Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03082 and MPMX19_03083 are separated by 235 nucleotides MPMX19_03083 and MPMX19_03084 are separated by 92 nucleotides MPMX19_03084 and MPMX19_03085 are separated by 123 nucleotides
MPMX19_03082: MPMX19_03082 - ECF RNA polymerase sigma factor SigE, at 351,283 to 351,807
_03082
MPMX19_03083: MPMX19_03083 - hypothetical protein, at 352,043 to 352,249
_03083
MPMX19_03084: MPMX19_03084 - Catalase-peroxidase, at 352,342 to 354,573
_03084
MPMX19_03085: MPMX19_03085 - Hydrogen peroxide-inducible genes activator, at 354,697 to 355,593
_03085
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -2
-1
0
1
2 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.344 kb on + strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.345 kb on - strand, within MPMX19_03082 at 351.392 kb on + strand, within MPMX19_03082 at 351.393 kb on - strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.413 kb on + strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.414 kb on - strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.614 kb on + strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.615 kb on - strand, within MPMX19_03082 at 351.789 kb on + strand at 351.789 kb on + strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.790 kb on - strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.936 kb on + strand at 351.939 kb on - strand at 351.953 kb on + strand at 351.972 kb on - strand at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.167 kb on + strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.168 kb on - strand, within MPMX19_03083 at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.262 kb on + strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.263 kb on - strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.445 kb on + strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.446 kb on - strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.547 kb on + strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.548 kb on - strand at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.793 kb on + strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 352.794 kb on - strand, within MPMX19_03084 at 353.304 kb on - strand, within MPMX19_03084 at 353.411 kb on + strand, within MPMX19_03084 at 353.412 kb on - strand, within MPMX19_03084 at 353.412 kb on - strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.891 kb on + strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.892 kb on - strand, within MPMX19_03084 at 353.948 kb on + strand, within MPMX19_03084 at 354.113 kb on + strand, within MPMX19_03084 at 354.113 kb on + strand, within MPMX19_03084 at 354.114 kb on - strand, within MPMX19_03084 at 354.114 kb on - strand, within MPMX19_03084 at 354.114 kb on - strand, within MPMX19_03084 at 354.239 kb on + strand, within MPMX19_03084 at 354.239 kb on + strand, within MPMX19_03084 at 354.240 kb on - strand, within MPMX19_03084 at 354.240 kb on - strand, within MPMX19_03084 at 354.284 kb on + strand, within MPMX19_03084 