Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02879 and MPMX19_02880 are separated by 167 nucleotides MPMX19_02880 and MPMX19_02881 are separated by 13 nucleotides MPMX19_02881 and MPMX19_02882 are separated by 109 nucleotides
MPMX19_02879: MPMX19_02879 - Pyridoxal 4-dehydrogenase, at 129,398 to 130,384
_02879
MPMX19_02880: MPMX19_02880 - hypothetical protein, at 130,552 to 131,658
_02880
MPMX19_02881: MPMX19_02881 - hypothetical protein, at 131,672 to 132,157
_02881
MPMX19_02882: MPMX19_02882 - Threonine/homoserine exporter RhtA, at 132,267 to 133,157
_02882
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.696 kb on + strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.697 kb on - strand, within MPMX19_02879 at 129.780 kb on + strand, within MPMX19_02879 at 129.781 kb on - strand, within MPMX19_02879 at 129.781 kb on - strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.800 kb on + strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.801 kb on - strand, within MPMX19_02879 at 129.983 kb on - strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.984 kb on + strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 129.985 kb on - strand, within MPMX19_02879 at 130.059 kb on + strand, within MPMX19_02879 at 130.059 kb on + strand, within MPMX19_02879 at 130.060 kb on - strand, within MPMX19_02879 at 130.066 kb on - strand, within MPMX19_02879 at 130.227 kb on + strand, within MPMX19_02879 at 130.228 kb on - strand, within MPMX19_02879 at 130.503 kb on + strand at 130.503 kb on + strand at 130.503 kb on + strand at 130.503 kb on + strand at 130.503 kb on + strand at 130.504 kb on - strand at 130.504 kb on - strand at 130.504 kb on - strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.549 kb on + strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.550 kb on - strand at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.693 kb on + strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 130.694 kb on - strand, within MPMX19_02880 at 131.638 kb on + strand at 131.673 kb on + strand at 131.778 kb on + strand, within MPMX19_02881 at 131.778 kb on + strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.779 kb on - strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.838 kb on + strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 131.839 kb on - strand, within MPMX19_02881 at 132.200 kb on + strand at 132.227 kb on + strand at 132.227 kb on + strand at 132.228 kb on - strand at 132.228 kb on - strand at 132.250 kb on + strand at 132.250 kb on + strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.251 kb on - strand at 132.266 kb on + strand at 132.266 kb on + strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.267 kb on - strand at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.360 kb on + strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.361 kb on - strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.516 kb on + strand, within MPMX19_02882 at 132.517 kb on - strand, within MPMX19_02882 at 132.553 kb on - strand, within MPMX19_02882
