Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02990

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02989 and MPMX19_02990 are separated by 112 nucleotidesMPMX19_02990 and MPMX19_02991 are separated by 64 nucleotidesMPMX19_02991 and MPMX19_02992 are separated by 89 nucleotides MPMX19_02989: MPMX19_02989 - Riboflavin transport system permease protein RibX, at 250,584 to 251,393 _02989 MPMX19_02990: MPMX19_02990 - hypothetical protein, at 251,506 to 252,522 _02990 MPMX19_02991: MPMX19_02991 - Taurine import ATP-binding protein TauB, at 252,587 to 253,411 _02991 MPMX19_02992: MPMX19_02992 - hypothetical protein, at 253,501 to 254,865 _02992 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.884 kb on + strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 250.885 kb on - strand, within MPMX19_02989at 251.341 kb on - strandat 251.412 kb on - strandat 251.599 kb on + strandat 251.599 kb on + strandat 251.599 kb on + strandat 251.599 kb on + strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.600 kb on - strandat 251.605 kb on + strandat 251.605 kb on + strandat 251.605 kb on + strandat 251.606 kb on - strandat 251.606 kb on - strandat 251.606 kb on - strandat 251.626 kb on + strand, within MPMX19_02990at 251.626 kb on + strand, within MPMX19_02990at 251.626 kb on + strand, within MPMX19_02990at 251.626 kb on + strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.627 kb on - strand, within MPMX19_02990at 251.629 kb on + strand, within MPMX19_02990at 251.650 kb on + strand, within MPMX19_02990at 251.650 kb on + strand, within MPMX19_02990at 251.651 kb on - strand, within MPMX19_02990at 251.743 kb on + strand, within MPMX19_02990at 251.743 kb on + strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 251.744 kb on - strand, within MPMX19_02990at 252.032 kb on + strand, within MPMX19_02990at 252.032 kb on + strand, within MPMX19_02990at 252.032 kb on + strand, within MPMX19_02990at 252.043 kb on + strand, within MPMX19_02990at 252.043 kb on + strand, within MPMX19_02990at 252.043 kb on + strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.044 kb on - strand, within MPMX19_02990at 252.116 kb on - strand, within MPMX19_02990at 252.331 kb on + strand, within MPMX19_02990at 252.331 kb on + strand, within MPMX19_02990at 252.332 kb on - strand, within MPMX19_02990at 252.460 kb on + strandat 252.460 kb on + strandat 252.460 kb on + strandat 252.461 kb on - strandat 252.461 kb on - strandat 252.461 kb on - strandat 252.520 kb on + strandat 252.521 kb on - strandat 252.521 kb on - strandat 252.521 kb on - strandat 252.521 kb on - strandat 252.681 kb on - strand, within MPMX19_02991at 252.681 kb on - strand, within MPMX19_02991at 252.681 kb on - strand, within MPMX19_02991at 252.974 kb on + strand, within MPMX19_02991at 253.034 kb on + strand, within MPMX19_02991at 253.034 kb on + strand, within MPMX19_02991at 253.034 kb on + strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.035 kb on - strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.298 kb on + strand, within MPMX19_02991at 253.299 kb on - strand, within MPMX19_02991at 253.299 kb on - strand, within MPMX19_02991at 253.299 kb on - strand, within MPMX19_02991at 253.299 kb on - strand, within MPMX19_02991at 253.409 kb on + strandat 253.409 kb on + strandat 253.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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250,713 + MPMX19_02989 0.16 -1.4
250,713 + MPMX19_02989 0.16 +1.3
250,713 + MPMX19_02989 0.16 +0.1
250,713 + MPMX19_02989 0.16 -0.6
250,713 + MPMX19_02989 0.16 -0.2
250,713 + MPMX19_02989 0.16 -2.4
250,714 - MPMX19_02989 0.16 +0.2
250,714 - MPMX19_02989 0.16 -0.6
250,884 + MPMX19_02989 0.37 -0.9
