Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02877

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02876 and MPMX19_02877 are separated by 124 nucleotidesMPMX19_02877 and MPMX19_02878 are separated by 129 nucleotides MPMX19_02876: MPMX19_02876 - hypothetical protein, at 125,712 to 126,806 _02876 MPMX19_02877: MPMX19_02877 - ATP-dependent RecD-like DNA helicase, at 126,931 to 128,133 _02877 MPMX19_02878: MPMX19_02878 - hypothetical protein, at 128,263 to 129,237 _02878 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.060 kb on + strand, within MPMX19_02876at 126.061 kb on - strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.202 kb on + strand, within MPMX19_02876at 126.202 kb on + strand, within MPMX19_02876at 126.203 kb on - strand, within MPMX19_02876at 126.855 kb on - strandat 126.855 kb on - strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.038 kb on - strandat 127.038 kb on - strandat 127.038 kb on - strandat 127.148 kb on + strand, within MPMX19_02877at 127.148 kb on + strand, within MPMX19_02877at 127.149 kb on - strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.662 kb on + strand, within MPMX19_02877at 127.697 kb on + strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.868 kb on + strand, within MPMX19_02877at 127.868 kb on + strand, within MPMX19_02877at 127.868 kb on + strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.869 kb on - strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.955 kb on + strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 127.956 kb on - strand, within MPMX19_02877at 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.072 kb on + strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.073 kb on - strandat 128.201 kb on + strandat 128.201 kb on + strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.202 kb on - strandat 128.259 kb on - strandat 128.275 kb on + strandat 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.641 kb on + strand, within MPMX19_02878at 128.642 kb on - strand, within MPMX19_02878at 128.890 kb on - strand, within MPMX19_02878at 128.908 kb on + strand, within MPMX19_02878at 128.909 kb on - strand, within MPMX19_02878at 128.909 kb on - strand, within MPMX19_02878at 128.929 kb on + strand, within MPMX19_02878at 128.930 kb on - strand, within MPMX19_02878at 128.930 kb on - strand, within MPMX19_02878at 129.007 kb on + strand, within MPMX19_02878at 129.007 kb on + strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878at 129.008 kb on - strand, within MPMX19_02878

