Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02959

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02958 and MPMX19_02959 are separated by 3 nucleotidesMPMX19_02959 and MPMX19_02960 are separated by 156 nucleotides MPMX19_02958: MPMX19_02958 - Ribulokinase, at 217,057 to 218,697 _02958 MPMX19_02959: MPMX19_02959 - HTH-type transcriptional regulator DmlR, at 218,701 to 219,687 _02959 MPMX19_02960: MPMX19_02960 - hypothetical protein, at 219,844 to 220,539 _02960 Position (kb) 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.923 kb on + strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.924 kb on - strand, within MPMX19_02958at 217.975 kb on + strand, within MPMX19_02958at 217.975 kb on + strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 217.976 kb on - strand, within MPMX19_02958at 218.116 kb on + strand, within MPMX19_02958at 218.117 kb on - strand, within MPMX19_02958at 218.117 kb on - strand, within MPMX19_02958at 218.117 kb on - strand, within MPMX19_02958at 218.305 kb on + strand, within MPMX19_02958at 218.305 kb on + strand, within MPMX19_02958at 218.306 kb on - strand, within MPMX19_02958at 218.306 kb on - strand, within MPMX19_02958at 218.306 kb on - strand, within MPMX19_02958at 218.332 kb on + strand, within MPMX19_02958at 218.332 kb on + strand, within MPMX19_02958at 218.333 kb on - strand, within MPMX19_02958at 218.374 kb on + strand, within MPMX19_02958at 218.374 kb on + strand, within MPMX19_02958at 218.375 kb on - strand, within MPMX19_02958at 218.614 kb on + strandat 218.615 kb on - strandat 218.629 kb on + strandat 218.629 kb on + strandat 218.629 kb on + strandat 218.871 kb on - strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.113 kb on + strand, within MPMX19_02959at 219.113 kb on + strand, within MPMX19_02959at 219.114 kb on - strand, within MPMX19_02959at 219.114 kb on - strand, within MPMX19_02959at 219.176 kb on + strand, within MPMX19_02959at 219.177 kb on - strand, within MPMX19_02959at 219.177 kb on - strand, within MPMX19_02959at 219.335 kb on + strand, within MPMX19_02959at 219.335 kb on + strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.494 kb on + strand, within MPMX19_02959at 219.494 kb on + strand, within MPMX19_02959at 219.495 kb on - strand, within MPMX19_02959at 219.495 kb on - strand, within MPMX19_02959at 219.753 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.792 kb on - strandat 219.908 kb on + strandat 219.908 kb on + strandat 219.909 kb on - strandat 219.918 kb on - strand, within MPMX19_02960at 219.918 kb on - strand, within MPMX19_02960at 220.648 kb on + strandat 220.648 kb on + strandat 220.649 kb on - strandat 220.649 kb on - strandat 220.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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217,923 + MPMX19_02958 0.53 +0.0
217,923 + MPMX19_02958 0.53 +2.1
217,923 + MPMX19_02958 0.53 -0.5
217,923 + MPMX19_02958 0.53 -0.5
217,923 + MPMX19_02958 0.53 +1.5
217,923 + MPMX19_02958 0.53 -0.8
217,923 + MPMX19_02958 0.53 -0.4
217,924 - MPMX19_02958 0.53 -0.8
217,924 - MPMX19_02958 0.53 +0.9
217,924 - MPMX19_02958 0.53 +1.3
217,924 - MPMX19_02958 0.53 -0.1
217,924 - MPMX19_02958 0.53 +1.9
217,924 - MPMX19_02958 0.53 -0.2
217,975 + MPMX19_02958 0.56 +0.7
217,975 + MPMX19_02958 0.56 -0.1
217,976 - MPMX19_02958 0.56 -0.4
217,976 - MPMX19_02958 0.56 +1.7
217,976 - MPMX19_02958 0.56 -0.1
218,116 + MPMX19_02958 0.65 -0.3
218,117 - MPMX19_02958 0.65 +0.8
218,117 - MPMX19_02958 0.65 -0.2
218,117 - MPMX19_02958 0.65 -0.8
218,305 + MPMX19_02958 0.76 -0.6
218,305 + MPMX19_02958 0.76 -1.8
218,306 - MPMX19_02958 0.76 -0.1
218,306 - MPMX19_02958 0.76 +0.2
218,306 - MPMX19_02958 0.76 -1.6
218,332 + MPMX19_02958 0.78 -1.1
218,332 + MPMX19_02958 0.78 +0.3
218,333 - MPMX19_02958 0.78 +1.9
218,374 + MPMX19_02958 0.80 -1.1
218,374 + MPMX19_02958 0.80 +0.2
218,375 - MPMX19_02958 0.80 +0.7
218,614 + -1.5
218,615 - -0.8
218,629 + +0.4
218,629 + -0.4
218,629 + -0.3
218,871 - MPMX19_02959 0.17 -1.0
219,005 + MPMX19_02959 0.31 -1.1
219,005 + MPMX19_02959 0.31 +1.3
219,005 + MPMX19_02959 0.31 +0.9
219,005 + MPMX19_02959 0.31 -0.5
219,005 + MPMX19_02959 0.31 -0.1
219,005 + MPMX19_02959 0.31 +0.9
219,005 + MPMX19_02959 0.31 +0.1
219,005 + MPMX19_02959 0.31 -1.1
219,006 - MPMX19_02959 0.31 -0.2
219,006 - MPMX19_02959 0.31 +0.9
219,006 - MPMX19_02959 0.31 -0.8
219,006 - MPMX19_02959 0.31 -0.2
219,006 - MPMX19_02959 0.31 -0.5
219,006 - MPMX19_02959 0.31 -0.7
219,006 - MPMX19_02959 0.31 +1.1
219,006 - MPMX19_02959 0.31 -0.6
219,006 - MPMX19_02959 0.31 -0.6
219,113 + MPMX19_02959 0.42 -0.8
219,113 + MPMX19_02959 0.42 -1.0
219,114 - MPMX19_02959 0.42 -0.2
219,114 - MPMX19_02959 0.42 -0.4
219,176 + MPMX19_02959 0.48 -0.6
219,177 - MPMX19_02959 0.48 -0.5
219,177 - MPMX19_02959 0.48 -2.0
219,335 + MPMX19_02959 0.64 +1.5
219,335 + MPMX19_02959 0.64 -0.9
219,336 - MPMX19_02959 0.64 -0.6
219,336 - MPMX19_02959 0.64 -0.1
219,336 - MPMX19_02959 0.64 -1.0
219,336 - MPMX19_02959 0.64 -1.4
219,494 + MPMX19_02959 0.80 +0.8
219,494 + MPMX19_02959 0.80 -2.9
219,495 - MPMX19_02959 0.80 -2.2
219,495 - MPMX19_02959 0.80 -1.1
219,753 + +1.4
219,791 + -2.5
219,791 + +0.9
219,791 + +0.6
219,791 + +0.2
219,791 + -2.5
219,792 - +0.6
219,908 + +0.2
219,908 + +0.2
219,909 - -1.6
219,918 - MPMX19_02960 0.11 -1.1
219,918 - MPMX19_02960 0.11 +1.1
220,648 + -1.2
220,648 + -1.6
220,649 - +0.4
220,649 - -2.3
220,649 - +1.1

Or see this region's nucleotide sequence