Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03074

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03072 and MPMX19_03073 are separated by 39 nucleotidesMPMX19_03073 and MPMX19_03074 are separated by 154 nucleotidesMPMX19_03074 and MPMX19_03075 are separated by 91 nucleotides MPMX19_03072: MPMX19_03072 - hypothetical protein, at 337,763 to 337,870 _03072 MPMX19_03073: MPMX19_03073 - hypothetical protein, at 337,910 to 338,584 _03073 MPMX19_03074: MPMX19_03074 - Vitamin B12 transporter BtuB, at 338,739 to 340,796 _03074 MPMX19_03075: MPMX19_03075 - hypothetical protein, at 340,888 to 342,252 _03075 Position (kb) 338 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 337.771 kb on + strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.772 kb on - strandat 337.777 kb on + strand, within MPMX19_03072at 337.777 kb on + strand, within MPMX19_03072at 337.778 kb on - strand, within MPMX19_03072at 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.868 kb on + strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.869 kb on - strandat 337.879 kb on + strandat 337.879 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.928 kb on + strandat 337.929 kb on - strandat 337.929 kb on - strandat 337.972 kb on + strandat 338.027 kb on + strand, within MPMX19_03073at 338.027 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.465 kb on + strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.466 kb on - strand, within MPMX19_03073at 338.723 kb on + strandat 338.763 kb on - strandat 339.027 kb on + strand, within MPMX19_03074at 339.027 kb on + strand, within MPMX19_03074at 339.027 kb on + strand, within MPMX19_03074at 339.027 kb on + strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.028 kb on - strand, within MPMX19_03074at 339.029 kb on + strand, within MPMX19_03074at 339.030 kb on - strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.084 kb on + strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.085 kb on - strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.162 kb on + strand, within MPMX19_03074at 339.163 kb on - strand, within MPMX19_03074at 339.303 kb on + strand, within MPMX19_03074at 339.303 kb on + strand, within MPMX19_03074at 339.303 kb on + strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.304 kb on - strand, within MPMX19_03074at 339.336 kb on + strand, within MPMX19_03074at 339.336 kb on + strand, within MPMX19_03074at 339.336 kb on + strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.337 kb on - strand, within MPMX19_03074at 339.499 kb on - strand, within MPMX19_03074at 339.499 kb on - strand, within MPMX19_03074at 339.499 kb on - strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.576 kb on + strand, within MPMX19_03074at 339.577 kb on - strand, within MPMX19_03074at 339.577 kb on - strand, within MPMX19_03074at 339.592 kb on - strand, within MPMX19_03074at 339.592 kb on - strand, within MPMX19_03074at 339.612 kb on + strand, within MPMX19_03074at 339.612 kb on + strand, within MPMX19_03074at 339.612 kb on + strand, within MPMX19_03074at 339.612 kb on + strand, within MPMX19_03074at 339.613 kb on - strand, within MPMX19_03074at 339.613 kb on - strand, within MPMX19_03074at 339.613 kb on - strand, within MPMX19_03074at 339.613 kb on - strand, within MPMX19_03074at 339.649 kb on - strand, within MPMX19_03074at 339.649 kb on - strand, within MPMX19_03074at 339.666 kb on + strand, within MPMX19_03074at 339.667 