Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03111

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03110 and MPMX19_03111 are separated by 7 nucleotidesMPMX19_03111 and MPMX19_03112 are separated by 39 nucleotidesMPMX19_03112 and MPMX19_03113 are separated by 5 nucleotides MPMX19_03110: MPMX19_03110 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 394,735 to 395,970 _03110 MPMX19_03111: MPMX19_03111 - Putative fatty-acid--CoA ligase FadD21, at 395,978 to 397,651 _03111 MPMX19_03112: MPMX19_03112 - Ribonuclease BN, at 397,691 to 398,431 _03112 MPMX19_03113: MPMX19_03113 - hypothetical protein, at 398,437 to 399,270 _03113 Position (kb) 395 396 397 398Strain fitness (log2 ratio) -2 -1 0 1 2at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.629 kb on + strand, within MPMX19_03110at 395.630 kb on - strand, within MPMX19_03110at 395.836 kb on + strand, within MPMX19_03110at 395.837 kb on - strand, within MPMX19_03110at 395.837 kb on - strand, within MPMX19_03110at 395.837 kb on - strand, within MPMX19_03110at 396.378 kb on + strand, within MPMX19_03111at 396.378 kb on + strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.689 kb on + strand, within MPMX19_03111at 396.689 kb on + strand, within MPMX19_03111at 396.689 kb on + strand, within MPMX19_03111at 396.690 kb on - strand, within MPMX19_03111at 396.690 kb on - strand, within MPMX19_03111at 396.690 kb on - strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.932 kb on + strand, within MPMX19_03111at 397.692 kb on + strandat 397.692 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.266 kb on - strand, within MPMX19_03112at 398.266 kb on - strand, within MPMX19_03112at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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394,990 + MPMX19_03110 0.21 -1.5
394,990 + MPMX19_03110 0.21 -0.7
394,990 + MPMX19_03110 0.21 +0.2
394,990 + MPMX19_03110 0.21 -0.4
394,991 - MPMX19_03110 0.21 -1.1
394,991 - MPMX19_03110 0.21 -0.2
394,991 - MPMX19_03110 0.21 -0.7
394,991 - MPMX19_03110 0.21 -0.8
394,991 - MPMX19_03110 0.21 -0.7
395,344 + MPMX19_03110 0.49 -0.8
395,344 + MPMX19_03110 0.49 -0.4
395,344 + MPMX19_03110 0.49 -0.5
395,344 + MPMX19_03110 0.49 -0.1
395,344 + MPMX19_03110 0.49 +0.1
395,344 + MPMX19_03110 0.49 +0.7
395,344 + MPMX19_03110 0.49 -0.7
395,344 + MPMX19_03110 0.49 -0.5
395,344 + MPMX19_03110 0.49 -0.5
395,344 + MPMX19_03110 0.49 -0.7
395,344 + MPMX19_03110 0.49 -0.9
395,345 - MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.0
395,345 - MPMX19_03110 0.49 +0.3
395,345 - MPMX19_03110 0.49 -0.4
395,345 - MPMX19_03110 0.49 +1.6
395,345 - MPMX19_03110 0.49 +0.7
395,345 - MPMX19_03110 0.49 +0.4
395,629 + MPMX19_03110 0.72 -0.7
395,630 - MPMX19_03110 0.72 -0.2
395,836 + MPMX19_03110 0.89 -0.9
395,837 - MPMX19_03110 0.89 -0.9
