Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03162 and MPMX19_03163 are separated by 93 nucleotides MPMX19_03163 and MPMX19_03164 are separated by 7 nucleotides MPMX19_03164 and MPMX19_03165 overlap by 1 nucleotides MPMX19_03165 and MPMX19_03166 are separated by 152 nucleotides
MPMX19_03162: MPMX19_03162 - Sensor histidine kinase RcsC, at 454,247 to 455,728
_03162
MPMX19_03163: MPMX19_03163 - hypothetical protein, at 455,822 to 456,502
_03163
MPMX19_03164: MPMX19_03164 - hypothetical protein, at 456,510 to 456,827
_03164
MPMX19_03165: MPMX19_03165 - hypothetical protein, at 456,827 to 457,066
_03165
MPMX19_03166: MPMX19_03166 - Fumarate hydratase class I, aerobic, at 457,219 to 458,844
_03166
Position (kb) 455
456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.202 kb on + strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.202 kb on + strand, within MPMX19_03162 at 455.203 kb on - strand, within MPMX19_03162 at 455.203 kb on - strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.332 kb on + strand, within MPMX19_03162 at 455.333 kb on - strand, within MPMX19_03162 at 455.373 kb on + strand, within MPMX19_03162 at 455.373 kb on + strand, within MPMX19_03162 at 455.373 kb on + strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.374 kb on - strand, within MPMX19_03162 at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.823 kb on + strand at 455.824 kb on - strand at 455.824 kb on - strand at 455.824 kb on - strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.864 kb on + strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.865 kb on - strand at 455.914 kb on - strand, within MPMX19_03163 at 455.973 kb on + strand, within MPMX19_03163 at 455.974 kb on - strand, within MPMX19_03163 at 455.974 kb on - strand, within MPMX19_03163 at 455.974 kb on - strand, within MPMX19_03163 at 456.096 kb on + strand, within MPMX19_03163 at 456.096 kb on + strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.097 kb on - strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.228 kb on + strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.229 kb on - strand, within MPMX19_03163 at 456.235 kb on + strand, within MPMX19_03163 at 456.235 kb on + strand, within MPMX19_03163 at 456.236 kb on - strand, within MPMX19_03163 at 456.236 kb on - strand, within MPMX19_03163 at 456.236 kb on - strand, within MPMX19_03163 at 456.468 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.507 kb on + strand at 456.508 kb on - strand at 456.508 kb on - strand at 456.508 kb on - strand at 456.508 kb on - strand at 456.607 kb on - strand, within MPMX19_03164 at 456.607 kb on - strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.723 kb on + strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.724 kb on - strand, within MPMX19_03164 at 456.772 kb on + strand, within MPMX19_03164 at 456.772 kb on + strand, within MPMX19_03164 at 456.772 kb on + strand, within MPMX19_03164 at 456.773 kb on - strand, within MPMX19_03164 at 456.773 kb on - strand, within MPMX19_03164 at 456.810 kb on + strand at 456.810 kb on + strand at 456.810 kb on + strand at 456.810 kb on + strand at 456.810 kb on + strand at 456.810 kb on + strand at 456.811 kb on - strand at 456.811 kb on - strand at 456.811 kb on - strand at 456.811 kb on - strand at 456.828 kb on + strand at 456.828 kb on + strand at 456.828 kb on + strand at 456.828 kb on + strand at 456.829 kb on - strand at 456.829 kb on - strand at 456.829 kb on - strand at 456.829 kb on - strand at 456.864 kb on + strand, within MPMX19_03165 at 456.864 kb on + strand, within MPMX19_03165 at 456.864 kb on + strand, within MPMX19_03165 at 456.864 kb on + strand, within MPMX19_03165 at 456.864 kb on + strand, within MPMX19_03165 at 456.864 kb on + strand, within MPMX19_03165 at 457.053 kb on + strand at 457.053 kb on + strand at 457.053 kb on + strand at 457.053 kb on + strand at 457.129 kb on + strand at 457.129 kb on + strand at 457.129 kb on + strand at 457.129 kb on + strand at 457.129 kb on + strand at 457.129 kb on + strand at 457.129 kb on + strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.130 kb on - strand at 457.404 kb on - strand, within MPMX19_03166
