Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02925

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02924 and MPMX19_02925 are separated by 27 nucleotidesMPMX19_02925 and MPMX19_02926 are separated by 147 nucleotidesMPMX19_02926 and MPMX19_02927 are separated by 315 nucleotides MPMX19_02924: MPMX19_02924 - hypothetical protein, at 178,716 to 179,981 _02924 MPMX19_02925: MPMX19_02925 - Hydrazine synthase subunit beta, at 180,009 to 180,983 _02925 MPMX19_02926: MPMX19_02926 - hypothetical protein, at 181,131 to 181,514 _02926 MPMX19_02927: MPMX19_02927 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 181,830 to 182,357 _02927 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 179.014 kb on - strand, within MPMX19_02924at 179.192 kb on + strand, within MPMX19_02924at 179.192 kb on + strand, within MPMX19_02924at 179.193 kb on - strand, within MPMX19_02924at 179.193 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.340 kb on + strand, within MPMX19_02924at 179.340 kb on + strand, within MPMX19_02924at 179.340 kb on + strand, within MPMX19_02924at 179.341 kb on - strand, within MPMX19_02924at 179.341 kb on - strand, within MPMX19_02924at 179.490 kb on + strand, within MPMX19_02924at 179.535 kb on + strand, within MPMX19_02924at 179.535 kb on + strand, within MPMX19_02924at 179.535 kb on + strand, within MPMX19_02924at 179.688 kb on + strand, within MPMX19_02924at 179.688 kb on + strand, within MPMX19_02924at 179.689 kb on - strand, within MPMX19_02924at 179.689 kb on - strand, within MPMX19_02924at 179.689 kb on - strand, within MPMX19_02924at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.343 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 181.151 kb on - strandat 181.512 kb on + strandat 181.573 kb on + strandat 181.573 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.610 kb on + strandat 181.610 kb on + strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.648 kb on - strandat 181.648 kb on - strandat 181.696 kb on + strandat 181.697 kb on - strandat 181.697 kb on - strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.731 kb on - strandat 181.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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179,014 - MPMX19_02924 0.24 +0.1
179,192 + MPMX19_02924 0.38 +0.4
179,192 + MPMX19_02924 0.38 +0.2
179,193 - MPMX19_02924 0.38 -1.8
179,193 - MPMX19_02924 0.38 -1.1
179,275 - MPMX19_02924 0.44 -0.4
179,275 - MPMX19_02924 0.44 +0.3
179,275 - MPMX19_02924 0.44 -0.9
179,275 - MPMX19_02924 0.44 +0.4
179,275 - MPMX19_02924 0.44 -0.8
179,340 + MPMX19_02924 0.49 +0.4
179,340 + MPMX19_02924 0.49 -1.7
179,340 + MPMX19_02924 0.49 -0.2
179,341 - MPMX19_02924 0.49 +1.9
179,341 - MPMX19_02924 0.49 -1.0
179,490 + MPMX19_02924 0.61 -1.5
179,535 + MPMX19_02924 0.65 +0.2
179,535 + MPMX19_02924 0.65 +0.1
179,535 + MPMX19_02924 0.65 -0.7
179,688 + MPMX19_02924 0.77 +1.6
179,688 + MPMX19_02924 0.77 -0.4
179,689 - MPMX19_02924 0.77 +0.6
179,689 - MPMX19_02924 0.77 -0.2
179,689 - MPMX19_02924 0.77 +0.5
180,216 + MPMX19_02925 0.21 -1.6
180,216 + MPMX19_02925 0.21 -1.1
180,216 + MPMX19_02925 0.21 +1.9
180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 -1.6
180,216 + MPMX19_02925 0.21 -0.6
180,216 + MPMX19_02925 0.21 -1.2
180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 +0.6
180,216 + MPMX19_02925 0.21 -0.4
180,216 + MPMX19_02925 0.21 -1.9
180,217 - MPMX19_02925 0.21 -0.9
180,217 - MPMX19_02925 0.21 +0.5
180,217 - MPMX19_02925 0.21 -0.8
180,217 - MPMX19_02925 0.21 -1.5
180,217 - MPMX19_02925 0.21 -0.9
180,217 - MPMX19_02925 0.21 -0.1
180,217 - MPMX19_02925 0.21 -1.5
180,217 - MPMX19_02925 0.21 -0.9
180,217 - MPMX19_02925 0.21 +1.7
180,217 - MPMX19_02925 0.21 -0.8
180,217 - MPMX19_02925 0.21 -0.1
180,217 - MPMX19_02925 0.21 -0.4
180,342 + MPMX19_02925 0.34 +0.7
180,342 + MPMX19_02925 0.34 -0.9
180,342 + MPMX19_02925 0.34 +0.9
180,343 - MPMX19_02925 0.34 +0.9
180,411 - MPMX19_02925 0.41 -0.4
180,411 - MPMX19_02925 0.41 -0.1
180,811 - MPMX19_02925 0.82 -1.6
180,811 - MPMX19_02925 0.82 -0.6
180,870 + MPMX19_02925 0.88 -0.1
180,870 + MPMX19_02925 0.88 +0.9
180,870 + MPMX19_02925 0.88 -1.1
180,870 + MPMX19_02925 0.88 -1.2
180,870 + MPMX19_02925 0.88 -0.9
180,871 - MPMX19_02925 0.88 -2.0
180,871 - MPMX19_02925 0.88 +1.2
180,871 - MPMX19_02925 0.88 +0.9
181,151 - -2.0
181,512 + -1.1
181,573 + -0.3
181,573 + -0.1
181,608 + -0.3
181,608 + -0.9
181,608 + +0.2
181,608 + +0.6
181,608 + -0.1
181,608 + +0.2
181,608 + -0.4
181,609 - +0.6
181,609 - +0.4
181,609 - +0.2
181,609 - -0.9
181,609 - +0.1
181,610 + -0.4
181,610 + -1.1
181,611 - -0.2
181,611 - -1.9
181,611 - -0.1
181,648 - +0.7
181,648 - +0.5
181,696 + -0.6
181,697 - +0.5
181,697 - -0.1
181,730 + -0.7
181,730 + -0.5
181,730 + +0.4
181,731 - -1.3
181,731 - -1.6

Or see this region's nucleotide sequence