Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02864 and MPMX19_02865 are separated by 11 nucleotides MPMX19_02865 and MPMX19_02866 overlap by 4 nucleotides MPMX19_02866 and MPMX19_02867 are separated by 21 nucleotides
MPMX19_02864: MPMX19_02864 - PKHD-type hydroxylase, at 109,316 to 110,002
_02864
MPMX19_02865: MPMX19_02865 - hypothetical protein, at 110,014 to 110,676
_02865
MPMX19_02866: MPMX19_02866 - 4-hydroxymandelate oxidase, at 110,673 to 111,752
_02866
MPMX19_02867: MPMX19_02867 - hypothetical protein, at 111,774 to 113,450
_02867
Position (kb)
110
111
112 Strain fitness (log2 ratio)
-2
-1
0
1 at 109.697 kb on + strand, within MPMX19_02864 at 109.697 kb on + strand, within MPMX19_02864 at 109.697 kb on + strand, within MPMX19_02864 at 109.697 kb on + strand, within MPMX19_02864 at 109.697 kb on + strand, within MPMX19_02864 at 109.697 kb on + strand, within MPMX19_02864 at 109.697 kb on + strand, within MPMX19_02864 at 109.698 kb on - strand, within MPMX19_02864 at 109.698 kb on - strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.730 kb on + strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.731 kb on - strand, within MPMX19_02864 at 109.775 kb on + strand, within MPMX19_02864 at 109.776 kb on - strand, within MPMX19_02864 at 109.776 kb on - strand, within MPMX19_02864 at 109.886 kb on + strand, within MPMX19_02864 at 109.887 kb on - strand, within MPMX19_02864 at 109.887 kb on - strand, within MPMX19_02864 at 109.887 kb on - strand, within MPMX19_02864 at 109.887 kb on - strand, within MPMX19_02864 at 109.887 kb on - strand, within MPMX19_02864 at 109.967 kb on + strand at 109.967 kb on + strand at 109.968 kb on - strand at 110.221 kb on + strand, within MPMX19_02865 at 110.329 kb on + strand, within MPMX19_02865 at 110.329 kb on + strand, within MPMX19_02865 at 110.329 kb on + strand, within MPMX19_02865 at 110.329 kb on + strand, within MPMX19_02865 at 110.329 kb on + strand, within MPMX19_02865 at 110.329 kb on + strand, within MPMX19_02865 at 110.330 kb on - strand, within MPMX19_02865 at 110.330 kb on - strand, within MPMX19_02865 at 110.569 kb on + strand, within MPMX19_02865 at 110.569 kb on + strand, within MPMX19_02865 at 110.569 kb on + strand, within MPMX19_02865 at 110.569 kb on + strand, within MPMX19_02865 at 110.570 kb on - strand, within MPMX19_02865 at 110.709 kb on + strand at 110.709 kb on + strand at 110.709 kb on + strand at 110.709 kb on + strand at 110.710 kb on - strand at 110.754 kb on + strand at 110.754 kb on + strand at 110.754 kb on + strand at 110.754 kb on + strand at 110.755 kb on - strand at 110.755 kb on - strand at 110.755 kb on - strand at 110.755 kb on - strand at 110.896 kb on - strand, within MPMX19_02866 at 110.896 kb on - strand, within MPMX19_02866 at 110.896 kb on - strand, within MPMX19_02866 at 110.896 kb on - strand, within MPMX19_02866 at 111.023 kb on - strand, within MPMX19_02866 at 111.069 kb on + strand, within MPMX19_02866 at 111.070 kb on - strand, within MPMX19_02866 at 111.070 kb on - strand, within MPMX19_02866 at 111.458 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.599 kb on - strand, within MPMX19_02866 at 111.599 kb on - strand, within MPMX19_02866 