Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03045

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03044 and MPMX19_03045 are separated by 275 nucleotidesMPMX19_03045 and MPMX19_03046 are separated by 35 nucleotidesMPMX19_03046 and MPMX19_03047 are separated by 173 nucleotides MPMX19_03044: MPMX19_03044 - hypothetical protein, at 309,980 to 310,693 _03044 MPMX19_03045: MPMX19_03045 - hypothetical protein, at 310,969 to 311,631 _03045 MPMX19_03046: MPMX19_03046 - hypothetical protein, at 311,667 to 311,819 _03046 MPMX19_03047: MPMX19_03047 - hypothetical protein, at 311,993 to 312,133 _03047 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 310.065 kb on + strand, within MPMX19_03044at 310.190 kb on + strand, within MPMX19_03044at 310.190 kb on + strand, within MPMX19_03044at 310.190 kb on + strand, within MPMX19_03044at 310.191 kb on - strand, within MPMX19_03044at 310.191 kb on - strand, within MPMX19_03044at 310.191 kb on - strand, within MPMX19_03044at 310.191 kb on - strand, within MPMX19_03044at 310.191 kb on - strand, within MPMX19_03044at 310.482 kb on + strand, within MPMX19_03044at 310.482 kb on + strand, within MPMX19_03044at 310.485 kb on + strand, within MPMX19_03044at 310.485 kb on + strand, within MPMX19_03044at 310.485 kb on + strand, within MPMX19_03044at 310.485 kb on + strand, within MPMX19_03044at 310.733 kb on + strandat 310.736 kb on - strandat 310.760 kb on + strandat 310.760 kb on + strandat 310.761 kb on - strandat 310.761 kb on - strandat 310.761 kb on - strandat 310.761 kb on - strandat 310.856 kb on - strandat 310.897 kb on - strandat 311.000 kb on + strandat 311.000 kb on + strandat 311.001 kb on - strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.002 kb on + strandat 311.003 kb on - strandat 311.101 kb on + strand, within MPMX19_03045at 311.102 kb on - strand, within MPMX19_03045at 311.102 kb on - strand, within MPMX19_03045at 311.102 kb on - strand, within MPMX19_03045at 311.273 kb on + strand, within MPMX19_03045at 311.377 kb on - strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.401 kb on + strand, within MPMX19_03045at 311.402 kb on - strand, within MPMX19_03045at 311.402 kb on - strand, within MPMX19_03045at 311.402 kb on - strand, within MPMX19_03045at 311.402 kb on - strand, within MPMX19_03045at 311.542 kb on + strand, within MPMX19_03045at 311.542 kb on + strand, within MPMX19_03045at 311.542 kb on + strand, within MPMX19_03045at 311.542 kb on + strand, within MPMX19_03045at 311.542 kb on + strand, within MPMX19_03045at 311.543 kb on - strand, within MPMX19_03045at 311.543 kb on - strand, within MPMX19_03045at 311.543 kb on - strand, within MPMX19_03045at 311.543 kb on - strand, within MPMX19_03045at 311.543 kb on - strand, within MPMX19_03045at 311.593 kb on - strandat 311.594 kb on + strandat 311.594 kb on + strandat 311.594 kb on + strandat 311.594 kb on + strandat 311.594 kb on + strandat 311.594 kb on + strandat 311.594 kb on + strandat 311.595 kb on - strandat 311.629 kb on + strandat 311.630 kb on - strandat 311.630 kb on - strandat 311.994 kb on + strandat 311.994 kb on + strandat 311.995 kb on - strandat 311.995 kb on - strandat 312.129 kb on + strandat 312.129 kb on + strandat 312.129 kb on + strandat 312.130 kb on - strandat 312.151 kb on + strandat 312.152 kb on - strandat 312.292 kb on - strandat 312.301 kb on + strandat 312.301 kb on + strandat 312.301 kb on + strandat 312.302 kb on - strandat 312.331 kb on + strandat 312.331 kb on + strandat 312.331 kb on + strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.332 kb on - strandat 312.362 kb on - strandat 312.533 kb on + strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strandat 312.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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310,065 + MPMX19_03044 0.12 +0.1
310,190 + MPMX19_03044 0.29 -0.6
310,190 + MPMX19_03044 0.29 -0.9
310,190 + MPMX19_03044 0.29 -0.8
310,191 - MPMX19_03044 0.30 +0.7
310,191 - MPMX19_03044 0.30 -1.5
310,191 - MPMX19_03044 0.30 +0.1
310,191 - MPMX19_03044 0.30 +1.8
310,191 - MPMX19_03044 0.30 -0.5
310,482 + MPMX19_03044 0.70 +0.4
310,482 + MPMX19_03044 0.70 +0.4
310,485 + MPMX19_03044 0.71 -3.6
310,485 + MPMX19_03044 0.71 -0.2
310,485 + MPMX19_03044 0.71 +1.1
310,485 + MPMX19_03044 0.71 -2.1
310,733 + -0.2
310,736 - +0.0
310,760 + -1.1
310,760 + +0.5
310,761 - +0.8
310,761 - -1.3
310,761 - +0.9
310,761 - +0.1
310,856 - -0.5
310,897 - +0.2
311,000 + +0.4
311,000 + -2.9
311,001 - -0.5
311,002 + +0.1
311,002 + +0.9
311,002 + +0.1
311,002 + -0.3
311,002 + +0.1
311,002 + -0.8
311,002 + -0.4
311,002 + +0.6
311,002 + +0.9
311,002 + -0.8
311,003 - -0.8
311,101 + MPMX19_03045 0.20 +0.0
311,102 - MPMX19_03045 0.20 -0.3
311,102 - MPMX19_03045 0.20 +0.4
311,102 - MPMX19_03045 0.20 -1.5
311,273 + MPMX19_03045 0.46 -0.5
311,377 - MPMX19_03045 0.62 -0.6
311,401 + MPMX19_03045 0.65 -0.1
311,401 + MPMX19_03045 0.65 -1.2
311,401 + MPMX19_03045 0.65 -0.1
311,401 + MPMX19_03045 0.65 +0.4
311,401 + MPMX19_03045 0.65 -1.4
311,401 + MPMX19_03045 0.65 +0.1
311,401 + MPMX19_03045 0.65 -1.1
311,402 - MPMX19_03045 0.65 -0.4
311,402 - MPMX19_03045 0.65 -0.4
311,402 - MPMX19_03045 0.65 -1.8
311,402 - MPMX19_03045 0.65 +1.4
311,542 + MPMX19_03045 0.86 +0.5
311,542 + MPMX19_03045 0.86 +0.5
311,542 + MPMX19_03045 0.86 -0.8
311,542 + MPMX19_03045 0.86 -0.9
311,542 + MPMX19_03045 0.86 -0.4
311,543 - MPMX19_03045 0.87 -0.2
311,543 - MPMX19_03045 0.87 -1.6
311,543 - MPMX19_03045 0.87 -0.4
311,543 - MPMX19_03045 0.87 +0.5
311,543 - MPMX19_03045 0.87 +0.1
311,593 - -0.3
311,594 + -0.6
311,594 + +0.8
311,594 + +1.9
311,594 + +0.2
311,594 + -0.1
311,594 + -0.9
311,594 + -0.9
311,595 - -0.5
311,629 + -0.8
311,630 - -0.4
311,630 - -1.3
311,994 + +0.1
311,994 + -0.2
311,995 - +0.1
311,995 - -2.0
312,129 + -1.0
312,129 + -1.2
312,129 + -0.4
312,130 - +0.7
312,151 + -0.5
312,152 - +0.5
312,292 - +0.5
312,301 + -1.4
312,301 + +0.4
312,301 + -0.8
312,302 - +0.9
312,331 + -1.6
312,331 + +0.7
312,331 + -1.1
312,332 - -0.6
312,332 - -0.9
312,332 - +0.8
312,332 - -0.5
312,332 - +0.1
312,362 - -0.9
312,533 + +0.4
312,534 - -0.1
312,534 - +1.0
312,534 - -0.8
312,534 - +1.1
312,534 - -0.4

Or see this region's nucleotide sequence