Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02946

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02944 and MPMX19_02945 are separated by 46 nucleotidesMPMX19_02945 and MPMX19_02946 overlap by 4 nucleotidesMPMX19_02946 and MPMX19_02947 overlap by 11 nucleotidesMPMX19_02947 and MPMX19_02948 are separated by 13 nucleotides MPMX19_02944: MPMX19_02944 - Fructose-1,6-bisphosphatase class 1, at 202,596 to 203,708 _02944 MPMX19_02945: MPMX19_02945 - Protein CbbX, at 203,755 to 204,675 _02945 MPMX19_02946: MPMX19_02946 - Ribulose-phosphate 3-epimerase, at 204,672 to 205,394 _02946 MPMX19_02947: MPMX19_02947 - Ribulose bisphosphate carboxylase small chain, chromosomal, at 205,384 to 205,824 _02947 MPMX19_02948: MPMX19_02948 - Ribulose bisphosphate carboxylase large chain, at 205,838 to 207,334 _02948 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 203.730 kb on + strandat 203.730 kb on + strandat 203.730 kb on + strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.731 kb on - strandat 203.756 kb on + strandat 203.756 kb on + strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.757 kb on - strandat 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.939 kb on + strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 203.940 kb on - strand, within MPMX19_02945at 204.191 kb on + strand, within MPMX19_02945at 204.192 kb on - strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.221 kb on + strand, within MPMX19_02945at 204.222 kb on - strand, within MPMX19_02945at 204.222 kb on - strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.224 kb on + strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.225 kb on - strand, within MPMX19_02945at 204.300 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.302 kb on + strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.303 kb on - strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.356 kb on + strand, within MPMX19_02945at 204.357 kb on - strand, within MPMX19_02945at 204.593 kb on + strandat 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.255 kb on + strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.256 kb on - strand, within MPMX19_02946at 205.369 kb on + strandat 205.369 kb on + strandat 205.369 kb on + strandat 205.370 kb on - strandat 205.370 kb on - strandat 205.412 kb on + strandat 205.442 kb on + strand, within MPMX19_02947at 205.442 kb on + strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.443 kb on - strand, within MPMX19_02947at 205.457 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.589 kb on + strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.590 kb on - strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.685 kb on + strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.686 kb on - strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.751 kb on + strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.752 kb on - strand, within MPMX19_02947at 205.839 kb on + strandat 205.839 kb on + strandat 205.839 kb on + strandat 205.839 kb on + strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.840 kb on - strandat 205.866 kb on + strandat 205.866 kb on + strandat 205.866 kb on + strandat 205.866 kb on + strandat 205.867 kb on - strandat 205.867 kb on - strandat 205.867 kb on - strandat 205.891 kb on - strandat 205.891 kb on - strandat 206.118 kb on + strand, within MPMX19_02948at 206.118 kb on + strand, within MPMX19_02948at 206.118 kb on + strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.119 kb on - strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.259 kb on + strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.260 kb on - strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948at 206.394 kb on + strand, within MPMX19_02948