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 129,696 + MPMX19_02879 0.30 -0.2 129,696 + MPMX19_02879 0.30 +0.9 129,696 + MPMX19_02879 0.30 -0.6 129,696 + MPMX19_02879 0.30 -1.6 129,696 + MPMX19_02879 0.30 -0.9 129,696 + MPMX19_02879 0.30 -0.1 129,696 + MPMX19_02879 0.30 +0.0 129,697 - MPMX19_02879 0.30 -0.5 129,697 - MPMX19_02879 0.30 +0.1 129,697 - MPMX19_02879 0.30 -0.6 129,697 - MPMX19_02879 0.30 -1.6 129,697 - MPMX19_02879 0.30 +0.9 129,697 - MPMX19_02879 0.30 -0.1 129,780 + MPMX19_02879 0.39 -0.4 129,781 - MPMX19_02879 0.39 -0.4 129,781 - MPMX19_02879 0.39 -0.6 129,800 + MPMX19_02879 0.41 -0.4 129,800 + MPMX19_02879 0.41 -0.1 129,800 + MPMX19_02879 0.41 +0.4 129,800 + MPMX19_02879 0.41 -0.1 129,800 + MPMX19_02879 0.41 -0.2 129,800 + MPMX19_02879 0.41 +0.9 129,800 + MPMX19_02879 0.41 +3.5 129,800 + MPMX19_02879 0.41 +0.6 129,800 + MPMX19_02879 0.41 -1.6 129,800 + MPMX19_02879 0.41 +0.1 129,800 + MPMX19_02879 0.41 -0.3 129,800 + MPMX19_02879 0.41 +0.2 129,800 + MPMX19_02879 0.41 +1.4 129,801 - MPMX19_02879 0.41 -1.2 129,801 - MPMX19_02879 0.41 -0.2 129,801 - MPMX19_02879 0.41 -0.6 129,801 - MPMX19_02879 0.41 -1.1 129,801 - MPMX19_02879 0.41 -0.4 129,801 - MPMX19_02879 0.41 -0.6 129,801 - MPMX19_02879 0.41 +0.4 129,801 - MPMX19_02879 0.41 -2.4 129,801 - MPMX19_02879 0.41 -1.5 129,801 - MPMX19_02879 0.41 -1.1 129,983 - MPMX19_02879 0.59 +0.9 129,984 + MPMX19_02879 0.59 +1.4 129,984 + MPMX19_02879 0.59 -0.2 129,984 + MPMX19_02879 0.59 -1.2 129,984 + MPMX19_02879 0.59 -1.1 129,984 + MPMX19_02879 0.59 -1.1 129,984 + MPMX19_02879 0.59 -0.3 129,984 + MPMX19_02879 0.59 +0.9 129,984 + MPMX19_02879 0.59 -0.9 129,984 + MPMX19_02879 0.59 +0.8 129,984 + MPMX19_02879 0.59 +0.9 129,984 + MPMX19_02879 0.59 -0.7 129,984 + MPMX19_02879 0.59 +0.8 129,984 + MPMX19_02879 0.59 -1.2 129,984 + MPMX19_02879 0.59 -0.8 129,984 + MPMX19_02879 0.59 -0.4 129,985 - MPMX19_02879 0.59 +0.1 129,985 - MPMX19_02879 0.59 -1.2 129,985 - MPMX19_02879 0.59 -0.9 129,985 - MPMX19_02879 0.59 -0.4 129,985 - MPMX19_02879 0.59 -0.9 129,985 - MPMX19_02879 0.59 -0.7 129,985 - MPMX19_02879 0.59 +1.7 129,985 - MPMX19_02879 0.59 -0.1 129,985 - MPMX19_02879 0.59 -0.4 129,985 - MPMX19_02879 0.59 -0.5 129,985 - MPMX19_02879 0.59 -0.1 130,059 + MPMX19_02879 0.67 -0.1 130,059 + MPMX19_02879 0.67 -0.4 130,060 - MPMX19_02879 0.67 -0.6 130,066 - MPMX19_02879 0.68 -0.0 130,227 + MPMX19_02879 0.84 -0.2 130,228 - MPMX19_02879 0.84 +1.5 130,503 + +1.4 130,503 + -0.6 130,503 + -1.6 130,503 + +0.8 130,503 + -1.5 130,504 - -0.9 