kb on - strand, within MPMX19_03074at 339.669 kb on + strand, within MPMX19_03074at 339.669 kb on + strand, within MPMX19_03074at 339.669 kb on + strand, within MPMX19_03074at 339.669 kb on + strand, within MPMX19_03074at 339.669 kb on + strand, within MPMX19_03074at 339.669 kb on + strand, within MPMX19_03074at 339.670 kb on - strand, within MPMX19_03074at 339.670 kb on - strand, within MPMX19_03074at 339.670 kb on - strand, within MPMX19_03074at 339.670 kb on - strand, within MPMX19_03074at 339.670 kb on - strand, within MPMX19_03074at 339.670 kb on - strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.693 kb on + strand, within MPMX19_03074at 339.694 kb on - strand, within MPMX19_03074at 339.750 kb on + strand, within MPMX19_03074at 339.750 kb on + strand, within MPMX19_03074at 339.750 kb on + strand, within MPMX19_03074at 339.750 kb on + strand, within MPMX19_03074at 339.750 kb on + strand, within MPMX19_03074at 339.750 kb on + strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.751 kb on - strand, within MPMX19_03074at 339.753 kb on + strand, within MPMX19_03074at 339.754 kb on - strand, within MPMX19_03074at 339.754 kb on - strand, within MPMX19_03074at 339.754 kb on - strand, within MPMX19_03074at 339.754 kb on - strand, within MPMX19_03074at 339.754 kb on - strand, within MPMX19_03074at 339.768 kb on + strand, within MPMX19_03074at 339.768 kb on + strand, within MPMX19_03074at 339.768 kb on + strand, within MPMX19_03074at 339.769 kb on - strand, within MPMX19_03074at 339.769 kb on - strand, within MPMX19_03074at 339.769 kb on - strand, within MPMX19_03074at 339.871 kb on - strand, within MPMX19_03074at 340.050 kb on + strand, within MPMX19_03074at 340.050 kb on + strand, within MPMX19_03074at 340.051 kb on - strand, within MPMX19_03074at 340.051 kb on - strand, within MPMX19_03074at 340.098 kb on + strand, within MPMX19_03074at 340.099 kb on - strand, within MPMX19_03074at 340.099 kb on - strand, within MPMX19_03074at 340.099 kb on - strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.236 kb on + strand, within MPMX19_03074at 340.237 kb on - strand, within MPMX19_03074at 340.237 kb on - strand, within MPMX19_03074at 340.237 kb on - strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.446 kb on + strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.447 kb on - strand, within MPMX19_03074at 340.641 kb on + strandat 340.641 kb on + strandat 340.641 kb on + strandat 340.642 kb on - strandat 340.668 kb on + strandat 340.668 kb on + strandat 340.668 kb on + strandat 340.669 kb on - strandat 340.669 kb on - strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.728 kb on + strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.729 kb on - strandat 340.812 kb on + strandat 340.812 kb on + strandat 340.812 kb on + strandat 340.813 kb on - strandat 340.813 kb on - strandat 340.849 kb on + strandat 340.851 kb on + strandat 340.863 kb on + strandat 340.865 kb on + strandat 340.889 kb on + strandat 340.890 kb on - strandat 341.027 kb on + strand, within MPMX19_03075at 341.027 kb on + strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.028 kb on - strand, within MPMX19_03075at 341.164 kb on - strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.388 kb on + strand, within MPMX19_03075at 341.389 kb on - strand, within MPMX19_03075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
337,771 + -2.5
337,772 - -0.5
337,772 - -0.2
337,772 - +0.4