250,884 + MPMX19_02989 0.37 +0.8
250,884 + MPMX19_02989 0.37 -0.4
250,884 + MPMX19_02989 0.37 +0.9
250,884 + MPMX19_02989 0.37 -0.1
250,884 + MPMX19_02989 0.37 -0.4
250,884 + MPMX19_02989 0.37 -0.3
250,884 + MPMX19_02989 0.37 +0.2
250,884 + MPMX19_02989 0.37 -0.5
250,884 + MPMX19_02989 0.37 +1.3
250,884 + MPMX19_02989 0.37 -1.1
250,884 + MPMX19_02989 0.37 +0.1
250,884 + MPMX19_02989 0.37 -1.1
250,884 + MPMX19_02989 0.37 -2.7
250,884 + MPMX19_02989 0.37 +0.8
250,884 + MPMX19_02989 0.37 +0.1
250,885 - MPMX19_02989 0.37 +0.4
250,885 - MPMX19_02989 0.37 -0.4
250,885 - MPMX19_02989 0.37 -2.5
250,885 - MPMX19_02989 0.37 -0.2
250,885 - MPMX19_02989 0.37 -0.2
250,885 - MPMX19_02989 0.37 -1.8
250,885 - MPMX19_02989 0.37 -2.5
250,885 - MPMX19_02989 0.37 -0.4
250,885 - MPMX19_02989 0.37 -0.1
250,885 - MPMX19_02989 0.37 -0.2
250,885 - MPMX19_02989 0.37 -1.1
250,885 - MPMX19_02989 0.37 -1.4
250,885 - MPMX19_02989 0.37 -1.3
251,341 - +0.5
251,412 - -0.4
251,599 + -0.0
251,599 + -0.2
251,599 + +0.2
251,599 + -0.7
251,600 - -0.9
251,600 - -0.2
251,600 - -0.7
251,600 - +0.9
251,600 - -1.5
251,600 - -0.3
251,605 + -1.1
251,605 + -0.5
251,605 + -0.2
251,606 - -0.7
251,606 - -1.0
251,606 - -0.7
251,626 + MPMX19_02990 0.12 +0.6
251,626 + MPMX19_02990 0.12 +0.3
251,626 + MPMX19_02990 0.12 -0.4
251,626 + MPMX19_02990 0.12 +0.6
251,627 - MPMX19_02990 0.12 +0.4
251,627 - MPMX19_02990 0.12 -0.3
251,627 - MPMX19_02990 0.12 +0.2
251,627 - MPMX19_02990 0.12 -0.2
251,627 - MPMX19_02990 0.12 -0.6
251,627 - MPMX19_02990 0.12 -0.3
251,627 - MPMX19_02990 0.12 +0.0
251,627 - MPMX19_02990 0.12 -0.0
251,629 + MPMX19_02990 0.12 -0.4
251,650 + MPMX19_02990 0.14 +0.7
251,650 + MPMX19_02990 0.14 -1.8
251,651 - MPMX19_02990 0.14 -0.1
251,743 + MPMX19_02990 0.23 +1.1
251,743 + MPMX19_02990 0.23 +0.9
251,744 - MPMX19_02990 0.23 +0.9
251,744 - MPMX19_02990 0.23 -1.1
251,744 - MPMX19_02990 0.23 +0.9
251,744 - MPMX19_02990 0.23 +0.6
252,032 + MPMX19_02990 0.52 -0.1
252,032 + MPMX19_02990 0.52 +0.3
252,032 + MPMX19_02990 0.52 +0.6
252,043 + MPMX19_02990 0.53 +1.3
252,043 + MPMX19_02990 0.53 -0.7
252,043 + MPMX19_02990 0.53 -0.7
252,044 - MPMX19_02990 0.53 -0.9
252,044 - MPMX19_02990 0.53 +0.9
252,044 - MPMX19_02990 0.53 -1.5
252,044 - MPMX19_02990 0.53 +1.5
252,044 - MPMX19_02990 0.53 -0.7
252,044 - MPMX19_02990 0.53 -1.0
252,044 - MPMX19_02990 0.53 +0.1
252,116 - MPMX19_02990 0.60 +2.3
252,331 + MPMX19_02990 0.81 +0.9
252,331 + MPMX19_02990 0.81 +0.1
252,332 - MPMX19_02990 0.81 +0.1
252,460 + -0.8
252,460 + -0.7
252,460 + -1.9
252,461 - +1.9
252,461 - +0.1
252,461 - -0.8
252,520 + -0.5
252,521 - -0.3
252,521 - -0.9
252,521 - -0.8
252,521 - +0.3
252,681 - MPMX19_02991 0.11 +0.1
252,681 - MPMX19_02991 0.11 -0.1
252,681 - MPMX19_02991 0.11 -3.0
252,974 + MPMX19_02991 0.47 -0.1
253,034 + MPMX19_02991 0.54 -0.6
253,034 + MPMX19_02991 0.54 +0.0
253,034 + MPMX19_02991 0.54 -0.1
253,035 - MPMX19_02991 0.54 -1.3
253,035 - MPMX19_02991 0.54 +0.3
253,035 - MPMX19_02991 0.54 -0.5
253,035 - MPMX19_02991 0.54 +0.1
253,035 - MPMX19_02991 0.54 +0.1
253,035 - MPMX19_02991 0.54 -0.7
253,035 - MPMX19_02991 0.54 -0.9
253,035 - MPMX19_02991 0.54 -0.7
253,035 - MPMX19_02991 0.54 +0.0
253,035 - MPMX19_02991 0.54 -0.1
253,035 - MPMX19_02991 0.54 -1.7
253,298 + MPMX19_02991 0.86 -0.3
253,298 + MPMX19_02991 0.86 -0.7
253,298 + MPMX19_02991 0.86 -0.2
253,298 + MPMX19_02991 0.86 +0.3
253,298 + MPMX19_02991 0.86 -0.3
253,298 + MPMX19_02991 0.86 -0.1
253,298 + MPMX19_02991 0.86 -1.7
253,299 - MPMX19_02991 0.86 -0.6
253,299 - MPMX19_02991 0.86 +0.7
253,299 - MPMX19_02991 0.86 +1.3
253,299 - MPMX19_02991 0.86 -0.4
253,409 + -0.5
253,409 + +0.7
253,410 - +0.3

Or see this region's nucleotide sequence