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
203,730 + +1.1
203,730 + -1.1
203,730 + +0.1
203,731 - +1.3
203,731 - +0.1
203,731 - -0.3
203,731 - +0.0
203,731 - -1.0
203,731 - -0.1
203,731 - -0.4
203,731 - -1.5
203,756 + -1.1
203,756 + +1.1
203,757 - -0.5
203,757 - -0.2
203,757 - +0.1
203,757 - -2.3
203,939 + MPMX19_02945 0.20 -0.1
203,939 + MPMX19_02945 0.20 +0.8
203,939 + MPMX19_02945 0.20 +1.2
203,939 + MPMX19_02945 0.20 -0.9
203,939 + MPMX19_02945 0.20 -0.1
203,939 + MPMX19_02945 0.20 -0.1
203,939 + MPMX19_02945 0.20 -1.5
203,939 + MPMX19_02945 0.20 -1.9
203,939 + MPMX19_02945 0.20 -1.6
203,939 + MPMX19_02945 0.20 +0.1
203,939 + MPMX19_02945 0.20 -0.9
203,940 - MPMX19_02945 0.20 +0.9
203,940 - MPMX19_02945 0.20 -0.1
203,940 - MPMX19_02945 0.20 -0.8
203,940 - MPMX19_02945 0.20 -0.2
203,940 - MPMX19_02945 0.20 -0.6
203,940 - MPMX19_02945 0.20 +0.9
203,940 - MPMX19_02945 0.20 -0.8
203,940 - MPMX19_02945 0.20 +0.4
203,940 - MPMX19_02945 0.20 -0.2
204,191 + MPMX19_02945 0.47 +0.3
204,192 - MPMX19_02945 0.47 -0.4
204,221 + MPMX19_02945 0.51 -0.1
204,221 + MPMX19_02945 0.51 -0.5
204,221 + MPMX19_02945 0.51 -0.9
204,221 + MPMX19_02945 0.51 +0.5
204,222 - MPMX19_02945 0.51 +0.7
204,222 - MPMX19_02945 0.51 -1.2
204,224 + MPMX19_02945 0.51 -0.9
204,224 + MPMX19_02945 0.51 -0.8
204,224 + MPMX19_02945 0.51 +0.9
204,224 + MPMX19_02945 0.51 -1.0
204,224 + MPMX19_02945 0.51 -0.3
204,224 + MPMX19_02945 0.51 -0.7
204,224 + MPMX19_02945 0.51 -2.1
204,225 - MPMX19_02945 0.51 -1.4
204,225 - MPMX19_02945 0.51 -1.4
204,225 - MPMX19_02945 0.51 +1.4
204,225 - MPMX19_02945 0.51 -0.7
204,225 - MPMX19_02945 0.51 -1.5
204,225 - MPMX19_02945 0.51 +0.1
204,225 - MPMX19_02945 0.51 -1.6
204,225 - MPMX19_02945 0.51 -1.1
204,225 - MPMX19_02945 0.51 -0.8
204,225 - MPMX19_02945 0.51 +1.1
204,225 - MPMX19_02945 0.51 +1.3
204,300 + MPMX19_02945 0.59 -1.5
204,302 + MPMX19_02945 0.59 -0.9
204,302 + MPMX19_02945 0.59 +1.0
204,302 + MPMX19_02945 0.59 -0.5
204,302 + MPMX19_02945 0.59 -1.1
204,302 + MPMX19_02945 0.59 -0.1
204,303 - MPMX19_02945 0.60 -0.8
204,303 - MPMX19_02945 0.60 +0.4
204,303 - MPMX19_02945 0.60 -1.2
204,303 - MPMX19_02945 0.60 -1.0
204,303 - MPMX19_02945 0.60 -0.6
204,303 - MPMX19_02945 0.60 +0.3
204,303 - MPMX19_02945 0.60 +0.6
204,303 - MPMX19_02945 0.60 -0.4
204,303 - MPMX19_02945 0.60 +0.3
204,356 + MPMX19_02945 0.65 -0.6
204,356 + MPMX19_02945 0.65 +0.5
204,356 + MPMX19_02945 0.65 -2.3
204,356 + MPMX19_02945 0.65 -0.4
204,357 - MPMX19_02945 0.65 -0.4
204,593 + +0.4
205,255 + MPMX19_02946 0.81 +0.5
205,255 + MPMX19_02946 0.81 -3.1
205,255 + MPMX19_02946 0.81 +0.1
205,255 + MPMX19_02946 0.81 +1.7
205,255 + MPMX19_02946 0.81 -0.1
205,255 + MPMX19_02946 0.81 -0.4
205,255 + MPMX19_02946 0.81 -0.2
205,255 + MPMX19_02946 0.81 -0.6
205,255 + MPMX19_02946 0.81 +0.4
205,255 + MPMX19_02946 0.81 -0.1
205,255 + MPMX19_02946 0.81 -0.8
205,256 - MPMX19_02946 0.81 -1.6
205,256 - MPMX19_02946 0.81 +0.5
205,256 - MPMX19_02946 0.81 -2.4
205,256 - MPMX19_02946 0.81 -2.1
205,256 - MPMX19_02946 0.81 -1.4
205,256 - MPMX19_02946 0.81 -0.2
