Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03115

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03113 and MPMX19_03114 overlap by 4 nucleotidesMPMX19_03114 and MPMX19_03115 overlap by 23 nucleotidesMPMX19_03115 and MPMX19_03116 are separated by 50 nucleotides MPMX19_03113: MPMX19_03113 - hypothetical protein, at 398,437 to 399,270 _03113 MPMX19_03114: MPMX19_03114 - hypothetical protein, at 399,267 to 400,196 _03114 MPMX19_03115: MPMX19_03115 - hypothetical protein, at 400,174 to 401,337 _03115 MPMX19_03116: MPMX19_03116 - Vitamin B12 import ATP-binding protein BtuD, at 401,388 to 402,500 _03116 Position (kb) 400 401 402Strain fitness (log2 ratio) -2 -1 0 1 2at 399.232 kb on + strandat 399.232 kb on + strandat 399.232 kb on + strandat 399.232 kb on + strandat 399.233 kb on - strandat 399.233 kb on - strandat 399.304 kb on + strandat 399.304 kb on + strandat 399.304 kb on + strandat 399.305 kb on - strandat 399.305 kb on - strandat 399.305 kb on - strandat 399.334 kb on + strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.367 kb on + strand, within MPMX19_03114at 399.367 kb on + strand, within MPMX19_03114at 399.391 kb on + strand, within MPMX19_03114at 399.392 kb on - strand, within MPMX19_03114at 399.805 kb on + strand, within MPMX19_03114at 399.857 kb on - strand, within MPMX19_03114at 399.940 kb on + strand, within MPMX19_03114at 399.940 kb on + strand, within MPMX19_03114at 399.940 kb on + strand, within MPMX19_03114at 399.941 kb on - strand, within MPMX19_03114at 399.941 kb on - strand, within MPMX19_03114at 400.027 kb on + strand, within MPMX19_03114at 400.028 kb on - strand, within MPMX19_03114at 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.196 kb on + strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.197 kb on - strandat 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.322 kb on + strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.323 kb on - strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.451 kb on + strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.452 kb on - strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.454 kb on + strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.455 kb on - strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.535 kb on + strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.536 kb on - strand, within MPMX19_03115at 400.689 kb on - strand, within MPMX19_03115at 400.784 kb on + strand, within MPMX19_03115at 400.784 kb on + strand, within MPMX19_03115at 400.785 kb on - strand, within MPMX19_03115at 400.785 kb on - strand, within MPMX19_03115at 400.832 kb on + strand, within MPMX19_03115at 400.832 kb on + strand, within MPMX19_03115at 400.833 kb on - strand, within MPMX19_03115at 400.833 kb on - strand, within MPMX19_03115at 400.868 kb on + strand, within MPMX19_03115at 400.869 kb on - strand, within MPMX19_03115at 400.869 kb on - strand, within MPMX19_03115at 400.869 kb on - strand, within MPMX19_03115at 400.907 kb on + strand, within MPMX19_03115at 400.908 kb on - strand, within MPMX19_03115at 400.908 kb on - strand, within MPMX19_03115at 400.908 kb on - strand, within MPMX19_03115at 400.985 kb on + strand, within MPMX19_03115at 400.985 kb on + strand, within MPMX19_03115at 400.986 kb on - strand, within MPMX19_03115at 400.986 kb on - strand, within MPMX19_03115at 401.099 kb on + strand, within MPMX19_03115at 401.099 kb on + strand, within MPMX19_03115at 401.189 kb on + strand, within MPMX19_03115at 401.189 kb on + strand, within MPMX19_03115at 401.189 kb on + strand, within MPMX19_03115at 401.190 kb on - strand, within MPMX19_03115at 401.201 kb on + strand, within MPMX19_03115at 401.202 kb on - strand, within MPMX19_03115at 401.202 kb on - strand, within MPMX19_03115at 401.836 kb on + strand, within MPMX19_03116at 401.836 kb on + strand, within MPMX19_03116at 402.209 kb on - strand, within MPMX19_03116at 402.209 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116at 402.251 kb on - strand, within MPMX19_03116

