Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03110

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03108 and MPMX19_03109 are separated by 58 nucleotidesMPMX19_03109 and MPMX19_03110 overlap by 4 nucleotidesMPMX19_03110 and MPMX19_03111 are separated by 7 nucleotides MPMX19_03108: MPMX19_03108 - hypothetical protein, at 389,083 to 394,401 _03108 MPMX19_03109: MPMX19_03109 - hypothetical protein, at 394,460 to 394,738 _03109 MPMX19_03110: MPMX19_03110 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 394,735 to 395,970 _03110 MPMX19_03111: MPMX19_03111 - Putative fatty-acid--CoA ligase FadD21, at 395,978 to 397,651 _03111 Position (kb) 394 395 396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 393.772 kb on + strand, within MPMX19_03108at 393.772 kb on + strand, within MPMX19_03108at 393.772 kb on + strand, within MPMX19_03108at 393.773 kb on - strand, within MPMX19_03108at 393.773 kb on - strand, within MPMX19_03108at 393.773 kb on - strand, within MPMX19_03108at 393.790 kb on + strand, within MPMX19_03108at 393.790 kb on + strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.791 kb on - strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.859 kb on + strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.860 kb on - strand, within MPMX19_03108at 393.910 kb on + strandat 393.976 kb on + strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 393.977 kb on - strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.006 kb on + strandat 394.007 kb on - strandat 394.007 kb on - strandat 394.007 kb on - strandat 394.007 kb on - strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.063 kb on + strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.064 kb on - strandat 394.078 kb on + strandat 394.079 kb on - strandat 394.079 kb on - strandat 394.132 kb on + strandat 394.132 kb on + strandat 394.132 kb on + strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.133 kb on - strandat 394.201 kb on + strandat 394.202 kb on - strandat 394.303 kb on - strandat 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.516 kb on + strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.517 kb on - strand, within MPMX19_03109at 394.931 kb on - strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.990 kb on + strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 394.991 kb on - strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.344 kb on + strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.345 kb on - strand, within MPMX19_03110at 395.629 kb on + strand, within MPMX19_03110at 395.630 kb on - strand, within MPMX19_03110at 395.836 kb on + strand, within MPMX19_03110at 395.837 kb on - strand, within MPMX19_03110at 395.837 kb on - strand, within MPMX19_03110at 395.837 kb on - strand, within MPMX19_03110at 396.378 kb on + strand, within MPMX19_03111at 396.378 kb on + strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.379 kb on - strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.551 kb on + strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.552 kb on - strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.608 kb on + strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.609 kb on - strand, within MPMX19_03111at 396.689 kb on + strand, within MPMX19_03111at 396.689 kb on + strand, within MPMX19_03111at 396.689 kb on + strand, within MPMX19_03111at 396.690 kb on - strand, within MPMX19_03111at 396.690 kb on - strand, within MPMX19_03111at 396.690 kb on - strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.932 kb on + strand, within MPMX19_03111