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 455,202 + MPMX19_03162 0.64 +0.9 455,202 + MPMX19_03162 0.64 +0.7 455,202 + MPMX19_03162 0.64 -1.1 455,202 + MPMX19_03162 0.64 -1.0 455,203 - MPMX19_03162 0.65 -0.4 455,203 - MPMX19_03162 0.65 +0.4 455,332 + MPMX19_03162 0.73 -1.0 455,332 + MPMX19_03162 0.73 -1.1 455,332 + MPMX19_03162 0.73 -0.3 455,332 + MPMX19_03162 0.73 +1.3 455,333 - MPMX19_03162 0.73 -0.6 455,373 + MPMX19_03162 0.76 -0.2 455,373 + MPMX19_03162 0.76 -1.6 455,373 + MPMX19_03162 0.76 +0.4 455,374 - MPMX19_03162 0.76 +1.1 455,374 - MPMX19_03162 0.76 +0.3 455,374 - MPMX19_03162 0.76 +0.0 455,374 - MPMX19_03162 0.76 -0.4 455,374 - MPMX19_03162 0.76 -1.0 455,823 + -0.8 455,823 + +1.2 455,823 + -0.7 455,823 + +0.5 455,823 + -0.1 455,823 + +0.6 455,824 - -0.8 455,824 - +0.3 455,824 - +1.5 455,864 + -0.4 455,864 + -0.7 455,864 + -0.7 455,864 + -0.7 455,864 + +0.2 455,864 + -0.6 455,864 + +0.7 455,864 + -1.0 455,864 + -1.7 455,865 - +0.2 455,865 - -1.8 455,865 - +0.6 455,865 - -0.8 455,865 - +0.1 455,865 - +0.4 455,865 - -0.1 455,914 - MPMX19_03163 0.14 -0.9 455,973 + MPMX19_03163 0.22 -1.1 455,974 - MPMX19_03163 0.22 +0.2 455,974 - MPMX19_03163 0.22 +0.3 455,974 - MPMX19_03163 0.22 -2.1 456,096 + MPMX19_03163 0.40 +0.0 456,096 + MPMX19_03163 0.40 -0.5 456,097 - MPMX19_03163 0.40 -0.5 456,097 - MPMX19_03163 0.40 -1.2 456,097 - MPMX19_03163 0.40 -0.9 456,097 - MPMX19_03163 0.40 -0.8 456,097 - MPMX19_03163 0.40 +0.2 456,097 - MPMX19_03163 0.40 -0.4 456,097 - MPMX19_03163 0.40 -0.6 456,097 - MPMX19_03163 0.40 -0.9 456,228 + MPMX19_03163 0.60 -1.7 456,228 + MPMX19_03163 0.60 -0.9 456,228 + MPMX19_03163 0.60 +0.3 456,228 + MPMX19_03163 0.60 +0.3 456,228 + MPMX19_03163 0.60 -0.4 456,228 + MPMX19_03163 0.60 +0.7 456,228 + MPMX19_03163 0.60 +2.5 456,228 + MPMX19_03163 0.60 -0.7 456,228 + MPMX19_03163 0.60 -1.0 456,228 + MPMX19_03163 0.60 -0.9 456,229 - MPMX19_03163 0.60 -0.3 456,229 - MPMX19_03163 0.60 +0.4 456,229 - MPMX19_03163 0.60 -0.8 456,229 - MPMX19_03163 0.60 +0.2 456,229 - MPMX19_03163 0.60 -0.6 456,229 - MPMX19_03163 0.60 -0.4 456,229 - MPMX19_03163 0.60 -0.3 456,229 - MPMX19_03163 0.60 +0.2 456,229 - MPMX19_03163 0.60 -0.9 456,229 - MPMX19_03163 0.60 +0.8 456,235 + MPMX19_03163 0.61 -1.1 456,235 + MPMX19_03163 0.61 -1.4 456,236 - MPMX19_03163 0.61 -1.2 456,236 - MPMX19_03163 0.61 -0.5 456,236 - MPMX19_03163 0.61 +0.9 456,468 + +0.1 456,507 + -0.7 456,507 + -1.2 456,507 + +0.3 456,507 + +0.3 456,507 + -0.4 456,507 + -1.1 456,507 + -0.1 456,508 - +1.3 456,508 - -1.0 456,508 - -1.3 456,508 - +0.3 456,607 - MPMX19_03164 0.31 -0.3 456,607 - MPMX19_03164 0.31 -0.4 456,723 + MPMX19_03164 0.67 +0.0 456,723 + MPMX19_03164 0.67 -1.0 456,723 + MPMX19_03164 0.67 +0.5 456,723 + MPMX19_03164 0.67 -1.8 456,723 + MPMX19_03164 0.67 -0.4 456,723 + MPMX19_03164 0.67 -0.6 456,723 + MPMX19_03164 0.67 -0.5 456,723 + MPMX19_03164 0.67 -0.1 456,723 + MPMX19_03164 0.67 -0.1 456,723 + MPMX19_03164 0.67 -0.9 456,723 + MPMX19_03164 0.67 -0.9 456,723 + MPMX19_03164 0.67 +0.3 456,724 - MPMX19_03164 0.67 +0.9 456,724 - MPMX19_03164 0.67 -0.7 456,724 - MPMX19_03164 0.67 -0.2 456,724 - MPMX19_03164 0.67 -0.6 456,724 - MPMX19_03164 0.67 -0.2 456,724 - MPMX19_03164 0.67 -0.8 456,772 + MPMX19_03164 0.82 +1.1 456,772 + MPMX19_03164 0.82 -1.3 456,772 + MPMX19_03164 0.82 +0.6 456,773 - MPMX19_03164 0.83 -1.3 456,773 - MPMX19_03164 0.83 -0.3 456,810 + -0.4 456,810 + -1.1 456,810 + +0.0 456,810 + -0.2 456,810 + -0.7 456,810 + -0.6 456,811 - -2.0 456,811 - +0.6 456,811 - +0.8 456,811 - -0.1 456,828 + +1.1 456,828 + -0.4 456,828 + -0.9 456,828 + +1.2 456,829 - -1.2 456,829 - -1.3 456,829 - -1.3 456,829 - -0.1 456,864 + MPMX19_03165 0.15 -0.4 456,864 + MPMX19_03165 0.15 -0.9 456,864 + MPMX19_03165 0.15 +1.4 456,864 + MPMX19_03165 0.15 +0.2 456,864 + MPMX19_03165 0.15 -1.0 456,864 + MPMX19_03165 0.15 -1.7 457,053 + +1.4 457,053 + -1.4 457,053 + -0.1 457,053 + -0.3 457,129 + -0.7 457,129 + -0.7 457,129 + -2.1 457,129 + -0.4 457,129 + -1.6 457,129 + -1.4 457,129 + -2.0 457,130 - -0.6 457,130 - +0.7 457,130 - +0.3 457,130 - -0.9 457,130 - +0.9 457,130 - +0.3 457,130 - -0.9 457,130 - -1.1 457,404 - MPMX19_03166 0.11 -0.4
Or see this region's nucleotide sequence