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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399,232 + -0.3
399,232 + +0.1
399,232 + -0.4
399,232 + +0.1
399,233 - -1.9
399,233 - -0.2
399,304 + -1.9
399,304 + +0.2
399,304 + +1.9
399,305 - -0.4
399,305 - -1.0
399,305 - -1.1
399,334 + +0.2
399,335 - -0.1
399,335 - -1.3
399,335 - -0.9
399,335 - -0.3
399,335 - -1.2
399,367 + MPMX19_03114 0.11 -0.3
399,367 + MPMX19_03114 0.11 +0.8
399,391 + MPMX19_03114 0.13 +0.3
399,392 - MPMX19_03114 0.13 +0.3
399,805 + MPMX19_03114 0.58 +0.9
399,857 - MPMX19_03114 0.63 +0.8
399,940 + MPMX19_03114 0.72 -0.8
399,940 + MPMX19_03114 0.72 -1.2
399,940 + MPMX19_03114 0.72 -1.2
399,941 - MPMX19_03114 0.72 -1.1
399,941 - MPMX19_03114 0.72 +0.3
400,027 + MPMX19_03114 0.82 +0.2
400,028 - MPMX19_03114 0.82 -1.9
400,196 + +0.0
400,196 + -0.2
400,196 + -0.3
400,196 + -1.0
400,196 + -0.7
400,196 + +0.2
400,196 + +0.1
400,196 + -0.4
400,197 - -0.1
400,197 - +0.5
400,197 - +1.1
400,197 - +0.7
400,197 - +0.2
400,197 - -0.6
400,197 - -0.5
400,197 - +0.8
400,322 + MPMX19_03115 0.13 +0.2
400,322 + MPMX19_03115 0.13 -0.3
400,322 + MPMX19_03115 0.13 +1.9
400,322 + MPMX19_03115 0.13 -0.3
400,322 + MPMX19_03115 0.13 -0.7
400,322 + MPMX19_03115 0.13 +0.4
400,322 + MPMX19_03115 0.13 -0.9
400,322 + MPMX19_03115 0.13 -0.6
400,323 - MPMX19_03115 0.13 -0.9
400,323 - MPMX19_03115 0.13 -0.1
400,323 - MPMX19_03115 0.13 +0.2
400,323 - MPMX19_03115 0.13 -0.9
400,323 - MPMX19_03115 0.13 -0.8
400,323 - MPMX19_03115 0.13 -2.4
400,323 - MPMX19_03115 0.13 -1.8
400,451 + MPMX19_03115 0.24 -1.4
400,451 + MPMX19_03115 0.24 +0.3
400,451 + MPMX19_03115 0.24 -1.4
400,451 + MPMX19_03115 0.24 -1.5
400,451 + MPMX19_03115 0.24 +0.2
400,451 + MPMX19_03115 0.24 -0.0
400,451 + MPMX19_03115 0.24 +0.3
400,451 + MPMX19_03115 0.24 -0.2
400,452 - MPMX19_03115 0.24 +0.7
400,452 - MPMX19_03115 0.24 -1.0
400,452 - MPMX19_03115 0.24 -0.4
400,452 - MPMX19_03115 0.24 +0.3
400,452 - MPMX19_03115 0.24 -0.3
400,452 - MPMX19_03115 0.24 -1.2
400,452 - MPMX19_03115 0.24 -1.7
400,454 + MPMX19_03115 0.24 +0.3
400,454 + MPMX19_03115 0.24 -0.1
400,454 + MPMX19_03115 0.24 +0.2
400,454 + MPMX19_03115 0.24 -1.1
400,454 + MPMX19_03115 0.24 +0.0
400,454 + MPMX19_03115 0.24 +0.2
400,454 + MPMX19_03115 0.24 +1.6
400,454 + MPMX19_03115 0.24 -1.1
400,455 - MPMX19_03115 0.24 -1.5
400,455 - MPMX19_03115 0.24 +0.7
400,455 - MPMX19_03115 0.24 -1.2
400,455 - MPMX19_03115 0.24 +0.5
400,455 - MPMX19_03115 0.24 -0.7
400,455 - MPMX19_03115 0.24 -0.7
400,535 + MPMX19_03115 0.31 -0.0
400,535 + MPMX19_03115 0.31 +0.6
400,535 + MPMX19_03115 0.31 -0.1
400,535 + MPMX19_03115 0.31 -0.1
400,535 + MPMX19_03115 0.31 -1.4
400,536 - MPMX19_03115 0.31 -1.1
400,536 - MPMX19_03115 0.31 -1.2
400,536 - MPMX19_03115 0.31 -0.7
400,536 - MPMX19_03115 0.31 +0.2
400,536 - MPMX19_03115 0.31 -0.5
400,536 - MPMX19_03115 0.31 +0.7
400,536 - MPMX19_03115 0.31 -1.2
400,536 - MPMX19_03115 0.31 -1.4
400,689 - MPMX19_03115 0.44 -0.7
400,784 + MPMX19_03115 0.52 -1.3
400,784 + MPMX19_03115 0.52 -0.3
400,785 - MPMX19_03115 0.52 -0.5
400,785 - MPMX19_03115 0.52 -0.7
400,832 + MPMX19_03115 0.57 -0.1
400,832 + MPMX19_03115 0.57 -1.5
400,833 - MPMX19_03115 0.57 -0.1
400,833 - MPMX19_03115 0.57 +0.3
400,868 + MPMX19_03115 0.60 -0.0
400,869 - MPMX19_03115 0.60 -1.2
400,869 - MPMX19_03115 0.60 +0.4
400,869 - MPMX19_03115 0.60 -0.2
400,907 + MPMX19_03115 0.63 -1.5
400,908 - MPMX19_03115 0.63 -1.0
400,908 - MPMX19_03115 0.63 +0.1
400,908 - MPMX19_03115 0.63 -0.2
400,985 + MPMX19_03115 0.70 +0.3
400,985 + MPMX19_03115 0.70 -0.7
400,986 - MPMX19_03115 0.70 -0.7
400,986 - MPMX19_03115 0.70 -0.5
401,099 + MPMX19_03115 0.79 -1.0
401,099 + MPMX19_03115 0.79 +0.3
401,189 + MPMX19_03115 0.87 -2.2
401,189 + MPMX19_03115 0.87 +0.3
401,189 + MPMX19_03115 0.87 -0.8
401,190 - MPMX19_03115 0.87 +1.4
401,201 + MPMX19_03115 0.88 +0.3
401,202 - MPMX19_03115 0.88 -0.1
401,202 - MPMX19_03115 0.88 +1.7
401,836 + MPMX19_03116 0.40 +0.3
401,836 + MPMX19_03116 0.40 -0.1
402,209 - MPMX19_03116 0.74 +0.3
402,209 - MPMX19_03116 0.74 -0.4
402,251 - MPMX19_03116 0.78 +0.8
402,251 - MPMX19_03116 0.78 +0.0
402,251 - MPMX19_03116 0.78 -0.9
402,251 - MPMX19_03116 0.78 +0.3
402,251 - MPMX19_03116 0.78 -0.6
402,251 - MPMX19_03116 0.78 -0.7
402,251 - MPMX19_03116 0.78 -0.5

Or see this region's nucleotide sequence