337,777 + MPMX19_03072 0.13 -1.6
337,777 + MPMX19_03072 0.13 +0.5
337,778 - MPMX19_03072 0.14 +0.4
337,868 + -0.9
337,868 + -0.1
337,868 + +0.7
337,868 + -0.4
337,868 + +0.3
337,869 - +0.5
337,869 - -0.6
337,869 - -0.6
337,879 + -0.9
337,879 + +0.4
337,928 + -1.7
337,928 + +0.2
337,928 + +0.1
337,928 + +0.1
337,928 + -0.4
337,929 - -2.1
337,929 - +0.6
337,972 + -0.3
338,027 + MPMX19_03073 0.17 -0.1
338,027 + MPMX19_03073 0.17 +1.4
338,465 + MPMX19_03073 0.82 +0.5
338,465 + MPMX19_03073 0.82 -0.8
338,465 + MPMX19_03073 0.82 +1.7
338,466 - MPMX19_03073 0.82 -0.4
338,466 - MPMX19_03073 0.82 -0.6
338,466 - MPMX19_03073 0.82 +0.1
338,723 + -0.6
338,763 - -1.3
339,027 + MPMX19_03074 0.14 -1.8
339,027 + MPMX19_03074 0.14 -1.1
339,027 + MPMX19_03074 0.14 +0.1
339,027 + MPMX19_03074 0.14 -0.7
339,028 - MPMX19_03074 0.14 +0.8
339,028 - MPMX19_03074 0.14 +1.4
339,028 - MPMX19_03074 0.14 -0.2
339,028 - MPMX19_03074 0.14 +0.8
339,029 + MPMX19_03074 0.14 -0.9
339,030 - MPMX19_03074 0.14 +0.4
339,084 + MPMX19_03074 0.17 +0.6
339,084 + MPMX19_03074 0.17 -0.3
339,084 + MPMX19_03074 0.17 +0.4
339,084 + MPMX19_03074 0.17 +0.7
339,084 + MPMX19_03074 0.17 +0.4
339,084 + MPMX19_03074 0.17 -1.1
339,084 + MPMX19_03074 0.17 -2.3
339,085 - MPMX19_03074 0.17 +0.8
339,085 - MPMX19_03074 0.17 -2.4
339,085 - MPMX19_03074 0.17 +1.7
339,085 - MPMX19_03074 0.17 +0.2
339,085 - MPMX19_03074 0.17 -1.7
339,085 - MPMX19_03074 0.17 +0.9
339,162 + MPMX19_03074 0.21 -0.9
339,162 + MPMX19_03074 0.21 +0.9
339,162 + MPMX19_03074 0.21 +0.8
339,162 + MPMX19_03074 0.21 +0.1
339,163 - MPMX19_03074 0.21 +0.1
339,303 + MPMX19_03074 0.27 -0.2
339,303 + MPMX19_03074 0.27 -1.1
339,303 + MPMX19_03074 0.27 -1.4
339,304 - MPMX19_03074 0.27 +0.9
339,304 - MPMX19_03074 0.27 -0.2
339,304 - MPMX19_03074 0.27 -0.6
339,304 - MPMX19_03074 0.27 -1.2
339,304 - MPMX19_03074 0.27 -0.2
339,336 + MPMX19_03074 0.29 +0.4
339,336 + MPMX19_03074 0.29 +0.9
339,336 + MPMX19_03074 0.29 -0.6
339,337 - MPMX19_03074 0.29 +0.4
339,337 - MPMX19_03074 0.29 -0.1
339,337 - MPMX19_03074 0.29 +0.9
339,337 - MPMX19_03074 0.29 +0.1
339,337 - MPMX19_03074 0.29 -1.6
339,337 - MPMX19_03074 0.29 -0.4
339,499 - MPMX19_03074 0.37 -2.2
339,499 - MPMX19_03074 0.37 +0.2
339,499 - MPMX19_03074 0.37 +0.1
339,576 + MPMX19_03074 0.41 -0.9
339,576 + MPMX19_03074 0.41 -0.2
339,576 + MPMX19_03074 0.41 +0.2
339,576 + MPMX19_03074 0.41 -0.6
339,577 - MPMX19_03074 0.41 -0.5
339,577 - MPMX19_03074 0.41 -0.3
339,592 - MPMX19_03074 0.41 -1.6
339,592 - MPMX19_03074 0.41 -0.4
339,612 + MPMX19_03074 0.42 -1.8
339,612 + MPMX19_03074 0.42 -0.9
339,612 + MPMX19_03074 0.42 +0.6
339,612 + MPMX19_03074 0.42 +1.9
339,613 - MPMX19_03074 0.42 +1.3
339,613 - MPMX19_03074 0.42 +0.4
339,613 - MPMX19_03074 0.42 +0.6
339,613 - MPMX19_03074 0.42 -1.2
339,649 - MPMX19_03074 0.44 -0.2
339,649 - MPMX19_03074 0.44 -0.1
339,666 + MPMX19_03074 0.45 -1.6
339,667 - MPMX19_03074 0.45 -1.2
339,669 + MPMX19_03074 0.45 -1.0
339,669 + MPMX19_03074 0.45 -1.3
339,669 + MPMX19_03074 0.45 -0.2
339,669 + MPMX19_03074 0.45 +0.4
339,669 + MPMX19_03074 0.45 -0.3
339,669 + MPMX19_03074 0.45 +1.3
339,670 - MPMX19_03074 0.45 -0.8
339,670 - MPMX19_03074 0.45 -1.8
339,670 - MPMX19_03074 0.45 -1.9
339,670 - MPMX19_03074 0.45 +0.3
339,670 - MPMX19_03074 0.45 -2.2
339,670 - MPMX19_03074 0.45 +1.1
339,693 + MPMX19_03074 0.46 -0.1
339,693 + MPMX19_03074 0.46 -0.2
339,693 + MPMX19_03074 0.46 +0.4
339,693 + MPMX19_03074 0.46 -0.1
