Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03203 and MPMX19_03204 are separated by 175 nucleotides MPMX19_03204 and MPMX19_03205 are separated by 228 nucleotides
MPMX19_03203: MPMX19_03203 - hypothetical protein, at 500,875 to 501,909
_03203
MPMX19_03204: MPMX19_03204 - IS110 family transposase ISMno25, at 502,085 to 503,260
_03204
MPMX19_03205: MPMX19_03205 - IS5 family transposase ISAzs10, at 503,489 to 504,565
_03205
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 501.168 kb on + strand, within MPMX19_03203 at 501.169 kb on - strand, within MPMX19_03203 at 501.169 kb on - strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.546 kb on + strand, within MPMX19_03203 at 501.548 kb on + strand, within MPMX19_03203 at 501.548 kb on + strand, within MPMX19_03203 at 501.549 kb on - strand, within MPMX19_03203 at 501.549 kb on - strand, within MPMX19_03203 at 501.570 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.637 kb on - strand, within MPMX19_03203 at 501.637 kb on - strand, within MPMX19_03203 at 501.637 kb on - strand, within MPMX19_03203 at 501.647 kb on + strand, within MPMX19_03203 at 501.648 kb on - strand, within MPMX19_03203 at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.908 kb on - strand at 501.908 kb on - strand at 501.908 kb on - strand at 501.930 kb on - strand at 501.981 kb on + strand at 501.981 kb on + strand at 501.981 kb on + strand at 501.982 kb on - strand at 501.982 kb on - strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.013 kb on + strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.058 kb on + strand at 502.086 kb on + strand at 502.086 kb on + strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.331 kb on + strand, within MPMX19_03204 at 502.390 kb on - strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.601 kb on - strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.745 kb on + strand, within MPMX19_03204 at 502.894 kb on + strand, within MPMX19_03204 at 502.940 kb on + strand, within MPMX19_03204 at 502.940 kb on + strand, within MPMX19_03204 at 502.941 kb on - strand, within MPMX19_03204 at 503.025 kb on + strand, within MPMX19_03204 at 503.025 kb on + strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.026 kb on - strand, within MPMX19_03204 at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.154 kb on - strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.318 kb on + strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.319 kb on - strand at 503.368 kb on - strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.406 kb on + strand at 503.407 kb on - strand at 503.407 kb on - strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.427 kb on + strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.428 kb on - strand at 503.470 kb on + strand at 503.470 kb on + strand at 503.470 kb on + strand at 503.471 kb on - strand at 503.471 kb on - strand at 503.471 kb on - strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.528 kb on + strand at 503.529 kb on - strand at 503.529 kb on - strand at 503.529 kb on - strand at 503.803 kb on + strand, within MPMX19_03205 at 504.087 kb on - strand, within MPMX19_03205
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 501,168 + MPMX19_03203 0.28 -1.0 501,169 - MPMX19_03203 0.28 -0.1 501,169 - MPMX19_03203 0.28 -1.4 501,448 + MPMX19_03203 0.55 +0.0 501,448 + MPMX19_03203 0.55 -1.7 501,448 + MPMX19_03203 0.55 -1.3 501,448 + MPMX19_03203 0.55 -0.7 501,448 + MPMX19_03203 0.55 +0.3 501,546 + MPMX19_03203 0.65 -0.7 501,548 + MPMX19_03203 0.65 +0.1 501,548 + MPMX19_03203 0.65 +0.3 501,549 - MPMX19_03203 0.65 +0.2 501,549 - MPMX19_03203 0.65 -0.6 501,570 + MPMX19_03203 0.67 -1.2 501,634 + MPMX19_03203 0.73 -0.2 501,634 + MPMX19_03203 0.73 -0.9 501,634 + MPMX19_03203 0.73 +1.2 501,634 + MPMX19_03203 0.73 -0.4 501,634 + MPMX19_03203 0.73 -0.4 501,634 + MPMX19_03203 0.73 +0.0 501,634 + MPMX19_03203 0.73 -0.7 501,634 + MPMX19_03203 0.73 -1.4 501,634 + MPMX19_03203 