Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02959 and MPMX19_02960 are separated by 156 nucleotides MPMX19_02960 and MPMX19_02961 are separated by 366 nucleotides
MPMX19_02959: MPMX19_02959 - HTH-type transcriptional regulator DmlR, at 218,701 to 219,687
_02959
MPMX19_02960: MPMX19_02960 - hypothetical protein, at 219,844 to 220,539
_02960
MPMX19_02961: MPMX19_02961 - Putative pyrimidine permease RutG, at 220,906 to 222,231
_02961
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 218.871 kb on - strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.005 kb on + strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.006 kb on - strand, within MPMX19_02959 at 219.113 kb on + strand, within MPMX19_02959 at 219.113 kb on + strand, within MPMX19_02959 at 219.114 kb on - strand, within MPMX19_02959 at 219.114 kb on - strand, within MPMX19_02959 at 219.176 kb on + strand, within MPMX19_02959 at 219.177 kb on - strand, within MPMX19_02959 at 219.177 kb on - strand, within MPMX19_02959 at 219.335 kb on + strand, within MPMX19_02959 at 219.335 kb on + strand, within MPMX19_02959 at 219.336 kb on - strand, within MPMX19_02959 at 219.336 kb on - strand, within MPMX19_02959 at 219.336 kb on - strand, within MPMX19_02959 at 219.336 kb on - strand, within MPMX19_02959 at 219.494 kb on + strand, within MPMX19_02959 at 219.494 kb on + strand, within MPMX19_02959 at 219.495 kb on - strand, within MPMX19_02959 at 219.495 kb on - strand, within MPMX19_02959 at 219.753 kb on + strand at 219.791 kb on + strand at 219.791 kb on + strand at 219.791 kb on + strand at 219.791 kb on + strand at 219.791 kb on + strand at 219.792 kb on - strand at 219.908 kb on + strand at 219.908 kb on + strand at 219.909 kb on - strand at 219.918 kb on - strand, within MPMX19_02960 at 219.918 kb on - strand, within MPMX19_02960 at 220.648 kb on + strand at 220.648 kb on + strand at 220.649 kb on - strand at 220.649 kb on - strand at 220.649 kb on - strand at 220.749 kb on + strand at 220.749 kb on + strand at 220.801 kb on - strand at 220.801 kb on - strand at 220.801 kb on - strand at 220.982 kb on + strand at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.327 kb on + strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961 at 221.328 kb on - strand, within MPMX19_02961
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 218,871 - MPMX19_02959 0.17 -1.0 219,005 + MPMX19_02959 0.31 -1.1 219,005 + MPMX19_02959 0.31 +1.3 219,005 + MPMX19_02959 0.31 +0.9 219,005 + MPMX19_02959 0.31 -0.5 219,005 + MPMX19_02959 0.31 -0.1 219,005 + MPMX19_02959 0.31 +0.9 219,005 + MPMX19_02959 0.31 +0.1 219,005 + MPMX19_02959 0.31 -1.1 219,006 - MPMX19_02959 0.31 -0.2 219,006 - MPMX19_02959 0.31 +0.9 219,006 - MPMX19_02959 0.31 -0.8 219,006 - MPMX19_02959 0.31 -0.2 219,006 - MPMX19_02959 0.31 -0.5 219,006 - MPMX19_02959 0.31 -0.7 219,006 - MPMX19_02959 0.31 +1.1 219,006 - MPMX19_02959 0.31 -0.6 219,006 - MPMX19_02959 0.31 -0.6 219,113 + MPMX19_02959 0.42 -0.8 219,113 + MPMX19_02959 0.42 -1.0 219,114 - MPMX19_02959 0.42 -0.2 219,114 - MPMX19_02959 0.42 -0.4 219,176 + MPMX19_02959 0.48 -0.6 219,177 - MPMX19_02959 0.48 -0.5 219,177 - MPMX19_02959 0.48 -2.0 219,335 + MPMX19_02959 0.64 +1.5 219,335 + MPMX19_02959 0.64 -0.9 219,336 - MPMX19_02959 0.64 -0.6 219,336 - MPMX19_02959 0.64 -0.1 219,336 - MPMX19_02959 0.64 -1.0 219,336 - MPMX19_02959 0.64 -1.4 219,494 + MPMX19_02959 0.80 +0.8 219,494 + MPMX19_02959 0.80 -2.9 219,495 - MPMX19_02959 0.80 -2.2 219,495 - MPMX19_02959 0.80 -1.1 219,753 + +1.4 219,791 + -2.5 219,791 + +0.9 219,791 + +0.6 219,791 + +0.2 219,791 + -2.5 219,792 - +0.6 219,908 + +0.2 219,908 + +0.2 219,909 - -1.6 219,918 - MPMX19_02960 0.11 -1.1 219,918 - MPMX19_02960 0.11 +1.1 220,648 + -1.2 220,648 + -1.6 220,649 - +0.4 220,649 - -2.3 220,649 - +1.1 220,749 + +0.4 220,749 + -0.3 220,801 - -0.1 220,801 - -0.8 220,801 - -1.2 220,982 + +0.4 221,327 + MPMX19_02961 0.32 -1.4 221,327 + MPMX19_02961 0.32 -1.2 221,327 + MPMX19_02961 0.32 -0.9 221,327 + MPMX19_02961 0.32 -0.4 221,327 + MPMX19_02961 0.32 +0.4 221,327 + MPMX19_02961 0.32 -1.2 221,327 + MPMX19_02961 0.32 -1.2 221,327 + MPMX19_02961 0.32 -0.1 221,327 + MPMX19_02961 0.32 +0.4 221,327 + MPMX19_02961 0.32 -0.9 221,327 + MPMX19_02961 0.32 +0.5 221,327 + MPMX19_02961 0.32 -0.1 221,327 + MPMX19_02961 0.32 -0.8 221,327 + MPMX19_02961 0.32 -1.9 221,327 + MPMX19_02961 0.32 +0.4 221,328 - MPMX19_02961 0.32 +0.1 221,328 - MPMX19_02961 0.32 -2.9 221,328 - MPMX19_02961 0.32 -0.6 221,328 - MPMX19_02961 0.32 -1.1 221,328 - MPMX19_02961 0.32 -0.2 221,328 - MPMX19_02961 0.32 +0.3 221,328 - MPMX19_02961 0.32 -0.9 221,328 - MPMX19_02961 0.32 -0.6 221,328 - MPMX19_02961 0.32 -1.5 221,328 - MPMX19_02961 0.32 -0.1
Or see this region's nucleotide sequence