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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393,772 + MPMX19_03108 0.88 -0.8
393,772 + MPMX19_03108 0.88 -0.5
393,772 + MPMX19_03108 0.88 -0.1
393,773 - MPMX19_03108 0.88 +0.4
393,773 - MPMX19_03108 0.88 -0.3
393,773 - MPMX19_03108 0.88 -0.4
393,790 + MPMX19_03108 0.88 +0.6
393,790 + MPMX19_03108 0.88 -0.1
393,791 - MPMX19_03108 0.89 -0.5
393,791 - MPMX19_03108 0.89 -0.5
393,791 - MPMX19_03108 0.89 +0.9
393,791 - MPMX19_03108 0.89 +0.0
393,791 - MPMX19_03108 0.89 -0.9
393,791 - MPMX19_03108 0.89 +0.4
393,791 - MPMX19_03108 0.89 +0.1
393,791 - MPMX19_03108 0.89 +0.1
393,791 - MPMX19_03108 0.89 -0.3
393,791 - MPMX19_03108 0.89 +1.3
393,859 + MPMX19_03108 0.90 -0.7
393,859 + MPMX19_03108 0.90 +0.1
393,859 + MPMX19_03108 0.90 +0.3
393,859 + MPMX19_03108 0.90 +0.9
393,859 + MPMX19_03108 0.90 -0.2
393,859 + MPMX19_03108 0.90 -0.2
393,859 + MPMX19_03108 0.90 +0.1
393,859 + MPMX19_03108 0.90 -2.0
393,859 + MPMX19_03108 0.90 +1.3
393,859 + MPMX19_03108 0.90 +1.7
393,860 - MPMX19_03108 0.90 -0.3
393,860 - MPMX19_03108 0.90 -0.5
393,860 - MPMX19_03108 0.90 +0.2
393,860 - MPMX19_03108 0.90 -0.2
393,860 - MPMX19_03108 0.90 +0.6
393,860 - MPMX19_03108 0.90 +0.7
393,860 - MPMX19_03108 0.90 -1.3
393,910 + -0.2
393,976 + -0.7
393,977 - +0.9
393,977 - -0.1
393,977 - -0.7
393,977 - -0.4
394,006 + -0.8
394,006 + -0.9
394,006 + -0.9
394,006 + -0.7
394,006 + +0.3
394,006 + -0.1
394,006 + +0.6
394,006 + -0.9
394,007 - -0.4
394,007 - -1.5
394,007 - -0.5
394,007 - -2.1
394,063 + +0.3
394,063 + +0.2
394,063 + -0.9
394,063 + +0.9
394,063 + -0.2
394,063 + +0.1
394,064 - -0.8
394,064 - +2.9
394,064 - +0.6
394,064 - +0.8
394,064 - -0.2
394,078 + -1.1
394,079 - -1.7
394,079 - +0.3
394,132 + +0.8
394,132 + -0.6
394,132 + +0.1
394,133 - -0.1
394,133 - +0.5
394,133 - +0.6
394,133 - -0.3
394,133 - +0.6
394,133 - -1.2
394,133 - -0.4
394,133 - +0.3
394,201 + +0.4
394,202 - +0.6
394,303 - -0.7
394,516 + MPMX19_03109 0.20 +0.3
394,516 + MPMX19_03109 0.20 +0.9
394,516 + MPMX19_03109 0.20 +0.8
394,516 + MPMX19_03109 0.20 +1.2
394,516 + MPMX19_03109 0.20 -0.5
394,517 - MPMX19_03109 0.20 -0.4
394,517 - MPMX19_03109 0.20 +0.3
394,517 - MPMX19_03109 0.20 -0.5
394,517 - MPMX19_03109 0.20 +0.1
394,517 - MPMX19_03109 0.20 -0.1
394,931 - MPMX19_03110 0.16 -1.7
394,990 + MPMX19_03110 0.21 -1.5
394,990 + MPMX19_03110 0.21 -0.7
394,990 + MPMX19_03110 0.21 +0.2
394,990 + MPMX19_03110 0.21 -0.4
394,991 - MPMX19_03110 0.21 -1.1
394,991 - MPMX19_03110 0.21 -0.2
394,991 - MPMX19_03110 0.21 -0.7
394,991 - MPMX19_03110 0.21 -0.8
394,991 - MPMX19_03110 0.21 -0.7
395,344 + MPMX19_03110 0.49 -0.8
395,344 + MPMX19_03110 0.49 -0.4
395,344 + MPMX19_03110 0.49 -0.5
395,344 + MPMX19_03110 0.49 -0.1
395,344 + MPMX19_03110 0.49 +0.1
395,344 + MPMX19_03110 0.49 +0.7
395,344 + MPMX19_03110 0.49 -0.7
395,344 + MPMX19_03110 0.49 -0.5
395,344 + MPMX19_03110 0.49 -0.5
395,344 + MPMX19_03110 0.49 -0.7
395,344 + MPMX19_03110 0.49 -0.9
395,345 - MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.7
395,345 - MPMX19_03110 0.49 -0.0
395,345 - MPMX19_03110 0.49 +0.3
395,345 - MPMX19_03110 0.49 -0.4
395,345 - MPMX19_03110 0.49 +1.6
395,345 - MPMX19_03110 0.49 +0.7
395,345 - MPMX19_03110 0.49 +0.4
395,629 + MPMX19_03110 0.72 -0.7
395,630 - MPMX19_03110 0.72 -0.2
395,836 + MPMX19_03110 0.89 -0.9
395,837 - MPMX19_03110 0.89 -0.9
395,837 - MPMX19_03110 0.89 +0.3
395,837 - MPMX19_03110 0.89 -1.2
396,378 + MPMX19_03111 0.24 -0.2
396,378 + MPMX19_03111 0.24 -0.3
396,379 - MPMX19_03111 0.24 -1.0
396,379 - MPMX19_03111 0.24 -0.1
396,379 - MPMX19_03111 0.24 -2.0
396,379 - MPMX19_03111 0.24 +0.2
396,551 + MPMX19_03111 0.34 -0.1
396,551 + MPMX19_03111 0.34 +1.2
396,551 + MPMX19_03111 0.34 +0.6
396,551 + MPMX19_03111 0.34 -0.7
396,552 - MPMX19_03111 0.34 -0.5
396,552 - MPMX19_03111 0.34 -1.4
396,552 - MPMX19_03111 0.34 +0.2
396,552 - MPMX19_03111 0.34 +1.3
396,552 - MPMX19_03111 0.34 -2.4
396,552 - MPMX19_03111 0.34 +1.7
396,608 + MPMX19_03111 0.38 +0.2
396,608 + MPMX19_03111 0.38 -2.5
396,608 + MPMX19_03111 0.38 -0.1
396,608 + MPMX19_03111 0.38 -1.8
396,608 + MPMX19_03111 0.38 -1.7
396,608 + MPMX19_03111 0.38 +1.4
396,609 - MPMX19_03111 0.38 +0.4
396,609 - MPMX19_03111 0.38 -0.4
396,609 - MPMX19_03111 0.38 -0.4
396,609 - MPMX19_03111 0.38 +0.3
396,609 - MPMX19_03111 0.38 +0.3
396,689 + MPMX19_03111 0.42 +0.3
396,689 + MPMX19_03111 0.42 -0.4
396,689 + MPMX19_03111 0.42 +0.1
396,690 - MPMX19_03111 0.43 +0.7
396,690 - MPMX19_03111 0.43 -0.5
396,690 - MPMX19_03111 0.43 +1.1
396,836 + MPMX19_03111 0.51 -0.5
396,836 + MPMX19_03111 0.51 -0.1
396,836 + MPMX19_03111 0.51 -0.9
396,836 + MPMX19_03111 0.51 +0.9
396,836 + MPMX19_03111 0.51 -0.1
396,837 - MPMX19_03111 0.51 -0.3
396,837 - MPMX19_03111 0.51 +1.1
396,837 - MPMX19_03111 0.51 +0.3
396,837 - MPMX19_03111 0.51 +0.3
396,932 + MPMX19_03111 0.57 +0.3

Or see this region's nucleotide sequence