205,256 - MPMX19_02946 0.81 -0.4
205,256 - MPMX19_02946 0.81 -0.1
205,256 - MPMX19_02946 0.81 -1.2
205,256 - MPMX19_02946 0.81 -0.1
205,256 - MPMX19_02946 0.81 -0.9
205,256 - MPMX19_02946 0.81 -2.0
205,256 - MPMX19_02946 0.81 +1.1
205,256 - MPMX19_02946 0.81 -0.6
205,256 - MPMX19_02946 0.81 +0.4
205,256 - MPMX19_02946 0.81 -1.1
205,256 - MPMX19_02946 0.81 +1.2
205,256 - MPMX19_02946 0.81 -0.4
205,256 - MPMX19_02946 0.81 -0.6
205,369 + -0.9
205,369 + -0.2
205,369 + -0.5
205,370 - -0.6
205,370 - -0.4
205,412 + -0.6
205,442 + MPMX19_02947 0.13 -0.2
205,442 + MPMX19_02947 0.13 -0.5
205,443 - MPMX19_02947 0.13 -0.1
205,443 - MPMX19_02947 0.13 -0.4
205,443 - MPMX19_02947 0.13 +0.0
205,443 - MPMX19_02947 0.13 -0.2
205,443 - MPMX19_02947 0.13 -0.1
205,457 + MPMX19_02947 0.17 +0.4
205,589 + MPMX19_02947 0.46 -0.1
205,589 + MPMX19_02947 0.46 -0.1
205,589 + MPMX19_02947 0.46 +0.3
205,589 + MPMX19_02947 0.46 -1.3
205,589 + MPMX19_02947 0.46 -0.6
205,589 + MPMX19_02947 0.46 +0.2
205,589 + MPMX19_02947 0.46 -0.6
205,589 + MPMX19_02947 0.46 -0.4
205,590 - MPMX19_02947 0.47 -0.1
205,590 - MPMX19_02947 0.47 +0.7
205,590 - MPMX19_02947 0.47 -0.1
205,590 - MPMX19_02947 0.47 +0.3
205,685 + MPMX19_02947 0.68 +0.2
205,685 + MPMX19_02947 0.68 +0.9
205,685 + MPMX19_02947 0.68 +0.0
205,685 + MPMX19_02947 0.68 -1.1
205,685 + MPMX19_02947 0.68 -0.3
205,685 + MPMX19_02947 0.68 -0.2
205,685 + MPMX19_02947 0.68 +0.9
205,685 + MPMX19_02947 0.68 -0.6
205,685 + MPMX19_02947 0.68 +0.7
205,686 - MPMX19_02947 0.68 -0.7
205,686 - MPMX19_02947 0.68 -1.0
205,686 - MPMX19_02947 0.68 +0.4
205,686 - MPMX19_02947 0.68 -2.9
205,686 - MPMX19_02947 0.68 +0.4
205,686 - MPMX19_02947 0.68 -0.8
205,751 + MPMX19_02947 0.83 +1.9
205,751 + MPMX19_02947 0.83 -1.5
205,751 + MPMX19_02947 0.83 +0.2
205,751 + MPMX19_02947 0.83 -1.2
205,751 + MPMX19_02947 0.83 -0.2
205,752 - MPMX19_02947 0.83 -0.5
205,752 - MPMX19_02947 0.83 -0.8
205,752 - MPMX19_02947 0.83 -0.5
205,752 - MPMX19_02947 0.83 -1.4
205,839 + -0.9
205,839 + +0.4
205,839 + +0.7
205,839 + +0.6
205,840 - -0.2
205,840 - +0.4
205,840 - -0.7
205,840 - -0.6
205,840 - -0.0
205,840 - +0.7
205,840 - -1.1
205,840 - -1.1
205,866 + -0.3
205,866 + -1.2
205,866 + -1.0
205,866 + -0.2
205,867 - +0.9
205,867 - -0.4
205,867 - -0.4
205,891 - -0.1
205,891 - +0.7
206,118 + MPMX19_02948 0.19 -0.9
206,118 + MPMX19_02948 0.19 -1.3
206,118 + MPMX19_02948 0.19 -0.6
206,119 - MPMX19_02948 0.19 -2.2
206,119 - MPMX19_02948 0.19 -0.9
206,119 - MPMX19_02948 0.19 +0.3
206,119 - MPMX19_02948 0.19 -0.2
206,259 + MPMX19_02948 0.28 -0.3
206,259 + MPMX19_02948 0.28 -0.5
206,259 + MPMX19_02948 0.28 -1.5
206,259 + MPMX19_02948 0.28 +0.6
206,259 + MPMX19_02948 0.28 +0.9
206,259 + MPMX19_02948 0.28 +1.9
206,259 + MPMX19_02948 0.28 +0.2
206,259 + MPMX19_02948 0.28 -0.3
206,259 + MPMX19_02948 0.28 -0.8
206,260 - MPMX19_02948 0.28 -1.5
206,260 - MPMX19_02948 0.28 +0.4
206,260 - MPMX19_02948 0.28 -0.4
206,260 - MPMX19_02948 0.28 -0.1
206,260 - MPMX19_02948 0.28 -0.1
206,260 - MPMX19_02948 0.28 -0.8
206,260 - MPMX19_02948 0.28 -0.3
206,260 - MPMX19_02948 0.28 -1.5
206,394 + MPMX19_02948 0.37 -0.6
206,394 + MPMX19_02948 0.37 -0.2
206,394 + MPMX19_02948 0.37 -0.5
206,394 + MPMX19_02948 0.37 -1.1
206,394 + MPMX19_02948 0.37 -0.9
206,394 + MPMX19_02948 0.37 -1.3
206,394 + MPMX19_02948 0.37 -1.9
206,394 + MPMX19_02948 0.37 -0.1
206,394 + MPMX19_02948 0.37 -0.5

Or see this region's nucleotide sequence