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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126,060 + MPMX19_02876 0.32 -1.7
126,061 - MPMX19_02876 0.32 -1.2
126,175 + MPMX19_02876 0.42 -1.4
126,175 + MPMX19_02876 0.42 +0.4
126,175 + MPMX19_02876 0.42 -1.2
126,175 + MPMX19_02876 0.42 +1.4
126,175 + MPMX19_02876 0.42 +0.9
126,175 + MPMX19_02876 0.42 +0.4
126,176 - MPMX19_02876 0.42 +0.6
126,176 - MPMX19_02876 0.42 -0.1
126,176 - MPMX19_02876 0.42 -2.6
126,176 - MPMX19_02876 0.42 -0.5
126,176 - MPMX19_02876 0.42 -0.3
126,176 - MPMX19_02876 0.42 +0.6
126,202 + MPMX19_02876 0.45 +0.6
126,202 + MPMX19_02876 0.45 -0.7
126,203 - MPMX19_02876 0.45 -0.1
126,855 - -0.7
126,855 - -0.7
127,037 + -0.8
127,037 + +0.5
127,037 + +0.9
127,037 + -0.9
127,037 + +0.9
127,037 + +0.8
127,037 + +0.7
127,037 + -0.2
127,038 - -0.4
127,038 - +1.1
127,038 - -0.1
127,148 + MPMX19_02877 0.18 -0.6
127,148 + MPMX19_02877 0.18 -0.3
127,149 - MPMX19_02877 0.18 -0.4
127,196 + MPMX19_02877 0.22 -0.6
127,196 + MPMX19_02877 0.22 -0.2
127,196 + MPMX19_02877 0.22 -0.6
127,196 + MPMX19_02877 0.22 +0.5
127,197 - MPMX19_02877 0.22 +0.9
127,197 - MPMX19_02877 0.22 +0.5
127,197 - MPMX19_02877 0.22 +0.4
127,197 - MPMX19_02877 0.22 +0.9
127,442 + MPMX19_02877 0.42 -0.1
127,442 + MPMX19_02877 0.42 -0.4
127,442 + MPMX19_02877 0.42 -0.2
127,442 + MPMX19_02877 0.42 +0.2
127,442 + MPMX19_02877 0.42 -0.6
127,442 + MPMX19_02877 0.42 +0.0
127,443 - MPMX19_02877 0.43 -1.1
127,443 - MPMX19_02877 0.43 -0.2
127,443 - MPMX19_02877 0.43 -0.8
127,443 - MPMX19_02877 0.43 +0.6
127,443 - MPMX19_02877 0.43 +0.6
127,443 - MPMX19_02877 0.43 -0.6
127,443 - MPMX19_02877 0.43 -2.1
127,662 + MPMX19_02877 0.61 +0.3
127,697 + MPMX19_02877 0.64 +0.2
127,698 - MPMX19_02877 0.64 -0.5
127,698 - MPMX19_02877 0.64 -0.5
127,698 - MPMX19_02877 0.64 -1.5
127,698 - MPMX19_02877 0.64 +1.2
127,868 + MPMX19_02877 0.78 -0.3
127,868 + MPMX19_02877 0.78 -0.1
127,868 + MPMX19_02877 0.78 -0.4
127,869 - MPMX19_02877 0.78 -0.8
127,869 - MPMX19_02877 0.78 +0.3
127,869 - MPMX19_02877 0.78 +0.6
127,869 - MPMX19_02877 0.78 -0.1
127,955 + MPMX19_02877 0.85 +0.4
127,955 + MPMX19_02877 0.85 +0.4
127,955 + MPMX19_02877 0.85 -0.5
127,955 + MPMX19_02877 0.85 -1.2
127,955 + MPMX19_02877 0.85 -0.9
127,955 + MPMX19_02877 0.85 -0.4
127,955 + MPMX19_02877 0.85 -2.1
127,955 + MPMX19_02877 0.85 -0.9
127,955 + MPMX19_02877 0.85 +0.1
127,955 + MPMX19_02877 0.85 -0.4
127,955 + MPMX19_02877 0.85 -1.5
127,955 + MPMX19_02877 0.85 -0.6
127,955 + MPMX19_02877 0.85 -1.2
127,956 - MPMX19_02877 0.85 -1.5
127,956 - MPMX19_02877 0.85 +0.6
127,956 - MPMX19_02877 0.85 +0.9
127,956 - MPMX19_02877 0.85 -0.9
127,956 - MPMX19_02877 0.85 -1.3
127,956 - MPMX19_02877 0.85 -0.3
127,956 - MPMX19_02877 0.85 -0.7
127,956 - MPMX19_02877 0.85 +2.4
127,956 - MPMX19_02877 0.85 -0.8
127,956 - MPMX19_02877 0.85 -0.1
127,956 - MPMX19_02877 0.85 -1.6
127,956 - MPMX19_02877 0.85 -1.1
127,956 - MPMX19_02877 0.85 +0.2
128,072 + -0.9
128,072 + +0.9
128,072 + -1.6
128,072 + -0.2
128,072 + -0.9
128,072 + +1.5
128,072 + -0.1
128,073 - -1.1
128,073 - +0.6
128,073 - -0.4
128,073 - -0.4
128,073 - -0.8
128,073 - -1.5
128,073 - -1.1
128,201 + -1.4
128,201 + -0.1
128,202 - -1.2
128,202 - +0.6
128,202 - -1.4
128,202 - -0.4
128,202 - -1.0
128,202 - +0.2
128,202 - -2.5
128,202 - +0.1
128,259 - -2.2
128,275 + -0.6
128,641 + MPMX19_02878 0.39 -0.6
128,641 + MPMX19_02878 0.39 -0.2
128,641 + MPMX19_02878 0.39 -1.5
128,641 + MPMX19_02878 0.39 -0.1
128,641 + MPMX19_02878 0.39 -0.5
128,641 + MPMX19_02878 0.39 +0.8
128,642 - MPMX19_02878 0.39 -0.6
128,890 - MPMX19_02878 0.64 -1.6
128,908 + MPMX19_02878 0.66 -1.8
128,909 - MPMX19_02878 0.66 +0.1
128,909 - MPMX19_02878 0.66 +0.5
128,929 + MPMX19_02878 0.68 -0.4
128,930 - MPMX19_02878 0.68 -0.4
128,930 - MPMX19_02878 0.68 +0.4
129,007 + MPMX19_02878 0.76 -0.5
129,007 + MPMX19_02878 0.76 -0.3
129,008 - MPMX19_02878 0.76 -2.6
129,008 - MPMX19_02878 0.76 +0.4
129,008 - MPMX19_02878 0.76 -0.8
129,008 - MPMX19_02878 0.76 -1.8
129,008 - MPMX19_02878 0.76 -0.4

Or see this region's nucleotide sequence