395,837 - MPMX19_03110 0.89 +0.3
395,837 - MPMX19_03110 0.89 -1.2
396,378 + MPMX19_03111 0.24 -0.2
396,378 + MPMX19_03111 0.24 -0.3
396,379 - MPMX19_03111 0.24 -1.0
396,379 - MPMX19_03111 0.24 -0.1
396,379 - MPMX19_03111 0.24 -2.0
396,379 - MPMX19_03111 0.24 +0.2
396,551 + MPMX19_03111 0.34 -0.1
396,551 + MPMX19_03111 0.34 +1.2
396,551 + MPMX19_03111 0.34 +0.6
396,551 + MPMX19_03111 0.34 -0.7
396,552 - MPMX19_03111 0.34 -0.5
396,552 - MPMX19_03111 0.34 -1.4
396,552 - MPMX19_03111 0.34 +0.2
396,552 - MPMX19_03111 0.34 +1.3
396,552 - MPMX19_03111 0.34 -2.4
396,552 - MPMX19_03111 0.34 +1.7
396,608 + MPMX19_03111 0.38 +0.2
396,608 + MPMX19_03111 0.38 -2.5
396,608 + MPMX19_03111 0.38 -0.1
396,608 + MPMX19_03111 0.38 -1.8
396,608 + MPMX19_03111 0.38 -1.7
396,608 + MPMX19_03111 0.38 +1.4
396,609 - MPMX19_03111 0.38 +0.4
396,609 - MPMX19_03111 0.38 -0.4
396,609 - MPMX19_03111 0.38 -0.4
396,609 - MPMX19_03111 0.38 +0.3
396,609 - MPMX19_03111 0.38 +0.3
396,689 + MPMX19_03111 0.42 +0.3
396,689 + MPMX19_03111 0.42 -0.4
396,689 + MPMX19_03111 0.42 +0.1
396,690 - MPMX19_03111 0.43 +0.7
396,690 - MPMX19_03111 0.43 -0.5
396,690 - MPMX19_03111 0.43 +1.1
396,836 + MPMX19_03111 0.51 -0.5
396,836 + MPMX19_03111 0.51 -0.1
396,836 + MPMX19_03111 0.51 -0.9
396,836 + MPMX19_03111 0.51 +0.9
396,836 + MPMX19_03111 0.51 -0.1
396,837 - MPMX19_03111 0.51 -0.3
396,837 - MPMX19_03111 0.51 +1.1
396,837 - MPMX19_03111 0.51 +0.3
396,837 - MPMX19_03111 0.51 +0.3
396,932 + MPMX19_03111 0.57 +0.3
397,692 + -0.6
397,692 + +0.3
397,733 + -1.1
397,733 + -0.8
397,733 + -2.1
397,733 + -0.4
397,733 + -2.0
397,734 - +0.1
397,734 - -1.9
397,734 - +1.3
397,734 - +0.9
397,734 - -1.6
397,794 + MPMX19_03112 0.14 +0.6
397,794 + MPMX19_03112 0.14 +0.9
397,794 + MPMX19_03112 0.14 -0.5
397,794 + MPMX19_03112 0.14 -0.4
397,794 + MPMX19_03112 0.14 +0.3
397,794 + MPMX19_03112 0.14 +1.3
397,794 + MPMX19_03112 0.14 +1.3
397,794 + MPMX19_03112 0.14 +2.3
397,795 - MPMX19_03112 0.14 +0.2
397,795 - MPMX19_03112 0.14 -0.1
397,795 - MPMX19_03112 0.14 +0.2
397,795 - MPMX19_03112 0.14 +0.2
397,795 - MPMX19_03112 0.14 +0.0
397,795 - MPMX19_03112 0.14 -0.8
397,795 - MPMX19_03112 0.14 +0.2
397,795 - MPMX19_03112 0.14 -0.2
397,795 - MPMX19_03112 0.14 -1.1
398,265 + MPMX19_03112 0.77 -0.5
398,265 + MPMX19_03112 0.77 +0.3
398,265 + MPMX19_03112 0.77 +0.3
398,265 + MPMX19_03112 0.77 -0.3
398,266 - MPMX19_03112 0.78 +0.3
398,266 - MPMX19_03112 0.78 +1.3
398,615 + MPMX19_03113 0.21 +0.3
398,615 + MPMX19_03113 0.21 +0.6
398,615 + MPMX19_03113 0.21 -2.2
398,615 + MPMX19_03113 0.21 +1.8
398,615 + MPMX19_03113 0.21 -0.1
398,615 + MPMX19_03113 0.21 -0.2
398,616 - MPMX19_03113 0.21 +0.2
398,616 - MPMX19_03113 0.21 -1.2
398,616 - MPMX19_03113 0.21 -0.1
398,616 - MPMX19_03113 0.21 -1.4
398,616 - MPMX19_03113 0.21 +0.0

Or see this region's nucleotide sequence