Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02906

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02904 and MPMX19_02905 overlap by 8 nucleotidesMPMX19_02905 and MPMX19_02906 overlap by 4 nucleotidesMPMX19_02906 and MPMX19_02907 are separated by 8 nucleotidesMPMX19_02907 and MPMX19_02908 overlap by 4 nucleotides MPMX19_02904: MPMX19_02904 - hypothetical protein, at 160,910 to 161,977 _02904 MPMX19_02905: MPMX19_02905 - hypothetical protein, at 161,970 to 162,452 _02905 MPMX19_02906: MPMX19_02906 - hypothetical protein, at 162,449 to 163,258 _02906 MPMX19_02907: MPMX19_02907 - Cytochrome c oxidase subunit 2, at 163,267 to 164,226 _02907 MPMX19_02908: MPMX19_02908 - Cytochrome c oxidase subunit 1-beta, at 164,223 to 165,866 _02908 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.585 kb on + strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.586 kb on - strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.648 kb on + strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.649 kb on - strand, within MPMX19_02904at 161.855 kb on + strand, within MPMX19_02904at 161.855 kb on + strand, within MPMX19_02904at 161.856 kb on - strand, within MPMX19_02904at 161.856 kb on - strand, within MPMX19_02904at 161.975 kb on + strandat 161.975 kb on + strandat 161.975 kb on + strandat 161.976 kb on - strandat 162.297 kb on + strand, within MPMX19_02905at 162.297 kb on + strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.298 kb on - strand, within MPMX19_02905at 162.483 kb on + strandat 162.483 kb on + strandat 162.483 kb on + strandat 162.483 kb on + strandat 162.484 kb on - strandat 162.484 kb on - strandat 162.484 kb on - strandat 162.677 kb on + strand, within MPMX19_02906at 162.677 kb on + strand, within MPMX19_02906at 162.677 kb on + strand, within MPMX19_02906at 162.678 kb on - strand, within MPMX19_02906at 162.678 kb on - strand, within MPMX19_02906at 162.764 kb on + strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.765 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 162.969 kb on - strand, within MPMX19_02906at 163.022 kb on + strand, within MPMX19_02906at 163.022 kb on + strand, within MPMX19_02906at 163.022 kb on + strand, within MPMX19_02906at 163.023 kb on - strand, within MPMX19_02906at 163.023 kb on - strand, within MPMX19_02906at 163.023 kb on - strand, within MPMX19_02906at 163.128 kb on - strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.154 kb on + strand, within MPMX19_02906at 163.155 kb on - strand, within MPMX19_02906at 163.155 kb on - strand, within MPMX19_02906at 163.206 kb on + strandat 163.206 kb on + strandat 163.207 kb on - strandat 163.507 kb on + strand, within MPMX19_02907at 163.507 kb on + strand, within MPMX19_02907at 163.508 kb on - strand, within MPMX19_02907at 163.508 kb on - strand, within MPMX19_02907at 163.508 kb on - strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.528 kb on + strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.529 kb on - strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.570 kb on + strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.571 kb on - strand, within MPMX19_02907at 163.786 kb on + strand, within MPMX19_02907at 163.850 kb on + strand, within MPMX19_02907at 163.850 