at 354.285 kb on - strand, within MPMX19_03084 at 354.387 kb on - strand at 354.387 kb on - strand at 354.696 kb on + strand at 354.696 kb on + strand at 354.696 kb on + strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.697 kb on - strand at 354.733 kb on + strand at 354.733 kb on + strand at 354.733 kb on + strand at 354.734 kb on - strand at 355.021 kb on + strand, within MPMX19_03085 at 355.021 kb on + strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085 at 355.022 kb on - strand, within MPMX19_03085
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 351,344 + MPMX19_03082 0.12 -0.4 351,344 + MPMX19_03082 0.12 +0.2 351,344 + MPMX19_03082 0.12 -0.1 351,344 + MPMX19_03082 0.12 -0.1 351,344 + MPMX19_03082 0.12 -1.2 351,344 + MPMX19_03082 0.12 +1.3 351,344 + MPMX19_03082 0.12 -0.1 351,345 - MPMX19_03082 0.12 -0.2 351,345 - MPMX19_03082 0.12 +0.7 351,392 + MPMX19_03082 0.21 -2.2 351,393 - MPMX19_03082 0.21 -1.2 351,413 + MPMX19_03082 0.25 -0.1 351,413 + MPMX19_03082 0.25 +0.4 351,413 + MPMX19_03082 0.25 +0.4 351,413 + MPMX19_03082 0.25 -0.5 351,413 + MPMX19_03082 0.25 -0.3 351,413 + MPMX19_03082 0.25 -2.7 351,413 + MPMX19_03082 0.25 -0.1 351,413 + MPMX19_03082 0.25 -0.5 351,413 + MPMX19_03082 0.25 -0.2 351,413 + MPMX19_03082 0.25 -1.2 351,413 + MPMX19_03082 0.25 +0.4 351,414 - MPMX19_03082 0.25 -0.4 351,414 - MPMX19_03082 0.25 +0.4 351,414 - MPMX19_03082 0.25 -1.1 351,414 - MPMX19_03082 0.25 +0.0 351,414 - MPMX19_03082 0.25 +0.8 351,414 - MPMX19_03082 0.25 +0.7 351,414 - MPMX19_03082 0.25 -0.1 351,614 + MPMX19_03082 0.63 -0.5 351,614 + MPMX19_03082 0.63 -1.4 351,614 + MPMX19_03082 0.63 +0.6 351,614 + MPMX19_03082 0.63 +1.5 351,614 + MPMX19_03082 0.63 +0.8 351,615 - MPMX19_03082 0.63 -1.5 351,615 - MPMX19_03082 0.63 -0.5 351,615 - MPMX19_03082 0.63 -1.2 351,615 - MPMX19_03082 0.63 -1.1 351,615 - MPMX19_03082 0.63 -1.2 351,615 - MPMX19_03082 0.63 -0.9 351,615 - MPMX19_03082 0.63 -1.6 351,615 - MPMX19_03082 0.63 -1.2 351,615 - MPMX19_03082 0.63 +0.6 351,789 + -1.1 351,789 + +0.8 351,790 - +0.7 351,790 - +0.7 351,790 - -0.5 351,790 - -1.5 351,790 - -0.0 351,936 + -0.5 351,936 + +0.0 351,936 + -0.2 351,936 + +0.1 351,936 + +0.8 351,936 + -0.8 351,936 + -1.7 351,939 - +0.4 351,953 + -1.6 351,972 - -0.2 352,167 + MPMX19_03083 0.60 -0.6 352,167 + MPMX19_03083 0.60 -1.1 352,167 + MPMX19_03083 0.60 +0.4 352,167 + MPMX19_03083 0.60 -1.2 352,168 - MPMX19_03083 0.60 -0.6 352,168 - MPMX19_03083 0.60 +0.8 352,168 - MPMX19_03083 0.60 -0.9 352,168 - MPMX19_03083 0.60 +0.3 352,168 - MPMX19_03083 0.60 +0.2 352,262 + -1.1 352,262 + +0.3 352,262 + -0.4 352,262 + +0.7 352,262 + +0.3 352,262 + -1.1 352,262 + -1.2 352,262 + +0.9 352,262 + -0.5 352,262 + -0.4 352,262 + -0.5 352,262 + -0.7 352,262 + -0.6 352,262 + -0.9 352,262 + -0.2 352,262 + -1.6 352,262 + -1.9 352,262 + -1.1 352,262 + -0.6 352,262 + -0.1 352,262 + +1.5 352,263 - -0.4 352,263 - -0.4 352,263 - +0.6 352,263 - +0.4 352,263 - +0.9 352,263 - +0.5 352,263 - -0.4 352,263 - +0.1 352,263 - +0.5 352,263 - +0.1 352,263 - -0.4 352,263 - -0.2 352,263 - +0.0 352,445 + -0.6 352,445 + -0.0 352,445 + +1.6 352,445 + -0.2 352,445 + +0.3 352,445 + +0.9 352,445 + -0.4 352,445 + -0.2 352,445 + -0.4 352,445 + -1.6 352,445 + -0.9 352,445 + -0.1 352,445 + -0.1 352,445 + +0.4 352,445 + -0.6 352,445 + +0.1 352,445 + -0.9 352,446 - -0.1 352,446 - -1.8 352,446 - -0.5 352,446 - -0.6 352,446 - -0.6 352,446 - -1.2 352,446 - +0.6 352,446 - -0.3 352,446 - -1.5 352,446 - -0.1 352,446 - +0.1 352,446 - -0.1 352,446 - +0.1 352,446 - -0.6 352,446 - -0.9 352,547 + +0.7 352,547 + -0.1 352,547 + -0.9 352,547 + -0.4 352,547 + +0.6 352,547 + +1.4 352,547 + +0.4 352,547 + -2.2 352,547 + +0.3 352,548 - -0.3 352,548 - -0.4 352,548 - -2.5 352,548 - +0.9 352,548 - -0.5 352,548 - -0.6 352,548 - -0.4 352,548 - +1.4 352,548 - -0.4 352,793 + MPMX19_03084 0.20 +0.7 352,793 + MPMX19_03084 0.20 +0.5 352,793 + MPMX19_03084 0.20 +0.1 352,793 + MPMX19_03084 0.20 -0.1 352,793 + MPMX19_03084 0.20 -1.1 352,793 + MPMX19_03084 0.20 +0.1 352,793 + MPMX19_03084 0.20 +1.1 352,793 + MPMX19_03084 0.20 +0.3 352,793 + MPMX19_03084 0.20 +0.8 352,793 + MPMX19_03084 0.20 +0.4 352,793 + MPMX19_03084 0.20 -1.0 352,793 + MPMX19_03084 0.20 -1.6 352,793 + MPMX19_03084 0.20 +0.7 352,793 + MPMX19_03084 0.20 -0.1 352,793 + MPMX19_03084 0.20 -0.1 352,793 + MPMX19_03084 0.20 -0.2 352,793 + MPMX19_03084 0.20 +0.8 352,793 + MPMX19_03084 0.20 +0.1 352,794 - MPMX19_03084 0.20 +1.1 352,794 - MPMX19_03084 0.20 -0.6 352,794 - MPMX19_03084 0.20 -0.5 352,794 - MPMX19_03084 0.20 +0.5 352,794 - MPMX19_03084 0.20 -1.2 352,794 - MPMX19_03084 0.20 -0.7 353,304 - MPMX19_03084 0.43 -0.2 353,411 + MPMX19_03084 0.48 +1.1 353,412 - MPMX19_03084 0.48 -2.5 353,412 - MPMX19_03084 0.48 +0.9 353,891 + MPMX19_03084 0.69 -0.6 353,891 + MPMX19_03084 0.69 +0.5 353,891 + MPMX19_03084 0.69 +0.7 353,891 + MPMX19_03084 0.69 -0.6 353,891 + MPMX19_03084 0.69 -0.4 353,891 + MPMX19_03084 0.69 +0.8 353,891 + MPMX19_03084 0.69 +0.1 353,891 + MPMX19_03084 0.69 -0.6 353,891 + MPMX19_03084 0.69 +0.1 353,891 + MPMX19_03084 0.69 +0.3 353,892 - MPMX19_03084 0.69 -0.2 353,892 - MPMX19_03084 0.69 +0.1 353,892 - MPMX19_03084 0.69 +0.1 353,892 - MPMX19_03084 0.69 -0.8 353,892 - MPMX19_03084 0.69 +0.1 353,892 - MPMX19_03084 0.69 -0.5 353,948 + MPMX19_03084 0.72 -0.4 354,113 + MPMX19_03084 0.79 -1.1 354,113 + MPMX19_03084 0.79 -0.3 354,114 - MPMX19_03084 0.79 -1.2 354,114 - MPMX19_03084 0.79 +0.4 354,114 - MPMX19_03084 0.79 -0.3 354,239 + MPMX19_03084 0.85 -0.9 354,239 + MPMX19_03084 0.85 +1.9 354,240 - MPMX19_03084 0.85 -0.2 354,240 - MPMX19_03084 0.85 -0.7 354,284 + MPMX19_03084 0.87 +0.3 354,285 - MPMX19_03084 0.87 -1.2 354,387 - +0.1 354,387 - +0.1 354,696 + +0.1 354,696 + +0.4 354,696 + +0.0 354,697 - -2.2 354,697 - +0.1 354,697 - +1.0 354,697 - -0.2 354,697 - -0.8 354,733 + -1.1 354,733 + -0.8 354,733 + +0.4 354,734 - +0.4 355,021 + MPMX19_03085 0.36 -1.6 355,021 + MPMX19_03085 0.36 -0.6 355,022 - MPMX19_03085 0.36 -1.0 355,022 - MPMX19_03085 0.36 -0.4 355,022 - MPMX19_03085 0.36 +0.5 355,022 - MPMX19_03085 0.36 -1.3
Or see this region's nucleotide sequence