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 109,697 + MPMX19_02864 0.55 +1.1 109,697 + MPMX19_02864 0.55 +0.5 109,697 + MPMX19_02864 0.55 -0.2 109,697 + MPMX19_02864 0.55 +0.5 109,697 + MPMX19_02864 0.55 -1.5 109,697 + MPMX19_02864 0.55 +1.5 109,697 + MPMX19_02864 0.55 -2.6 109,698 - MPMX19_02864 0.56 -1.0 109,698 - MPMX19_02864 0.56 -0.6 109,730 + MPMX19_02864 0.60 -0.3 109,730 + MPMX19_02864 0.60 -1.3 109,730 + MPMX19_02864 0.60 +0.5 109,730 + MPMX19_02864 0.60 +0.8 109,730 + MPMX19_02864 0.60 -1.4 109,730 + MPMX19_02864 0.60 -1.1 109,730 + MPMX19_02864 0.60 -1.1 109,731 - MPMX19_02864 0.60 +0.0 109,731 - MPMX19_02864 0.60 +0.4 109,731 - MPMX19_02864 0.60 -0.1 109,731 - MPMX19_02864 0.60 -1.0 109,731 - MPMX19_02864 0.60 +0.2 109,731 - MPMX19_02864 0.60 +0.9 109,731 - MPMX19_02864 0.60 -1.7 109,775 + MPMX19_02864 0.67 +0.4 109,776 - MPMX19_02864 0.67 +0.4 109,776 - MPMX19_02864 0.67 +0.1 109,886 + MPMX19_02864 0.83 -0.0 109,887 - MPMX19_02864 0.83 +0.4 109,887 - MPMX19_02864 0.83 +0.3 109,887 - MPMX19_02864 0.83 -1.3 109,887 - MPMX19_02864 0.83 -0.5 109,887 - MPMX19_02864 0.83 +0.6 109,967 + +0.8 109,967 + -0.6 109,968 - -1.1 110,221 + MPMX19_02865 0.31 +0.8 110,329 + MPMX19_02865 0.48 -1.4 110,329 + MPMX19_02865 0.48 -1.1 110,329 + MPMX19_02865 0.48 +0.3 110,329 + MPMX19_02865 0.48 +0.2 110,329 + MPMX19_02865 0.48 +0.0 110,329 + MPMX19_02865 0.48 -0.5 110,330 - MPMX19_02865 0.48 -1.0 110,330 - MPMX19_02865 0.48 -0.4 110,569 + MPMX19_02865 0.84 -1.9 110,569 + MPMX19_02865 0.84 +0.6 110,569 + MPMX19_02865 0.84 -0.1 110,569 + MPMX19_02865 0.84 -0.6 110,570 - MPMX19_02865 0.84 -0.4 110,709 + -0.9 110,709 + -1.3 110,709 + -0.5 110,709 + +0.2 110,710 - -0.3 110,754 + -0.6 110,754 + +0.4 110,754 + -0.5 110,754 + -1.1 110,755 - -0.5 110,755 - -0.2 110,755 - -0.8 110,755 - +0.9 110,896 - MPMX19_02866 0.21 +0.0 110,896 - MPMX19_02866 0.21 +1.4 110,896 - MPMX19_02866 0.21 -0.4 110,896 - MPMX19_02866 0.21 -0.1 111,023 - MPMX19_02866 0.32 +0.6 111,069 + MPMX19_02866 0.37 -0.6 111,070 - MPMX19_02866 0.37 +1.7 111,070 - MPMX19_02866 0.37 -0.4 111,458 + MPMX19_02866 0.73 -1.4 111,598 + MPMX19_02866 0.86 +1.4 111,598 + MPMX19_02866 0.86 -0.2 111,598 + MPMX19_02866 0.86 -0.4 111,598 + MPMX19_02866 0.86 +0.7 111,598 + MPMX19_02866 0.86 +0.5 111,599 - MPMX19_02866 0.86 -0.4 111,599 - MPMX19_02866 0.86 -1.5 112,403 + MPMX19_02867 0.38 -2.2 112,403 + MPMX19_02867 0.38 -1.1 112,403 + MPMX19_02867 0.38 -0.1 112,403 + MPMX19_02867 0.38 -0.2 112,403 + MPMX19_02867 0.38 -0.2 112,403 + MPMX19_02867 0.38 -0.6 112,403 + MPMX19_02867 0.38 -1.2 112,403 + MPMX19_02867 0.38 -0.6 112,403 + MPMX19_02867 0.38 +0.2 112,403 + MPMX19_02867 0.38 +1.7 112,403 + MPMX19_02867 0.38 -0.0 112,404 - MPMX19_02867 0.38 -0.8 112,404 - MPMX19_02867 0.38 -0.4 112,404 - MPMX19_02867 0.38 -0.2 112,404 - MPMX19_02867 0.38 -2.3 112,404 - MPMX19_02867 0.38 +0.1 112,404 - MPMX19_02867 0.38 +0.8 112,404 - MPMX19_02867 0.38 -1.1 112,404 - MPMX19_02867 0.38 -1.1 112,404 - MPMX19_02867 0.38 -1.6 112,404 - MPMX19_02867 0.38 -0.3 112,404 - MPMX19_02867 0.38 +0.2 112,404 - MPMX19_02867 0.38 -0.6 112,404 - MPMX19_02867 0.38 -0.5 112,404 - MPMX19_02867 0.38 +0.4
Or see this region's nucleotide sequence