kb on + strand, within MPMX19_02907at 163.851 kb on - strand, within MPMX19_02907at 163.851 kb on - strand, within MPMX19_02907at 163.939 kb on + strand, within MPMX19_02907at 163.939 kb on + strand, within MPMX19_02907at 163.939 kb on + strand, within MPMX19_02907at 163.939 kb on + strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 163.940 kb on - strand, within MPMX19_02907at 164.056 kb on + strand, within MPMX19_02907at 164.057 kb on - strand, within MPMX19_02907at 164.170 kb on + strandat 164.170 kb on + strandat 164.170 kb on + strandat 164.170 kb on + strandat 164.170 kb on + strandat 164.171 kb on - strandat 164.171 kb on - strandat 164.171 kb on - strandat 164.171 kb on - strandat 164.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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161,585 + MPMX19_02904 0.63 -0.1
161,585 + MPMX19_02904 0.63 -2.5
161,585 + MPMX19_02904 0.63 +1.7
161,585 + MPMX19_02904 0.63 -0.1
161,585 + MPMX19_02904 0.63 +0.2
161,585 + MPMX19_02904 0.63 +1.1
161,585 + MPMX19_02904 0.63 -1.6
161,585 + MPMX19_02904 0.63 -0.5
161,586 - MPMX19_02904 0.63 -1.5
161,586 - MPMX19_02904 0.63 -0.1
161,586 - MPMX19_02904 0.63 +0.1
161,586 - MPMX19_02904 0.63 +0.9
161,586 - MPMX19_02904 0.63 +0.1
161,648 + MPMX19_02904 0.69 -0.4
161,648 + MPMX19_02904 0.69 -1.3
161,648 + MPMX19_02904 0.69 -0.4
161,648 + MPMX19_02904 0.69 +0.9
161,648 + MPMX19_02904 0.69 -1.6
161,648 + MPMX19_02904 0.69 -1.1
161,648 + MPMX19_02904 0.69 -1.4
161,648 + MPMX19_02904 0.69 +0.2
161,648 + MPMX19_02904 0.69 +1.1
161,648 + MPMX19_02904 0.69 -0.4
161,648 + MPMX19_02904 0.69 -0.9
161,648 + MPMX19_02904 0.69 +0.1
161,648 + MPMX19_02904 0.69 -0.5
161,648 + MPMX19_02904 0.69 +0.1
161,649 - MPMX19_02904 0.69 -0.4
161,649 - MPMX19_02904 0.69 -0.5
161,649 - MPMX19_02904 0.69 +1.5
161,649 - MPMX19_02904 0.69 -1.6
161,649 - MPMX19_02904 0.69 -0.5
161,649 - MPMX19_02904 0.69 -0.1
161,649 - MPMX19_02904 0.69 -0.9
161,855 + MPMX19_02904 0.88 -1.0
161,855 + MPMX19_02904 0.88 -0.7
161,856 - MPMX19_02904 0.89 -1.1
161,856 - MPMX19_02904 0.89 -0.3
161,975 + -2.4
161,975 + +0.9
161,975 + -1.6
161,976 - -0.4
162,297 + MPMX19_02905 0.68 -1.1
162,297 + MPMX19_02905 0.68 -0.4
162,298 - MPMX19_02905 0.68 -0.4
162,298 - MPMX19_02905 0.68 -0.2
162,298 - MPMX19_02905 0.68 -2.6
162,483 + -2.1
162,483 + -0.7
162,483 + -0.1
162,483 + +0.4
162,484 - -1.4
162,484 - -0.1
162,484 - +0.9
162,677 + MPMX19_02906 0.28 -0.2
162,677 + MPMX19_02906 0.28 -0.6
162,677 + MPMX19_02906 0.28 -1.5
162,678 - MPMX19_02906 0.28 +1.1
162,678 - MPMX19_02906 0.28 -0.6
162,764 + MPMX19_02906 0.39 +0.7
162,765 - MPMX19_02906 0.39 -1.0
162,765 - MPMX19_02906 0.39 -1.0
162,765 - MPMX19_02906 0.39 -0.2
162,765 - MPMX19_02906 0.39 -0.9
162,969 - MPMX19_02906 0.64 -0.4
162,969 - MPMX19_02906 0.64 -2.2
162,969 - MPMX19_02906 0.64 -0.5
163,022 + MPMX19_02906 0.71 -0.2
163,022 + MPMX19_02906 0.71 -0.6
163,022 + MPMX19_02906 0.71 +0.2
163,023 - MPMX19_02906 0.71 +1.1
163,023 - MPMX19_02906 0.71 -2.1
163,023 - MPMX19_02906 0.71 -0.9
163,128 - MPMX19_02906 0.84 -1.2
163,154 + MPMX19_02906 0.87 -2.0
163,154 + MPMX19_02906 0.87 -0.6
163,154 + MPMX19_02906 0.87 -0.5
163,154 + MPMX19_02906 0.87 -0.3
163,154 + MPMX19_02906 0.87 +0.9
163,155 - MPMX19_02906 0.87 +0.1