0.73 -0.2 501,635 - MPMX19_03203 0.73 +0.2 501,635 - MPMX19_03203 0.73 -0.4 501,635 - MPMX19_03203 0.73 -1.5 501,635 - MPMX19_03203 0.73 -0.7 501,635 - MPMX19_03203 0.73 -0.4 501,636 + MPMX19_03203 0.74 -1.1 501,636 + MPMX19_03203 0.74 +0.4 501,636 + MPMX19_03203 0.74 -0.6 501,636 + MPMX19_03203 0.74 +0.2 501,636 + MPMX19_03203 0.74 -0.7 501,637 - MPMX19_03203 0.74 -1.0 501,637 - MPMX19_03203 0.74 -0.7 501,637 - MPMX19_03203 0.74 -0.4 501,647 + MPMX19_03203 0.75 -3.0 501,648 - MPMX19_03203 0.75 +0.0 501,907 + +0.5 501,907 + +1.4 501,907 + -0.1 501,907 + -0.3 501,907 + +0.6 501,907 + -0.5 501,908 - +0.0 501,908 - -0.3 501,908 - +0.1 501,930 - -0.3 501,981 + -1.0 501,981 + -0.7 501,981 + -0.2 501,982 - -0.3 501,982 - +0.1 502,011 + -0.1 502,011 + +1.7 502,011 + -0.3 502,011 + -0.7 502,011 + +0.0 502,011 + -1.0 502,011 + -0.1 502,011 + +0.0 502,011 + -1.5 502,011 + +0.9 502,011 + -0.0 502,011 + -0.1 502,011 + -0.7 502,011 + +0.3 502,011 + -0.9 502,011 + -0.5 502,011 + -0.1 502,012 - -1.3 502,012 - +2.5 502,012 - -0.2 502,012 - -0.3 502,012 - -1.8 502,012 - -1.3 502,012 - -0.3 502,012 - -1.7 502,012 - -1.7 502,012 - -1.7 502,012 - -1.3 502,012 - +0.2 502,012 - -0.3 502,013 + -3.0 502,014 - +2.2 502,014 - +0.1 502,058 + -0.4 502,086 + -3.3 502,086 + +0.9 502,087 - -1.5 502,087 - -0.1 502,087 - -2.1 502,087 - -0.2 502,087 - -0.9 502,087 - +0.3 502,331 + MPMX19_03204 0.21 +0.1 502,390 - MPMX19_03204 0.26 +0.3 502,498 + MPMX19_03204 0.35 -1.8 502,498 + MPMX19_03204 0.35 -2.0 502,498 + MPMX19_03204 0.35 +1.0 502,498 + MPMX19_03204 0.35 +0.1 502,498 + MPMX19_03204 0.35 -0.9 502,498 + MPMX19_03204 0.35 -1.4 502,498 + MPMX19_03204 0.35 -0.7 502,498 + MPMX19_03204 0.35 -0.3 502,499 - MPMX19_03204 0.35 -1.7 502,499 - MPMX19_03204 0.35 -1.8 502,499 - MPMX19_03204 0.35 -2.3 502,499 - MPMX19_03204 0.35 +1.3 502,499 - MPMX19_03204 0.35 -2.4 502,499 - MPMX19_03204 0.35 -1.0 502,546 + MPMX19_03204 0.39 +1.1 502,546 + MPMX19_03204 0.39 +0.2 502,546 + MPMX19_03204 0.39 +0.2 502,547 - MPMX19_03204 0.39 -1.9 502,547 - MPMX19_03204 0.39 -0.4 502,598 + MPMX19_03204 0.44 -0.7 502,598 + MPMX19_03204 0.44 +0.2 502,598 + MPMX19_03204 0.44 +0.6 502,598 + MPMX19_03204 0.44 -2.3 502,598 + MPMX19_03204 0.44 -1.6 502,598 + MPMX19_03204 0.44 -0.3 502,599 - MPMX19_03204 0.44 -0.8 502,599 - MPMX19_03204 0.44 +0.1 502,599 - MPMX19_03204 0.44 -1.1 502,599 - MPMX19_03204 0.44 -0.5 502,600 + MPMX19_03204 0.44 -0.2 502,600 + MPMX19_03204 0.44 -0.1 502,601 - MPMX19_03204 0.44 -2.7 502,658 + MPMX19_03204 0.49 -0.5 502,658 + MPMX19_03204 0.49 -0.4 502,658 + MPMX19_03204 0.49 -1.7 502,658 + MPMX19_03204 0.49 +1.1 502,658 + MPMX19_03204 0.49 -1.4 502,658 + MPMX19_03204 0.49 -1.5 502,658 + MPMX19_03204 0.49 -1.5 502,659 - MPMX19_03204 0.49 -1.1 502,659 - MPMX19_03204 0.49 +0.1 502,659 - MPMX19_03204 0.49 -0.4 502,659 - MPMX19_03204 0.49 -1.0 502,745 + MPMX19_03204 0.56 -1.8 502,894 + MPMX19_03204 0.69 +0.3 502,940 + MPMX19_03204 0.73 -0.3 502,940 + MPMX19_03204 0.73 +0.6 502,941 - MPMX19_03204 0.73 -0.4 503,025 + MPMX19_03204 0.80 -1.7 503,025 + MPMX19_03204 0.80 -0.4 503,026 - MPMX19_03204 0.80 -0.4 503,026 - MPMX19_03204 0.80 -1.6 503,026 - MPMX19_03204 0.80 -1.3 503,026 - MPMX19_03204 0.80 -0.8 503,154 - +0.8 503,154 - +0.1 503,154 - +0.2 503,154 - -0.2 503,154 - +0.9 503,318 + -0.3 503,318 + -1.7 503,318 + -1.5 503,318 + +0.3 503,318 + +0.1 503,319 - -1.5 503,319 - -0.3 503,319 - +0.5 503,368 - -1.1 503,406 + -0.1 503,406 + +0.1 503,406 + +0.5 503,406 + +0.3 503,407 - +0.9 503,407 - -2.1 503,427 + -1.1 503,427 + -1.6 503,427 + +0.6 503,427 + +0.2 503,428 - +0.3 503,428 - -0.3 503,428 - -1.1 503,428 - -0.1 503,428 - -0.8 503,428 - -2.3 503,470 + -1.8 503,470 + -0.3 503,470 + -1.1 503,471 - +0.7 503,471 - -1.4 503,471 - -0.6 503,528 + -0.0 503,528 + -0.7 503,528 + -1.0 503,528 + -0.7 503,529 - -0.2 503,529 - +0.3 503,529 - -0.7 503,803 + MPMX19_03205 0.29 -2.5 504,087 - MPMX19_03205 0.56 -1.3
Or see this region's nucleotide sequence