130,504 - -0.5 130,504 - -0.7 130,549 + -1.5 130,549 + -1.4 130,549 + -1.2 130,549 + -0.1 130,549 + -0.0 130,549 + +0.1 130,549 + -0.4 130,549 + -0.5 130,549 + -1.1 130,549 + +1.3 130,549 + -0.8 130,549 + -2.8 130,549 + -0.6 130,549 + +0.5 130,549 + -0.6 130,549 + -0.1 130,549 + +0.1 130,549 + +0.9 130,549 + +0.6 130,549 + -0.4 130,549 + -0.3 130,550 - -0.3 130,550 - -0.8 130,550 - +0.4 130,550 - -2.8 130,550 - -0.3 130,550 - +0.2 130,550 - +0.1 130,550 - -1.0 130,550 - -1.4 130,550 - -0.2 130,550 - -1.5 130,550 - -0.7 130,550 - -0.6 130,550 - +0.6 130,550 - -0.4 130,550 - -2.3 130,550 - -1.4 130,550 - +1.4 130,693 + MPMX19_02880 0.13 -1.9 130,693 + MPMX19_02880 0.13 -1.4 130,693 + MPMX19_02880 0.13 -0.2 130,693 + MPMX19_02880 0.13 -1.3 130,693 + MPMX19_02880 0.13 +0.5 130,693 + MPMX19_02880 0.13 +0.4 130,693 + MPMX19_02880 0.13 +0.2 130,693 + MPMX19_02880 0.13 -0.2 130,693 + MPMX19_02880 0.13 +0.9 130,693 + MPMX19_02880 0.13 +0.5 130,693 + MPMX19_02880 0.13 +0.2 130,693 + MPMX19_02880 0.13 +0.6 130,693 + MPMX19_02880 0.13 +0.0 130,694 - MPMX19_02880 0.13 -0.5 130,694 - MPMX19_02880 0.13 -0.4 130,694 - MPMX19_02880 0.13 -1.5 130,694 - MPMX19_02880 0.13 +1.1 130,694 - MPMX19_02880 0.13 -1.4 130,694 - MPMX19_02880 0.13 +0.3 130,694 - MPMX19_02880 0.13 +0.8 130,694 - MPMX19_02880 0.13 +0.2 130,694 - MPMX19_02880 0.13 +0.6 130,694 - MPMX19_02880 0.13 -0.6 130,694 - MPMX19_02880 0.13 -0.1 131,638 + -0.6 131,673 + -2.0 131,778 + MPMX19_02881 0.22 -3.4 131,778 + MPMX19_02881 0.22 +0.8 131,779 - MPMX19_02881 0.22 +0.2 131,779 - MPMX19_02881 0.22 -0.1 131,779 - MPMX19_02881 0.22 -1.6 131,838 + MPMX19_02881 0.34 -2.1 131,838 + MPMX19_02881 0.34 -0.8 131,838 + MPMX19_02881 0.34 -0.6 131,838 + MPMX19_02881 0.34 -1.1 131,839 - MPMX19_02881 0.34 +0.0 131,839 - MPMX19_02881 0.34 +0.5 131,839 - MPMX19_02881 0.34 -0.2 131,839 - MPMX19_02881 0.34 +0.0 131,839 - MPMX19_02881 0.34 +0.8 131,839 - MPMX19_02881 0.34 -0.2 131,839 - MPMX19_02881 0.34 -0.2 132,200 + +0.4 132,227 + -0.1 132,227 + +0.2 132,228 - -0.3 132,228 - +0.2 132,250 + -1.1 132,250 + -1.9 132,251 - +0.1 132,251 - -0.5 132,251 - -1.1 132,266 + -1.5 132,266 + +0.2 132,267 - -0.6 132,267 - +0.0 132,267 - -0.2 132,360 + MPMX19_02882 0.10 +0.1 132,360 + MPMX19_02882 0.10 +1.0 132,360 + MPMX19_02882 0.10 +1.6 132,360 + MPMX19_02882 0.10 -0.2 132,360 + MPMX19_02882 0.10 +0.1 132,360 + MPMX19_02882 0.10 +1.1 132,360 + MPMX19_02882 0.10 +0.9 132,361 - MPMX19_02882 0.11 -1.3 132,361 - MPMX19_02882 0.11 -0.9 132,361 - MPMX19_02882 0.11 +0.4 132,516 + MPMX19_02882 0.28 +0.1 132,516 + MPMX19_02882 0.28 +0.4 132,516 + MPMX19_02882 0.28 -0.6 132,516 + MPMX19_02882 0.28 -1.1 132,516 + MPMX19_02882 0.28 +1.4 132,517 - MPMX19_02882 0.28 -0.1 132,553 - MPMX19_02882 0.32 -1.3
Or see this region's nucleotide sequence