.20 -0.2
658,489 + MPMX19_03311 0.28 +0.3
658,489 + MPMX19_03311 0.28 -0.4
658,489 + MPMX19_03311 0.28 +0.1
658,489 + MPMX19_03311 0.28 +0.2
658,489 + MPMX19_03311 0.28 -0.7
658,489 + MPMX19_03311 0.28 +0.9
658,489 + MPMX19_03311 0.28 +0.9
658,489 + MPMX19_03311 0.28 -0.4
658,489 + MPMX19_03311 0.28 -1.4
658,489 + MPMX19_03311 0.28 -0.6
658,489 + MPMX19_03311 0.28 +0.9
658,489 + MPMX19_03311 0.28 -0.1
658,489 + MPMX19_03311 0.28 +0.0
658,489 + MPMX19_03311 0.28 +1.2
658,489 + MPMX19_03311 0.28 +1.6
658,489 + MPMX19_03311 0.28 -0.7
658,489 + MPMX19_03311 0.28 +0.2
658,490 - MPMX19_03311 0.28 +0.2
658,490 - MPMX19_03311 0.28 +0.7
658,490 - MPMX19_03311 0.28 -0.7
658,490 - MPMX19_03311 0.28 +0.1
658,490 - MPMX19_03311 0.28 +0.5
658,490 - MPMX19_03311 0.28 -0.5
658,490 - MPMX19_03311 0.28 +0.7
658,490 - MPMX19_03311 0.28 -1.0
658,490 - MPMX19_03311 0.28 -1.7
658,490 - MPMX19_03311 0.28 -1.3
658,561 + MPMX19_03311 0.34 -0.2
658,561 + MPMX19_03311 0.34 -1.4
658,561 + MPMX19_03311 0.34 +0.9
658,561 + MPMX19_03311 0.34 -0.3
658,561 + MPMX19_03311 0.34 -0.1
658,561 + MPMX19_03311 0.34 +0.7
658,561 + MPMX19_03311 0.34 +0.9
658,561 + MPMX19_03311 0.34 -0.3
658,561 + MPMX19_03311 0.34 +0.2
658,561 + MPMX19_03311 0.34 +0.3
658,561 + MPMX19_03311 0.34 +0.3
658,561 + MPMX19_03311 0.34 -0.4
658,561 + MPMX19_03311 0.34 +0.3
658,562 - MPMX19_03311 0.34 +0.6
658,562 - MPMX19_03311 0.34 -1.5
658,562 - MPMX19_03311 0.34 -1.3
658,562 - MPMX19_03311 0.34 -0.1
658,562 - MPMX19_03311 0.34 +0.6
658,562 - MPMX19_03311 0.34 +0.2
658,562 - MPMX19_03311 0.34 +0.7
658,562 - MPMX19_03311 0.34 -0.7
658,562 - MPMX19_03311 0.34 -1.5
658,562 - MPMX19_03311 0.34 -1.3
658,562 - MPMX19_03311 0.34 +0.7
658,562 - MPMX19_03311 0.34 +0.0
658,562 - MPMX19_03311 0.34 -0.7
658,562 - MPMX19_03311 0.34 +0.5
658,562 - MPMX19_03311 0.34 -2.5
658,562 - MPMX19_03311 0.34 -0.1
658,562 - MPMX19_03311 0.34 -0.5
658,562 - MPMX19_03311 0.34 +0.2
658,562 - MPMX19_03311 0.34 -1.8
658,562 - MPMX19_03311 0.34 -0.8
658,884 - MPMX19_03311 0.64 +1.1
659,023 + MPMX19_03311 0.76 +0.7
659,023 + MPMX19_03311 0.76 -1.5
659,023 + MPMX19_03311 0.76 -0.4
659,024 - MPMX19_03311 0.77 -0.7
659,184 + -1.3
659,185 - +0.5
659,490 + MPMX19_03312 0.14 -0.4
659,490 + MPMX19_03312 0.14 -0.3
659,490 + MPMX19_03312 0.14 +0.3
659,490 + MPMX19_03312 0.14 -0.6
659,490 + MPMX19_03312 0.14 +0.9
659,490 + MPMX19_03312 0.14 -0.4
659,490 + MPMX19_03312 0.14 -0.4
659,491 - MPMX19_03312 0.14 +0.1
659,491 - MPMX19_03312 0.14 -0.6
659,491 - MPMX19_03312 0.14 +1.5
659,491 - MPMX19_03312 0.14 +0.7
659,491 - MPMX19_03312 0.14 -0.1
659,661 + MPMX19_03312 0.24 -0.6
659,661 + MPMX19_03312 0.24 +0.5
659,662 - MPMX19_03312 0.25 -0.0
659,662 - MPMX19_03312 0.25 -0.3
659,802 + MPMX19_03312 0.33 -1.0
659,802 + MPMX19_03312 0.33 -0.9
659,802 + MPMX19_03312 0.33 -0.9
659,802 + MPMX19_03312 0.33 +1.4
659,802 + MPMX19_03312 0.33 -0.4
659,803 - MPMX19_03312 0.33 +0.9
659,803 - MPMX19_03312 0.33 -2.0
659,803 - MPMX19_03312 0.33 -0.5
659,803 - MPMX19_03312 0.33 -1.9
660,213 + MPMX19_03312 0.59 +0.9
660,213 + MPMX19_03312 0.59 -0.5
660,213 + MPMX19_03312 0.59 -0.1
660,213 + MPMX19_03312 0.59 +1.0
660,213 + MPMX19_03312 0.59 +0.1
660,213 + MPMX19_03312 0.59 +0.3
660,213 + MPMX19_03312 0.59 +0.1
660,213 + MPMX19_03312 0.59 -0.3
660,214 - MPMX19_03312 0.60 -1.2
660,214 - MPMX19_03312 0.60 +0.3
660,214 - MPMX19_03312 0.60 +0.3
660,214 - MPMX19_03312 0.60 -0.8
660,214 - MPMX19_03312 0.60 +0.1
660,214 - MPMX19_03312 0.60 -0.9
660,214 - MPMX19_03312 0.60 -1.2
660,214 - MPMX19_03312 0.60 -1.6
660,214 - MPMX19_03312 0.60 -2.2
660,214 - MPMX19_03312 0.60 -1.1
660,214 - MPMX19_03312 0.60 -0.9
660,214 - MPMX19_03312 0.60 -0.5
660,214 - MPMX19_03312 0.60 +0.6
660,214 - MPMX19_03312 0.60 -1.3
660,214 - MPMX19_03312 0.60 +0.9

Or see this region's nucleotide sequence