339,693 + MPMX19_03074 0.46 -0.9
339,693 + MPMX19_03074 0.46 -0.4
339,693 + MPMX19_03074 0.46 -1.1
339,694 - MPMX19_03074 0.46 +0.0
339,750 + MPMX19_03074 0.49 -0.8
339,750 + MPMX19_03074 0.49 -0.7
339,750 + MPMX19_03074 0.49 +0.1
339,750 + MPMX19_03074 0.49 +0.2
339,750 + MPMX19_03074 0.49 -1.5
339,750 + MPMX19_03074 0.49 -1.6
339,751 - MPMX19_03074 0.49 +0.7
339,751 - MPMX19_03074 0.49 -0.8
339,751 - MPMX19_03074 0.49 -1.1
339,751 - MPMX19_03074 0.49 -1.4
339,751 - MPMX19_03074 0.49 -0.6
339,751 - MPMX19_03074 0.49 +0.4
339,751 - MPMX19_03074 0.49 -0.3
339,751 - MPMX19_03074 0.49 +0.1
339,751 - MPMX19_03074 0.49 -0.1
339,751 - MPMX19_03074 0.49 -0.1
339,751 - MPMX19_03074 0.49 -1.8
339,753 + MPMX19_03074 0.49 +0.1
339,754 - MPMX19_03074 0.49 -1.1
339,754 - MPMX19_03074 0.49 -0.3
339,754 - MPMX19_03074 0.49 +0.9
339,754 - MPMX19_03074 0.49 +0.2
339,754 - MPMX19_03074 0.49 -1.4
339,768 + MPMX19_03074 0.50 +0.8
339,768 + MPMX19_03074 0.50 -0.3
339,768 + MPMX19_03074 0.50 -1.2
339,769 - MPMX19_03074 0.50 -1.1
339,769 - MPMX19_03074 0.50 -1.6
339,769 - MPMX19_03074 0.50 -0.1
339,871 - MPMX19_03074 0.55 +1.9
340,050 + MPMX19_03074 0.64 -0.6
340,050 + MPMX19_03074 0.64 -1.8
340,051 - MPMX19_03074 0.64 +0.8
340,051 - MPMX19_03074 0.64 -1.0
340,098 + MPMX19_03074 0.66 +0.2
340,099 - MPMX19_03074 0.66 -0.3
340,099 - MPMX19_03074 0.66 -1.1
340,099 - MPMX19_03074 0.66 -0.6
340,236 + MPMX19_03074 0.73 -0.9
340,236 + MPMX19_03074 0.73 +0.0
340,236 + MPMX19_03074 0.73 -0.1
340,236 + MPMX19_03074 0.73 -0.9
340,236 + MPMX19_03074 0.73 -1.6
340,237 - MPMX19_03074 0.73 +0.5
340,237 - MPMX19_03074 0.73 -2.6
340,237 - MPMX19_03074 0.73 -1.7
340,446 + MPMX19_03074 0.83 +0.4
340,446 + MPMX19_03074 0.83 -1.0
340,446 + MPMX19_03074 0.83 +0.9
340,446 + MPMX19_03074 0.83 -0.7
340,446 + MPMX19_03074 0.83 -0.6
340,446 + MPMX19_03074 0.83 -1.0
340,446 + MPMX19_03074 0.83 -1.3
340,446 + MPMX19_03074 0.83 -0.2
340,446 + MPMX19_03074 0.83 -0.4
340,446 + MPMX19_03074 0.83 +0.5
340,446 + MPMX19_03074 0.83 +0.4
340,446 + MPMX19_03074 0.83 +0.1
340,446 + MPMX19_03074 0.83 -1.4
340,446 + MPMX19_03074 0.83 -1.1
340,446 + MPMX19_03074 0.83 -2.5
340,447 - MPMX19_03074 0.83 -1.0
340,447 - MPMX19_03074 0.83 -1.1
340,447 - MPMX19_03074 0.83 -1.0
340,447 - MPMX19_03074 0.83 +0.4
340,447 - MPMX19_03074 0.83 -0.3
340,641 + -0.5
340,641 + +0.6
340,641 + -0.1
340,642 - -2.1
340,668 + +0.4
340,668 + -0.7
340,668 + +0.3
340,669 - +0.7
340,669 - -0.9
340,728 + -0.6
340,728 + -0.2
340,728 + -2.0
340,728 + -0.4
340,728 + -0.5
340,729 - +0.6
340,729 - +0.1
340,729 - -1.9
340,729 - +0.1
340,729 - -0.4
340,729 - -1.1
340,812 + +0.8
340,812 + -0.2
340,812 + +0.6
340,813 - -0.9
340,813 - -0.1
340,849 + -0.1
340,851 + -0.2
340,863 + +1.2
340,865 + -0.5
340,889 + -0.1
340,890 - -0.2
341,027 + MPMX19_03075 0.10 -0.9
341,027 + MPMX19_03075 0.10 -0.4
341,028 - MPMX19_03075 0.10 -0.1
341,028 - MPMX19_03075 0.10 +1.4
341,028 - MPMX19_03075 0.10 +0.0
341,028 - MPMX19_03075 0.10 -0.8
341,028 - MPMX19_03075 0.10 -1.8
341,028 - MPMX19_03075 0.10 -1.1
341,164 - MPMX19_03075 0.20 +1.1
341,333 + MPMX19_03075 0.33 -0.9
341,333 + MPMX19_03075 0.33 -0.4
341,333 + MPMX19_03075 0.33 +0.2
341,333 + MPMX19_03075 0.33 -1.9
341,334 - MPMX19_03075 0.33 -1.9
341,334 - MPMX19_03075 0.33 -1.1
341,334 - MPMX19_03075 0.33 +0.1
341,334 - MPMX19_03075 0.33 -0.2
341,388 + MPMX19_03075 0.37 +0.7
341,389 - MPMX19_03075 0.37 -0.9

Or see this region's nucleotide sequence