163,155 - MPMX19_02906 0.87 +1.4
163,206 + +0.8
163,206 + +1.1
163,207 - +1.3
163,507 + MPMX19_02907 0.25 +1.0
163,507 + MPMX19_02907 0.25 +0.1
163,508 - MPMX19_02907 0.25 -1.1
163,508 - MPMX19_02907 0.25 -0.1
163,508 - MPMX19_02907 0.25 -1.7
163,528 + MPMX19_02907 0.27 -0.4
163,528 + MPMX19_02907 0.27 +1.9
163,528 + MPMX19_02907 0.27 +0.6
163,528 + MPMX19_02907 0.27 +0.1
163,528 + MPMX19_02907 0.27 -0.9
163,528 + MPMX19_02907 0.27 -0.6
163,528 + MPMX19_02907 0.27 -0.1
163,528 + MPMX19_02907 0.27 -0.6
163,528 + MPMX19_02907 0.27 +1.4
163,528 + MPMX19_02907 0.27 +0.6
163,529 - MPMX19_02907 0.27 +0.2
163,529 - MPMX19_02907 0.27 +0.1
163,529 - MPMX19_02907 0.27 -1.0
163,529 - MPMX19_02907 0.27 -0.1
163,529 - MPMX19_02907 0.27 -1.0
163,529 - MPMX19_02907 0.27 -0.2
163,529 - MPMX19_02907 0.27 +0.1
163,529 - MPMX19_02907 0.27 +0.1
163,529 - MPMX19_02907 0.27 +1.1
163,529 - MPMX19_02907 0.27 -1.6
163,570 + MPMX19_02907 0.32 -0.4
163,570 + MPMX19_02907 0.32 -1.0
163,570 + MPMX19_02907 0.32 -0.2
163,570 + MPMX19_02907 0.32 -0.0
163,570 + MPMX19_02907 0.32 +0.5
163,570 + MPMX19_02907 0.32 -0.8
163,570 + MPMX19_02907 0.32 -0.2
163,570 + MPMX19_02907 0.32 -1.2
163,570 + MPMX19_02907 0.32 -0.2
163,570 + MPMX19_02907 0.32 -0.0
163,570 + MPMX19_02907 0.32 -1.4
163,570 + MPMX19_02907 0.32 -1.5
163,570 + MPMX19_02907 0.32 -1.1
163,570 + MPMX19_02907 0.32 -0.5
163,570 + MPMX19_02907 0.32 -1.9
163,570 + MPMX19_02907 0.32 -0.3
163,570 + MPMX19_02907 0.32 +1.4
163,570 + MPMX19_02907 0.32 +1.6
163,570 + MPMX19_02907 0.32 -1.6
163,570 + MPMX19_02907 0.32 -0.6
163,570 + MPMX19_02907 0.32 -1.4
163,570 + MPMX19_02907 0.32 +0.4
163,570 + MPMX19_02907 0.32 -0.2
163,570 + MPMX19_02907 0.32 -2.5
163,571 - MPMX19_02907 0.32 +0.9
163,571 - MPMX19_02907 0.32 -0.7
163,571 - MPMX19_02907 0.32 +0.5
163,571 - MPMX19_02907 0.32 +1.1
163,571 - MPMX19_02907 0.32 +0.1
163,571 - MPMX19_02907 0.32 -1.1
163,571 - MPMX19_02907 0.32 +0.0
163,571 - MPMX19_02907 0.32 +1.1
163,571 - MPMX19_02907 0.32 +0.5
163,571 - MPMX19_02907 0.32 -1.4
163,571 - MPMX19_02907 0.32 -2.2
163,571 - MPMX19_02907 0.32 +0.5
163,571 - MPMX19_02907 0.32 -1.2
163,571 - MPMX19_02907 0.32 -1.4
163,571 - MPMX19_02907 0.32 -1.4
163,571 - MPMX19_02907 0.32 -0.3
163,571 - MPMX19_02907 0.32 -0.4
163,571 - MPMX19_02907 0.32 -1.5
163,571 - MPMX19_02907 0.32 -1.0
163,571 - MPMX19_02907 0.32 +0.2
163,571 - MPMX19_02907 0.32 -0.7
163,571 - MPMX19_02907 0.32 +0.5
163,571 - MPMX19_02907 0.32 -1.2
163,786 + MPMX19_02907 0.54 +0.0
163,850 + MPMX19_02907 0.61 -0.8
163,850 + MPMX19_02907 0.61 -0.1
163,851 - MPMX19_02907 0.61 +1.1
163,851 - MPMX19_02907 0.61 +0.6
163,939 + MPMX19_02907 0.70 +0.7
163,939 + MPMX19_02907 0.70 -1.1
163,939 + MPMX19_02907 0.70 -1.9
163,939 + MPMX19_02907 0.70 -1.3
163,940 - MPMX19_02907 0.70 -1.7
163,940 - MPMX19_02907 0.70 -0.2
163,940 - MPMX19_02907 0.70 -0.4
163,940 - MPMX19_02907 0.70 -1.1
163,940 - MPMX19_02907 0.70 -1.4
163,940 - MPMX19_02907 0.70 -1.1
163,940 - MPMX19_02907 0.70 +1.4
164,056 + MPMX19_02907 0.82 +0.1
164,057 - MPMX19_02907 0.82 -0.3
164,170 + -1.1
164,170 + -0.6
164,170 + -1.6
164,170 + +1.5
164,170 + -0.8
164,171 - -0.3
164,171 - -0.4
164,171 - +0.8
164,171 - -0.5
164,171 - +0.8

Or see this region's nucleotide sequence